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Volumn 8, Issue 1, 2009, Pages

Multilevel comparison of dendrograms: A new method with an application for genetic classifications

Author keywords

Phragmites australis< em>; Clonal diversity; Hierarchical clustering; Microsatellites; Partitions; Rand index; RAPD

Indexed keywords

ARTICLE; CLUSTER ANALYSIS; COMPUTER SIMULATION; CONSENSUS SEQUENCE; GENETIC ALGORITHM; MICROSATELLITE MARKER; PHYLOGENETIC TREE; RANDOM AMPLIFIED POLYMORPHIC DNA; ALGORITHM; CLASSIFICATION; GENE EXPRESSION PROFILING; GENETIC VARIABILITY; GENETICS; METHODOLOGY; PHYLOGENY; PHYSIOLOGY; POACEAE; POPULATION GENETICS; SEQUENCE ALIGNMENT;

EID: 67249089901     PISSN: None     EISSN: 15446115     Source Type: Journal    
DOI: 10.2202/1544-6115.1443     Document Type: Article
Times cited : (5)

References (26)
  • 1
    • 0004134550 scopus 로고
    • Multidimensional scaling of measures of distance between partitions
    • Arabie, P. & S. A. Boorman. 1973. Multidimensional scaling of measures of distance between partitions. J. Math. Psychol. 10: 148-203.
    • (1973) J. Math. Psychol , vol.10 , pp. 148-203
    • Arabie, P.1    Boorman, S.A.2
  • 2
    • 33750524828 scopus 로고    scopus 로고
    • Clustering: Revealing intrinsic dependencies in microarray data
    • E. R. Dougherty et al, eds, Hindawi, New York. pp
    • Brun, M., C. D. Johnson & K. S. Ramos. 2005. Clustering: revealing intrinsic dependencies in microarray data. In: E. R. Dougherty et al. (eds), Genomic Signal Processing and Statistics. Hindawi, New York. pp. 129-162.
    • (2005) Genomic Signal Processing and Statistics , pp. 129-162
    • Brun, M.1    Johnson, C.D.2    Ramos, K.S.3
  • 3
    • 0000093992 scopus 로고
    • The complexity of computing metric distances between partitions
    • Day, W. H. E. 1981. The complexity of computing metric distances between partitions. Math. Social Sci. 1: 269-287.
    • (1981) Math. Social Sci , vol.1 , pp. 269-287
    • Day, W.H.E.1
  • 4
    • 4344633582 scopus 로고
    • Comparing classifications: An evaluation of several coefficients of partition agreement
    • Classification Soc
    • Downton, M. & T. Brennan. 1980. Comparing classifications: an evaluation of several coefficients of partition agreement. Classification Soc. Bull. 4 (4):53-54.
    • (1980) Bull , vol.4 , Issue.4 , pp. 53-54
    • Downton, M.1    Brennan, T.2
  • 5
    • 67249147364 scopus 로고    scopus 로고
    • Genetic diversity in declining reed stands and its dependence on water depth, as detected by three different genetic methods
    • Engloner, A., Á. Major & J. Podani. 2009. Genetic diversity in declining reed stands and its dependence on water depth, as detected by three different genetic methods. MS submitted to Aquatic Bot.
    • (2009) MS submitted to Aquatic Bot
    • Engloner, A.1    Major, A.2    Podani, J.3
  • 6
    • 84945923591 scopus 로고
    • A method for comparing two hierarchical clusterings
    • Fowlkes, E. B. & C. L. Mallows. 1983. A method for comparing two hierarchical clusterings. J. Amer. Stat. Assoc. 78: 553-584.
    • (1983) J. Amer. Stat. Assoc , vol.78 , pp. 553-584
    • Fowlkes, E.B.1    Mallows, C.L.2
  • 7
    • 0004241258 scopus 로고    scopus 로고
    • 2nd ed. Chapman and Hall, London
    • Gordon, A.D. 1999. Classification. 2nd ed. Chapman and Hall, London.
    • (1999) Classification
    • Gordon, A.D.1
  • 8
    • 0141685907 scopus 로고    scopus 로고
    • Genetic diversity and clonal structure of Phragmites australis in the Yellow River delta of China
    • Guo, W., R. Wang, S. Zhou, S. Zhang & Z. Zhang. 2003. Genetic diversity and clonal structure of Phragmites australis in the Yellow River delta of China. Biochem. Syst. Ecol. 31:1093-1109.
    • (2003) Biochem. Syst. Ecol , vol.31 , pp. 1093-1109
    • Guo, W.1    Wang, R.2    Zhou, S.3    Zhang, S.4    Zhang, Z.5
  • 11
    • 60649100416 scopus 로고    scopus 로고
    • Data analysis for molecular characterization of plant genetic resources
    • DOI 10.1007/s10722-008- 9397-8
    • Laurentin, H. 2009. Data analysis for molecular characterization of plant genetic resources. Genet. Resour. Crop. Evol. DOI 10.1007/s10722-008- 9397-8
