Influence of cold storage on soil microbial community level physiological profiles and implications for soil quality monitoring

Soil Biology and Biochemistry

Volumn 41, Issue 7, 2009, Pages 1574-1576

  Gonzalez Quiñones, Vanesa ^a,b   Banning, Natasha C ^a   Ballesta, Raimundo Jimenez ^b   Murphy, Daniel V ^a  

^a UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

^b UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

Author keywords

CLPP; Microbial community structure; MicroResp

Indexed keywords

CLPP; INCUBATION TIME; INTRINSIC DIFFERENCES; MICROBIAL COMMUNITIES; MICROBIAL COMMUNITY STRUCTURE; MICROBIAL COMMUNITY STRUCTURES; MICRORESP; SOIL MICROBIAL COMMUNITY; SOIL QUALITY; STORAGE TIME;

COLD STORAGE; ECOSYSTEMS; REFRIGERATORS;

SOILS;

MICROBIAL COMMUNITY; PHYSIOLOGY; SOIL CARBON; SOIL MICROORGANISM; SOIL QUALITY; TEMPERATURE EFFECT;

EID: 67349126507     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2009.04.004     Document Type: Article

References (21)

1. Anderson M.J. A new method for non-parametric multivariate analysis of variance. Australian Ecology 26 (2001) 32-46
2. Bending G.D., Putland C., and Rayns F. Changes in microbial community metabolism and labile organic matter fractions as early indicators of the impact of management on soil biological quality. Biology and Fertility of Soils 31 (2000) 78-84
3. Bloem J., Schouten A.J., Sorensen S.J., Rutgers M., Van der Werf A., and Breure A.M. Monitoring and evaluating soil quality. In: Bloem J., Hopkins D.W., and Benedetti A. (Eds). Microbial Methods for Assessing Soil Quality (2005) 23-49
4. Büneman E.K., Schwenke G.D., and Van Zwieten L. Impact of agricultural inputs on soil organisms - a review. Australian Journal of Soil Research 44 (2006) 379-406
5. Campbell C.D., Chapman S.J., Cameron C.M., Davidson M.S., and Potts J.M. A rapid microtiter plate method to measure carbon dioxide evolved from carbon substrate amendments so as to determine the physiological profiles of soil microbial communities by using whole soil. Applied and Environmental Microbiology 69 (2003) 3593-3599
6. Chapman S.J., Campbell C.D., and Artz R.R.E. Assessing CLPPs using MicroResp. A comparison with Biolog and multi-SIR. Journal of Soils and Sediments 7 (2007) 406-410
7. Clarke K.R., and Gorley R.N. PRIMER V6: User Manual/Tutorial (2006), PRIMER-E Ltd, Plymouth
8. Degens B.P., and Harris J.A. Development of a physiological approach to measuring the catabolic diversity of soil microbial communities. Soil Biology & Biochemistry 29 (1997) 1309-1320
9. Garland J.L., and Mills A.L. Classification and characterisation of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilisation. Applied and Environmental Microbiology 57 (1991) 2351-2359
10. Goberna M., Insam H., Pascual J.A., and Sánchez J. Storage effects on the community level physiological profiles of Mediterranean forest soils. Soil Biology & Biochemistry 37 (2005) 173-178
11. Lalor B.M., Cookson W.R., and Murphy D.V. Comparison of two methods that assess soil community level physiological profiles in a forest ecosystem. Soil Biology & Biochemistry 39 (2007) 454-462
12. Lee Y.B., Lorenz N., Dick L.K., and Dick R.P. Cold storage and pretreatment incubation effects on soil microbial properties. Soil Science Society of America Journal 71 (2007) 1299-1305
13. Nielsen M.N., and Winding A. Microorganisms as Indicators of Soil Health (2002), National Environmental Research Institute, Denmark Technical Report No. 338, 15 pp.
14. OECD, 1995. Final Report of the OECD Workshop on Selection of Soils/sediments. Belgirate, Italy, 55 pp.
15. Pesaro M., Widmer F., Nicollier G., and Zeyer J. Effects of freeze-thaw stress during soil storage on microbial communities in methidathion degradation. Soil Biology & Biochemistry 35 (2003) 1049-1061
16. Petersen S.E., and Klug M.J. Effects of sieving, storage, and incubation temperature on the phospholipid fatty acid profile of a soil microbial community. Applied and Environmental Microbiology 60 (1994) 2421-2430
17. Preston-Mafham J., Boddy L., and Randerson P.F. Analysis of microbial community functional diversity using sole-carbon-source utilisation profiles - a critique. FEMS Microbiology Ecology 42 (2002) 1-14
18. Shishido M., and Chanway C.P. Storage effects on indigenous soil microbial communities and PGPR efficacy. Soil Biology & Biochemistry 30 (1998) 939-947
19. Vance E.D., Brookes P.C., and Jenkinson D.S. An extraction method for measuring soil microbial biomass C. Soil Biology & Biochemistry 19 (1987) 703-707
20. Winding A., Hund-Rinke K., and Rutgers M. The use of microorganisms in ecological soil classification and assessment concepts. Ecotoxicology and Environmental Safety 62 (2005) 230-248
21. Wu J., Joergensen R.G., Pommerening B., Chaussod R., and Brookes P.C. Measurement of soil microbial biomass C by fumigation-extraction - an automated procedure. Soil Biology & Biochemistry 22 (1990) 1167-1169