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Volumn 11, Issue 22, 2009, Pages 4556-4563

Chemical and protein shifts in the spectrum of the photoactive yellow protein: A time-dependent density functional theory/molecular mechanics study

(3) González, Eneritz Muguruza a Guidoni, Leonardo b Molteni, Carla a

a KING'S COLLEGE LONDON (United Kingdom)

b UNIVERSITY OF L'AQUILA (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 66749162682 PISSN: 14639076 EISSN: None Source Type: Journal
DOI: 10.1039/b902615k Document Type: Article

Times cited : (33)

References (60)

1
- 0023152468
- T. E. Meyer, E. Yakali, M. A. Cusanovich, G. Tollin Biochemistry, 1987, 26, 418.
- (1987) Biochemistry , vol.26 , pp. 418
- Meyer, T.E.¹ Yakali, E.² Cusanovich, M.A.³ Tollin, G.⁴

2
- 0027324441
- W. W. Sprenger, W. D. Hoff, J. P. Armitage, K. J. Hellingwerf J. Bacteriol., 1993, 175, 3096.
- (1993) J. Bacteriol. , vol.175 , pp. 3096
- Sprenger, W.W.¹ Hoff, W.D.² Armitage, J.P.³ Hellingwerf, K.J.⁴

3
- 0032510475
- U. K. Genick, S. M. Soltis, P. Kuhn, I. L. Canestrelli, E. D. Getzoff Nature, 1998, 392, 206.
- (1998) Nature , vol.392 , pp. 206
- Genick, U.K.¹ Soltis, S.M.² Kuhn, P.³ Canestrelli, I.L.⁴ Getzoff, E.D.⁵

4
- 0037468225
- K. J. Hellingwerf, J. Hendriks, T. Gensch J. Phys. Chem. A, 2003, 107, 1082.
- (2003) J. Phys. Chem. A , vol.107 , pp. 1082
- Hellingwerf, K.J.¹ Hendriks, J.² Gensch, T.³

5
- 1842502916
- G. Groenhof, M. Bouxin-Cademartory, B. Hess, S. P. de Visser, H. J. C. Berendsen, M. Olivucci, A. E. Mark, M. A. Robb J. Am. Chem. Soc., 2004, 126, 4228.
- (2004) J. Am. Chem. Soc. , vol.126 , pp. 4228
- Groenhof, G.¹ Bouxin-Cademartory, M.² Hess, B.³ de Visser, S.P.⁴ Berendsen, H.J.C.⁵ Olivucci, M.⁶ Mark, A.E.⁷ Robb, M.A.⁸

6
- 0142135985
- C. Ko, B. Levine, A. Toniolo, L. Manohar, S. Olsen, H.-J. Werner, T. J. Martínez J. Am. Chem. Soc., 2003, 125, 12710.
- (2003) J. Am. Chem. Soc. , vol.125 , pp. 12710
- Ko, C.¹ Levine, B.² Toniolo, A.³ Manohar, L.⁴ Olsen, S.⁵ Werner, H.-J.⁶ Martínez, T.J.⁷

7
- 46449096454
- M. de Groot, E. V. Gromov, H. Koppel, W. J. Buma J. Phys. Chem. B, 2008, 112, 4427.
- (2008) J. Phys. Chem. B , vol.112 , pp. 4427
- de Groot, M.¹ Gromov, E.V.² Koppel, H.³ Buma, W.J.⁴

8
- 20344369297
- E. V. Gromov, I. Burghardt, H. K. Köppel, L. S. Cederbaum J. Phys. Chem. A, 2005, 109, 4623.
- (2005) J. Phys. Chem. A , vol.109 , pp. 4623
- Gromov, E.V.¹ Burghardt, I.² Köppel, H.K.³ Cederbaum, L.S.⁴

9
- 0022430790
- T. E. Meyer Biochim. Biophys. Acta, 1985, 806, 175.
- (1985) Biochim. Biophys. Acta , vol.806 , pp. 175
- Meyer, T.E.¹

10
- 0028577744
- M. Baca, G. E. O. Borgstahl, M. Boissinot, M. P. Burke, D. R. Willimans, K. A. Slater, E. D. Getzoff Biochemistry, 1994, 33, 14369.
- (1994) Biochemistry , vol.33 , pp. 14369
- Baca, M.¹ Borgstahl, G.E.O.² Boissinot, M.³ Burke, M.P.⁴ Willimans, D.R.⁵ Slater, K.A.⁶ Getzoff, E.D.⁷