    • (2009) Genet. Resour. Crop. Evol
    • Laurentin, H.1
  • 12
    • 84948872101 scopus 로고
    • A study of the comparability of external criteria for hierarchical cluster analysis
    • Milligan, G. W. & M. C. Cooper. 1986. A study of the comparability of external criteria for hierarchical cluster analysis. Multivar. Behav. Res. 21: 441-458.
    • (1986) Multivar. Behav. Res , vol.21 , pp. 441-458
    • Milligan, G.W.1    Cooper, M.C.2
  • 13
    • 84973745157 scopus 로고
    • The measurement of classification agreement: An adjustment to the Rand statistic for chance agreement
    • Morey, L. & A. Agresti. 1984. The measurement of classification agreement: an adjustment to the Rand statistic for chance agreement. Educ. Psychol. Measurement 44: 33-37.
    • (1984) Educ. Psychol. Measurement , vol.44 , pp. 33-37
    • Morey, L.1    Agresti, A.2
  • 14
    • 0020600308 scopus 로고
    • Faithful consensus methods for n-trees
    • Neumann, D. A. 1983. Faithful consensus methods for n-trees. Math. Biosci. 63: 271-287.
    • (1983) Math. Biosci , vol.63 , pp. 271-287
    • Neumann, D.A.1
  • 15
    • 0000064923 scopus 로고
    • Clustering and isolation in the consensus problem for partitions
    • Neumann, D. A. & V. T. Norton. 1986. Clustering and isolation in the consensus problem for partitions. J. Classification 3: 281-297.
    • (1986) J. Classification , vol.3 , pp. 281-297
    • Neumann, D.A.1    Norton, V.T.2
  • 16
    • 0022939113 scopus 로고
    • Comparison of partitions in vegetation studies
    • Podani, J. 1986. Comparison of partitions in vegetation studies. Abstracta Botanica 10: 235-290.
    • (1986) Abstracta Botanica , vol.10 , pp. 235-290
    • Podani, J.1
  • 17
    • 0034335444 scopus 로고    scopus 로고
    • Simulation of random dendrograms and comparison tests: Some comments
    • Podani J. 2000a. Simulation of random dendrograms and comparison tests: some comments. J. Classification 17:123-142.
    • (2000) J. Classification , vol.17 , pp. 123-142
    • Podani, J.1
  • 19
    • 67249108298 scopus 로고    scopus 로고
    • Podani, J. 2001. SYN-TAX 2000. Computer Programs for Data Analysis in Ecology and Systematics. User's Manual. Scientia, Budapest.
    • Podani, J. 2001. SYN-TAX 2000. Computer Programs for Data Analysis in Ecology and Systematics. User's Manual. Scientia, Budapest.
  • 20
    • 84868984727 scopus 로고    scopus 로고
    • Podani, J. 2009. DENCOMPAR: Computer Program for Multilevel Dendrogram Comparison. Users Manual. Available at http://ramet.elte.hu/∼podani
    • Podani, J. 2009. DENCOMPAR: Computer Program for Multilevel Dendrogram Comparison. Users Manual. Available at http://ramet.elte.hu/∼podani
  • 21
    • 0021560727 scopus 로고
    • Comparison of dendrograms: A multivariate approach
    • Podani, J. & T. A. Dickinson. 1984. Comparison of dendrograms: a multivariate approach. Can. J. Bot. 62:2765-2778.
    • (1984) Can. J. Bot , vol.62 , pp. 2765-2778
    • Podani, J.1    Dickinson, T.A.2
  • 22
    • 84950632109 scopus 로고
    • Objective criteria for the evaluation of clustering methods
    • Rand, W. M. 1971. Objective criteria for the evaluation of clustering methods. J. Amer. Stat. Assoc. 66: 846-850.
    • (1971) J. Amer. Stat. Assoc , vol.66 , pp. 846-850
    • Rand, W.M.1
  • 24
    • 0002471149 scopus 로고
    • The comparison of dendrograms by objective methods
    • Sokal, R. R. & F. J. Rohlf. 1962. The comparison of dendrograms by objective methods. Taxon 11: 33-40.
    • (1962) Taxon , vol.11 , pp. 33-40
    • Sokal, R.R.1    Rohlf, F.J.2
  • 25
    • 18844402792 scopus 로고    scopus 로고
    • Phylogeny inference based on distance methods
    • Salemi, M. and A-M. Vandamme eds, Cambridge Univ. Press, Cambridge. pp
    • Van de Peer, Y. 2003. Phylogeny inference based on distance methods. In: Salemi, M. and A-M. Vandamme (eds), The Phylogenetic Handbook: A Practical Approach to DNA and Protein Phylogeny. Cambridge Univ. Press, Cambridge. pp. 101-119.
    • (2003) The Phylogenetic Handbook: A Practical Approach to DNA and Protein Phylogeny , pp. 101-119
    • Van de Peer, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.