A general two-cycle network model of molecular motors

Physica A: Statistical Mechanics and its Applications

Volumn 388, Issue 17, 2009, Pages 3465-3474

  Zhang, Yunxin ^a  

^a FUDAN UNIVERSITY   (China)

Author keywords

Mechanochemical network; Molecular motors

Indexed keywords

PHYSICS;

EXPLICIT FORMULA; MATHEMATICAL METHOD; MECHANO-CHEMISTRY; MECHANOCHEMICALS; MOLECULAR MOTORS; NATIONAL ACADEMY OF SCIENCE; NETWORK MODELING; SINGLE MACROMOLECULES;

MOTORCYCLES;

EID: 67349114899     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.physa.2009.04.039     Document Type: Article

References (29)

1. Hackney D.D. Processive motor movement. Science 316 (2007) 58-59
2. Carter N.J., and Cross R.A. Mechanics of the kinesin step. Nature 435 (2005) 308-312
3. Taniguchi Y., Nishiyama M., Ishhi Y., and Yanagida T. Entropy rectifies the brownian step of kinesin. Nature Chemical Biology 1 (2005) 342-347
4. Vale R.D. The molecular motor toolbox for intracellular transport. Cell 112 (2003) 467-480
5. Sakakibara H., Kojima H., Sakai Y., Katayama E., and Oiwa K. Inner-arm dynein c of chlamydomonas flagella is a single-headed processive motor. Nature 400 (1999) 596-589
6. Hooft A.M., Maki E.J., Cox K.K., and Baker J.E. An accelerated state of myosin-based actin motility. Biochemistry 46 (2007) 3513-3520
7. Christof J., Gebhardt M., Clemen A.E.-M., Jaud J., and Rief M. Myosin-v is a mechanical ratchet. PNAS 103 (2006) 8680-8685
8. Shiroguchi K., and Kinosita Jr. K. Myosin v walks by lever brownian motion. Science 316 (2007) 1208-1212
9. Noji H., Yasuda R., Yoshida Jr. M., and Kinosita K. Direct observation of the rotation of f1-atpase. Nature 386 (1997) 299-302
10. Howard J. Mechanics of Motor Proteins and the Cytoskeleton (2001), Sinauer Associates, Sunderland, MA
11. Zhang Y. The efficiency of molecular motors. Journal of Statistical Physics 134 (2009) 669-679
12. Svoboda K., and Block S.M. Force and velocity measured for single kinesin molecules. Cell 77 (1994) 773-784
13. Jülicher F., Ajdari A., and Prost J. Modeling molecular motors. Reviews of Modern Physics 69 4 (1997) 1269-1281
14. Qian H. Cycle kinetics, steady state thermodynamics and motorsa paradigm for living matter physics. Journal of Physics: Condensed Matter 17 (2005) S3783-S3794
15. Kolomeisky A.B., and Fisher M.E. Molecular motors: A theorists perspective. Annual Review of Physical Chemistry 58 (2007) 675-695
16. Qian H. A simple theory of motor protein kinetics and energetics. Biophysical Chemistry 67 (1997) 263-267
17. Liepelt S., and Lipowsky R. Kinesins network of chemomechanical motor cycles. Physical Review Letters 98 25 (2007) 258102
18. Liepelt S., and Lipowsky R. Operation modes of the molecular motor kinesin. Physical Review E 79 1 (2009) 011917
19. Schmiedl T., and Seifert U. Efficiency of molecular motors at maximum power. Europhysics Letters 83 (2008) 30005
20. Field Cady, Hong Qian, Open-system thermodynamic analysis of DNA polymerase fidelity, Preprint, 2009
21. Lau A.W.C., Lacoste D., and Mallick K. Nonequilibrium fluctuations and mechanochemical couplings of a molecular motor. Physical Review Letters 99 (2007) 158102
22. Fisher M.E., and Kolomeisky A.B. Simple mechanochemistry describes the dynamics of kinesin molecules. Proceedings of the National Academy of Sciences 98 14 (2001) 7748-7753
23. Kolomeisky A.B., and Fisher M.E. Periodic sequential kinetic models with jumping, branching and deaths. Physica A 279 (2000) 1-20
24. Derrida B. Velocity and diffusion constant of a periodic one-dimensional hopping model. Journal of Statistical Physics 31 3 (1983) 433-450
25. Nishiyama M., Higuchi H., and Yanagida T. Chemomechanical coupling of the forward and backward steps of single kinesin molecules. Nature Cell Biology 4 (2002) 790-797
26. Nishiyama M., Higuchi H., Ishii Y., Taniguchi Y., and Yanagida T. Single molecule processes on the stepwise movement of atp-driven molecular motors. BioSystems 71 (2003) 145-156
27. Taniguchi Y., Nishiyama M., Ishhi Y., and Yanagida T. Entropy rectifies the brownian step of kinesin. Nature Chemical Biology 1 (2005) 342-347
28. Zhang Y. Three phase model of the processive motor protein kinesin. Biophysical Chemistry 136 (2008) 19-22
29. Wang H., Peskin C.S., and Elston T.C. A robust numerical algorithm for studying biomolecular transport processes. Journal of Theoretical Biology 221 (2003) 491-511