11
- 0029731183
- A. R. Kroon, W. D. Hoff, H. P. M. Fennema, J. Gijzen, G.-J. Koomen, J. W. Verhoeven, W. Crielaard, K. J. Hellingwerf J. Biol. Chem., 1996, 271, 31949.
- (1996) J. Biol. Chem. , vol.271 , pp. 31949
- Kroon, A.R.¹ Hoff, W.D.² Fennema, H.P.M.³ Gijzen, J.⁴ Koomen, G.-J.⁵ Verhoeven, J.W.⁶ Crielaard, W.⁷ Hellingwerf, K.J.⁸

12
- 0000340302
- P. Changenet-Barret, P. Plaza, M. M. Martin Chem. Phys. Lett., 2001, 336, 439.
- (2001) Chem. Phys. Lett. , vol.336 , pp. 439
- Changenet-Barret, P.¹ Plaza, P.² Martin, M.M.³

13
- 0037109026
- P. Changenet-Barret, A. Espagne, N. Katsonis, S. Charier, J.-B. Baudin, L. Jullien, P. Plaza, M. M. Martin Chem. Phys. Lett., 2002, 365, 285.
- (2002) Chem. Phys. Lett. , vol.365 , pp. 285
- Changenet-Barret, P.¹ Espagne, A.² Katsonis, N.³ Charier, S.⁴ Baudin, J.-B.⁵ Jullien, L.⁶ Plaza, P.⁷ Martin, M.M.⁸

14
- 25844451692
- I. B. Nielsen, S. Boyéronne, M. O. A. El Ghazaly, M. B. Kristensen, S. B. Nielsen, L. H. Andersen Biophys. J., 2005, 89, 2597.
- (2005) Biophys. J. , vol.89 , pp. 2597
- Nielsen, I.B.¹ Boyéronne, S.² El Ghazaly, M.O.A.³ Kristensen, M.B.⁴ Nielsen, S.B.⁵ Andersen, L.H.⁶

15
- 0031021311
- U. Genick, S. Devanathan, T. E. Meyer, I. L. Canestrelli, E. Williams, M. A. Cusanovich, G. Tollin, E. D. Getzoff Biochemistry, 1997, 36, 8.
- (1997) Biochemistry , vol.36 , pp. 8
- Genick, U.¹ Devanathan, S.² Meyer, T.E.³ Canestrelli, I.L.⁴ Williams, E.⁵ Cusanovich, M.A.⁶ Tollin, G.⁷ Getzoff, E.D.⁸

16
- 0037465835
- T. E. Meyer, S. Devanathan, T. Woo, E. D. Getzoff, G. Tollin, M. A. Cusanovich Biochemistry, 2003, 42, 3319.
- (2003) Biochemistry , vol.42 , pp. 3319
- Meyer, T.E.¹ Devanathan, S.² Woo, T.³ Getzoff, E.D.⁴ Tollin, G.⁵ Cusanovich, M.A.⁶

17
- 0000238454
- Z. He, C. H. Martin, R. Birge, K. F. Freed J. Phys. Chem. A, 2000, 104, 2939.
- (2000) J. Phys. Chem. A , vol.104 , pp. 2939
- He, Z.¹ Martin, C.H.² Birge, R.³ Freed, K.F.⁴

18
- 0035902354
- A. Sergi, M. Grüning, M. Ferrario, F. Buda J. Phys. Chem. B, 2001, 105, 4386.
- (2001) J. Phys. Chem. B , vol.105 , pp. 4386
- Sergi, A.¹ Grüning, M.² Ferrario, M.³ Buda, F.⁴

19
- 0035836710
- V. Molina, M. Merchán Proc. Natl. Acad. Sci. U. S. A., 2001, 98, 4299.
- (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 4299
- Molina, V.¹ Merchán, M.²

20
- 0036681395
- G. Groenhof, M. F. Lensink, H. J. C. Berendsen, A. E. Mark Proteins, 2002, 48, 212.
- (2002) Proteins , vol.48 , pp. 212
- Groenhof, G.¹ Lensink, M.F.² Berendsen, H.J.C.³ Mark, A.E.⁴

21
- 24344472624
- M. E. Moret, E. Tapavizca, L. Guidoni, U. Roehrig, M. Sulpizi, I. Tavernelli, U. Rothlisberger Chimia, 2005, 59, 493.
- (2005) Chimia , vol.59 , pp. 493
- Moret, M.E.¹ Tapavizca, E.² Guidoni, L.³ Roehrig, U.⁴ Sulpizi, M.⁵ Tavernelli, I.⁶ Rothlisberger, U.⁷

22
- 0012597289
- E. Runge, E. K. U. Gross Phys. Rev. Lett., 1984, 52, 997.
- (1984) Phys. Rev. Lett. , vol.52 , pp. 997
- Runge, E.¹ Gross, E.K.U.²

23
- 0012459223
- M. Petersilka, U. J. Grossman, E. K. U. Gross Phys. Rev. Lett., 1996, 76, 1212.
- (1996) Phys. Rev. Lett. , vol.76 , pp. 1212
- Petersilka, M.¹ Grossman, U.J.² Gross, E.K.U.³

24
- 0037173862
- M. Parac, S. Grimme J. Phys. Chem. A, 2002, 106, 6844.
- (2002) J. Phys. Chem. A , vol.106 , pp. 6844
- Parac, M.¹ Grimme, S.²

25
- 1642335199
- A. Dreuw, M. Head-Gordon J. Am. Chem. Soc., 2004, 126, 4007.
- (2004) J. Am. Chem. Soc. , vol.126 , pp. 4007
- Dreuw, A.¹ Head-Gordon, M.²

26
- 0000287603
- M. E. Casida, C. Jamorski, K. C. Casida, D. R. Salahub J. Chem. Phys., 1998, 108, 4439.
- (1998) J. Chem. Phys. , vol.108 , pp. 4439
- Casida, M.E.¹ Jamorski, C.² Casida, K.C.³ Salahub, D.R.⁴

27
- 0043269811
- M. A. L. Marques, X. Lopez, D. Varsano, A. Castro, A. Rubio Phys. Rev. Lett., 2003, 90, 258101.
- (2003) Phys. Rev. Lett. , vol.90 , pp. 258101
- Marques, M.A.L.¹ Lopez, X.² Varsano, D.³ Castro, A.⁴ Rubio, A.⁵

28
- 14844348202
- M. Wanko, M. Hoffmann, P. Strodel, A. Koslowski, W. Thiel, F. Neese, T. Frauenheim, M. Elstner J. Phys. Chem. B, 2005, 109, 3606.
- (2005) J. Phys. Chem. B , vol.109 , pp. 3606
- Wanko, M.¹ Hoffmann, M.² Strodel, P.³ Koslowski, A.⁴ Thiel, W.⁵ Neese, F.⁶ Frauenheim, T.⁷ Elstner, M.⁸

29
- 84988053595
- U. C. Singh, P. A. Kollman J. Comput. Chem., 1986, 6, 718.
- (1986) J. Comput. Chem. , vol.6 , pp. 718
- Singh, U.C.¹ Kollman, P.A.²

30
- 0037156101
- A. Laio, J. VandeVondele, U. Rothlisberger J. Chem. Phys., 2002, 116, 6941.
- (2002) J. Chem. Phys. , vol.116 , pp. 6941
- Laio, A.¹ VandeVondele, J.² Rothlisberger, U.³

31
- 85033421105
- CPMD, Copyright IBM Corp. 1990-2008, Copyright MPI für Festkörperforschung Stuttgart 1997-2001
- CPMD, www.cpmd.org Copyright IBM Corp. 1990-2008, Copyright MPI für Festkörperforschung Stuttgart 1997-2001

32
- 84881454506
- Gaussian, Inc., Pittsburgh PA
- M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, J. V. G. Zakrzewski, J. A. Montgomery, Jr, R. E. Stratmann, J. C. Burant, S. Dapprich, J. M. Millam, A. D. Daniels, K. N. Kudin, M. C. Strain, O. Farkas, J. Tomasi, V. Barone, M. Cossi, R. Cammi, B. Mennucci, C. Pomelli, C. Adamo, S. Clifford, J. Ochterski, G. A. Petersson, P. Y. Ayala, Q. Cui, K. Morokuma, D. K. Malick, A. D. Rabuck, K. Raghavachari, J. B. Foresman, J. Cioslowski, J. V. Ortiz, A. G. Baboul, B. B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. Gomperts, R. L. Martin, D. J. Fox, T. Keith, M. A. Al-Laham, C. Y. Peng, A. Nanayakkara, M. Challacombe, P. M. W. Gill, B. Johnson, W. Chen, M. W. Wong, J. L. Andres, C. Gonzalez, M. Head-Gordon, E. S. Replogle, and J. A. Pople, GAUSSIAN 98 (Revision A.9), Gaussian, Inc., Pittsburgh PA, 1998
- (1998) GAUSSIAN 98 (Revision A.9)
- Frisch, M.J.¹ Trucks, G.W.² Schlegel, H.B.³ Scuseria, G.E.⁴ Robb, M.A.⁵ Cheeseman, J.R.⁶ Zakrzewski, J.V.G.⁷ Montgomery, J.A.⁸ Stratmann, R.E.⁹ Burant, J.C.¹⁰ Dapprich, S.¹¹ Millam, J.M.¹² Daniels, A.D.¹³ Kudin, K.N.¹⁴ Strain, M.C.¹⁵ Farkas, O.¹⁶ Tomasi, J.¹⁷ Barone, V.¹⁸ Cossi, M.¹⁹ Cammi, R.²⁰ more..

33
- 33645426115
- N. Troullier, J. L. Martins Phys. Rev. B, 1991, 43, 1993.
- (1991) Phys. Rev. B , vol.43 , pp. 1993
- Troullier, N.¹ Martins, J.L.²

34
- 4243943295
- J. P. Perdew, K. Burke, M. Ernzerhof Phys. Rev. Lett., 1996, 77, 3865.
- (1996) Phys. Rev. Lett. , vol.77 , pp. 3865
- Perdew, J.P.¹ Burke, K.² Ernzerhof, M.³

35
- 0009485123
- G. J. Martyna, M. E. Tuckerman J. Chem. Phys., 1999, 110, 2810.
- (1999) J. Chem. Phys. , vol.110 , pp. 2810
- Martyna, G.J.¹ Tuckerman, M.E.²

36
- 4143095330
- R. A. Kendall, T. H. Dunning, Jr J. Chem. Phys., 1992, 96, 6796.
- (1992) J. Chem. Phys. , vol.96 , pp. 6796
- Kendall, R.A.¹ Dunning, T.H.²

37
- 0000189651
- A. D. Becke J. Chem. Phys., 1993, 98, 5648.
- (1993) J. Chem. Phys. , vol.98 , pp. 5648
- Becke, A.D.¹

38
- 21444444464
- C. Adamo, G. E. Scuseria J. Chem. Phys., 1999, 111, 2889.
- (1999) J. Chem. Phys. , vol.111 , pp. 2889
- Adamo, C.¹ Scuseria, G.E.²

39
- 4243553426
- A. D. Becke Phys. Rev. A, 1988, 38, 3098.
- (1988) Phys. Rev. A , vol.38 , pp. 3098
- Becke, A.D.¹

40
- 0010952915
- C. Lee, W. Yang, R. G. Parr Phys. Rev. B, 1988, 37, 758.
- (1988) Phys. Rev. B , vol.37 , pp. 758
- Lee, C.¹ Yang, W.² Parr, R.G.³

41
- 0001260561
- S. Hirata, M. Head-Gordon Chem. Phys. Lett., 1999, 314, 291.
- (1999) Chem. Phys. Lett. , vol.314 , pp. 291
- Hirata, S.¹ Head-Gordon, M.²

42
- 0012324693
- N. L. Doltsinis, M. Sprik Chem. Phys. Lett., 2000, 330, 563.
- (2000) Chem. Phys. Lett. , vol.330 , pp. 563
- Doltsinis, N.L.¹ Sprik, M.²

43
- 85033422106
- PhD Thesis, King’s College London, University of London
- E. Muguruza González, PhD Thesis, King’s College London, University of London, 2007
- (2007)
- Muguruza González, E.¹

44
- 0003544049
- BIOMOS b.v. Zürich, Groningen, The Netherlands
- W. F. van Gusteren, S. R. Billeter, A. A. Eising, P. H. Hünenberger, P. Krüger, A. E. Mark, W. R. P. Scott, and I. G. Tironi, Biomolecular Simulation: GROMOS96 Manual and User Guide, BIOMOS b.v. Zürich, Groningen, The Netherlands, 1996
- (1996) Biomolecular Simulation: GROMOS96 Manual and User Guide
- van Gusteren, W.F.¹ Billeter, S.R.² Eising, A.A.³ Hünenberger, P.H.⁴ Krüger, P.⁵ Mark, A.E.⁶ Scott, W.R.P.⁷ Tironi, I.G.⁸

45
- 34248135998
- E. J. M. Leenders, L. Guidoni, U. Rothlisberger, J. Vreede, P. G. Bolhuis, E. J. Meijer J. Phys. Chem. B, 2007, 111, 3765.
- (2007) J. Phys. Chem. B , vol.111 , pp. 3765
- Leenders, E.J.M.¹ Guidoni, L.² Rothlisberger, U.³ Vreede, J.⁴ Bolhuis, P.G.⁵ Meijer, E.J.⁶

46
- 0043125483
- E. D. Getzoff, K. N. Gutwin, U. K. Genick Nat. Struct. Biol., 2003, 10, 663.
- (2003) Nat. Struct. Biol. , vol.10 , pp. 663
- Getzoff, E.D.¹ Gutwin, K.N.² Genick, U.K.³

47
- 85033422097
- www.rcsb.org/pdb

48
- 0037140791
- W. L. Ryan, D. J. Gordon, D. H. Levy J. Am. Chem. Soc., 2002, 124, 6194.
- (2002) J. Am. Chem. Soc. , vol.124 , pp. 6194
- Ryan, W.L.¹ Gordon, D.J.² Levy, D.H.³

49
- 22944484066
- M. de Groot, W. J. Buma J. Phys. