Molecular phylogeny of the genus Pseudoplatystoma (Bleeker, 1862): Biogeographic and evolutionary implications

Molecular Phylogenetics and Evolution

Volumn 51, Issue 3, 2009, Pages 588-594

  Torrico, J P ^a,d   Hubert, N ^a   Desmarais, E ^d   Duponchelle, F ^b   Nunez Rodriguez J ^a   Montoya Burgos, J ^e   Garcia Davila, C ^c   Carvajal Vallejos, F M ^b,g   Grajales, A A ^f   Bonhomme, F ^d   Renno, J F ^a  

^a UNIVERSIDAD MAYOR DE SAN ANDRÉS   (Bolivia)

^b UNIVERSIDAD MAYOR DE SAN SIMÓN   (Bolivia)

^c INSTITUTO DE INVESTIGACIONES DE LA AMAZONÍA PERUANA   (Peru)

^d INSTITUT DES SCIENCES DE L EVOLUTION   (France)

^e UNIVERSITY OF GENEVA   (Switzerland)

^f Facultad de Ciencias Agropecuarias   (Colombia)

^g Final Av Max Fernández zona Aracagua   (Bolivia)

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BAYES THEOREM; CATFISH; CLASSIFICATION; DNA SEQUENCE; GENETICS; GEOGRAPHY; MOLECULAR EVOLUTION; PHYLOGENY; STATISTICAL MODEL;

ANIMALS; BAYES THEOREM; CATFISHES; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GEOGRAPHY; LIKELIHOOD FUNCTIONS; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

PSEUDOPLATYSTOMA;

EID: 67349144129     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.11.019     Document Type: Article

References (49)

1. Agnèse J.-F., Zentz F., Legros O., and Sellos D. Phylogenetic relationships and phylogeography of the Killifish species of the subgenus Chromaphyosemion (Radda, 1971) in West Africa, inferred from mitochondrial DNA sequences. Molecular Phylogenetics and Evolution 40 (2006) 332-346
2. Albert J.S., Lovejoy N.R., and Crampton W.G.R. Miocene tectonism and the separation of cis- and trans-andean river basins: evidence from Neotropical fishes. Journal of South American Earth Sciences 21 (2006) 14-27
3. Barluenga M., and Meyer A. The Midas cichlid species complex: incipient sympatric speciation in Nicaraguan cichlid fishes?. Molecular Ecology 13 (2004) 2061-2076
4. Barthem R., and Goulding M. The catfish connection: Ecology, migration and conservation of Amazon predators (1997), Columbia University Press, New York
5. Bermingham E., MacCajerty S., and Martin A.P. Fish biogeography and molecular clocks: perspectives from the Panamanian Isthmus. In: Kocher T.D., and Stepien C.A. (Eds). Molecular Systematics of Fishes (1997), CA Academic Press, San Diego 113-128
6. Bleeker P.P. Atlas Ichthyologique des Indes Orientales Néêrlandais. Publié sous les Auspices du Gouvenement Colonial Néêrlandais (1862), J. Smith and Gide, Amsterdam
7. Buitrago-Suarez I.A., and Burr B.M. Taxonomy of the catfish genus Pseudoplatystoma Bleker (Siluriformes: Pimelodidae) with recognition of eight species. Zootaxa 1512 (2007) 1-38
8. Carolsfeld J., Harvey B., Ross C., and Baer A. Migratory Fishes of South America: Biology, Fisheries and Conservation Status (2003), World Fisheries Trust/World Bank/IDRC, Victoria
9. Coronel J.S., Maes G.E., Clauss S., Van Damme P.A., and Volckaert F.A.M. Differential population history in the migratory catfishes Brachyplatystoma flavicans and Pseudoplatystoma fasciatum (Pimelodidae) from the Bolivian Amazon assessed with nuclear and mitochondrial DNA markers. Journal of Fish Biology 65 (2004) 859-868
10. Drummond, A.J., Rambaut, A., 2008. BEAST version 1.4.8. Available from: .
11. Excoffier L., Laval G., and Scheider S. Arlequin ver 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics OnLine 1 (2005) 47-50
12. Farias I.P., Ortí G., Sampaio I., Schneider H., and Meyer A. The Cytochrome b gene as a phylogenetic marker: the limits of resolution for analyzing relationships among Cichlid fishes. Molecular Evolution 53 (2001) 89-103
13. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
14. Garzione C.N., Hoke G.D., Libarkin J.C., Withers S., MacFadden B.C., Eiler J., Ghosh P., and Mulch A. Rise of the Andes. Science 320 (2008) 1304-1307
15. Guindon S., and Gascuel O. A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52 (2003) 696-704
16. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41 (1999) 95-98
17. Haq B.U., Hardenbol J., and Vail P.R. Chronology of fluctuating sea levels since the Triassic. Science 235 (1987) 1156-1167
18. Hardman M., and Lundberg J.G. Molecular phylogeny and chronology of diversification for "phractocephaline" catfishes (Siluriformes: Pimelodidae) based on mitochondrial DNA and nuclear recombination activating gene 2 sequences. Molecular Phylogenetics and Evolution 40 (2006) 410-418
19. Hoorn C. Marine incursions and the influence of Andean Tectonics on the Miocene depositional history of northwestern Amazonia: results of a palynostratigraphic study. Paleogeography, Paleoclimatology and Palaeoecology 105 (1993) 267-309
20. Hoorn C., Guerreo J., Sarmiento G.A., and Lorente M.A. Andean tectonics as a cause for changing drainage patterns in Miocene northern South America. Geology 23 (1995) 237-240
21. Hubert N., and Renno J.-F. Historical biogeography of South American freshwater fishes. Journal of Biogeography 33 (2006) 1411-1436
22. Hubert N., Duponchelle F., Nuñez J., Garcia-Davila C., Paugy D., and Renno J.-F. Phylogeography of the piranha genera Serrasalmus and Pygocentrus: implication for the diversification of the Neotropical ichthyofauna. Molecular Ecology 16 (2007) 2115-2136
23. Hubert N., Hanner R., Holm H.R., Mandrak N.E., Taylo E., Burridgen M., Watkinson D., Dumont P., Curry A., Betzen P., Zhang J., April J., and Betnatchez L. Identifying Canadian freshwater fishes through DNA barcodes. PLoS ONE 3 6 (2008) e2490 10.1371/journal.pone.0002490
24. Irwin D.M., Kocher T.D., and Wilson A.C. Evolution of cytochrome b gene in mammals. Journal of Molecular Biology and Evolution 2 (1991) 13-34
25. Lauzanne L., and Loubens G. Peces del Rio Mamoré (1985), ORSTOM, Paris
26. Loubens G.P.J., and Panfili J. Biologie de Pseudoplatystoma fasciatum et P. tigrinum (Teleostei: Pimelodidae) dans le bassin du Mamoré (Amazonie Boliviene). Ichtyol Explor Freshwaters 11 (2000) 13-34
27. Lovejoy N.R., and Araujo L.G.D. Molecular systematics, biogeography and population structure of Neotropical freshwater needlefishes of the genus Potamorrhaphis. Molecular Ecology 9 (2000) 259-268
28. Lowe-McConnell R.H. The fishes of the Rupununi savannah districts of British Guiana. Part 1. Ecological groupings of fish species and effects of the seasonal cycle on the fish. Zoological Journal of the Linnaean Society 45 (1964) 103-144
29. Lundberg J.G. The temporal context for diversification of Neotropical fishes. In: Malabarba L.R., Reis R.E., Vari R.P., Lucena C.A.S., and Lucena Z.M.S. (Eds). Phylogeny and Classification of Neotropical Fishes (1998), Edipucrs, Porto Alegre 13-48
30. Montoya-Burgos J.I. Historical biogeography of the catfish genus Hypostomus (Siluriforms: Loricariidae), with implications on the diversification of Neotropical ichthyofauna. Molecular Ecology 12 (2003) 1855-1867
31. Mossel E., and Vigoda E. Phylogenetic MCMC algorithms are misleading on mixtures of trees. Science 309 (2005) 2207-2209
32. Nabholz B., Glémin S., and Galtier N. Strong variation of mitochondrial mutation rate across Mammals - the longevity hypothesis. Molecular Biology and Evolution 25 1 (2008) 120-130
33. Nei M. Molecular Evolutionary Genetics (1987), Columbia University Press, New York
34. Nuñez J., Dugué R., Corcuy N., Duponchelle F., Renno JF., Raynaud T., Hubert N., and Legendre M. Induced breeding and larval rearing of Surubi, Pseudoplatystoma fasciatum (Linnaeus, 1766), from the Bolivian Amazon. Aquaculture Research 39 (2008) 764-776
35. Paradis E.J.C., and Strimmer K. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20 (2004) 289-290
36. Paradis E.J.C. Analysis of Phylogenetics and Evolution with R (2006), Springer, New York 211pp
37. Perdices A., Bermingham E., Montilla A., and Doadrio I. Evolutionary history of the genus Rhamdia (Teleostei: Pimelodidae) in Central America. Molecular Phylogenetics and Evolution 25 (2002) 172-189
38. Rambaut, A., Drummond, A.J., 2007. Tracer v1.4. Available from: .
39. Reis R.E., Kullander S.O., and Ferraris C.J. Check List of Freshwater Fishes of South and Central America (2004), Ediprucs, Porto Alegre 729pp
40. Rocha-Olivares A., Fleeger J.W., and Foltz D.W. Decoupling of molecular and morphological Evolution in deep lineages of Meiobenthic Harpacticoid Copepod. Molecular Biology and Evolution 18 (2001) 1088-1102
41. Sanderson M.J. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. Molecular Biology and Evolution 19 (2002) 101-109
42. Sivasundar A., Bermingham E., and Orti G. Population structure and biogeography of migratory freshwater fishes (Prochilodus: Characiformes) in major South American Rivers. Molecular Ecology 10 (2001) 407-417
43. Steel M., and Matsen F.A. The Bayesian "star paradox" persists for long finite sequences. Molecular Biology and Evolution 24 (2007) 1075-1079
44. Sullivan J.P., and Lundberg J.G. A phylogenetic analysis of major groups of catfishes (Teleostei: Siluriformes) using rag1 and rag2 nuclear gene sequences. Molecular Phylogenetics and Evolution 41 (2006) 636-662
45. Suzuki Y., Glazko G.V., and Nei M. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proceedings of the National Academy of Sciences of the United States of America 99 (2002) 16138-16143
46. Taberlet N., Meyer A., and Bouvet J. Unusual mitochondrial DNA polymorphism in two local populations of blue tit (Parus acerulens). Molecular Ecology 1 (1992) 27-36
47. Vrijenhoek R.C. Conservation genetics of freshwater fish. Journal of Fish Biology 53 (1998) 394-412
48. Willis S.C., Nunez M.S., Montaña C.G., Farias I.P., and Lovejoy N.R. Systematics, biogeography, and evolution of the Neotropican peacock basses Cichla (Perciformes: Cichlidae). Molecular Phylogenetics and Evolution 44 (2007) 291-307
49. Zink R.M., and Barrowclough G.F. Mitochondrial DNA under siege in avian phylogeography. Molecular Ecology 17 (2008) 2107-2121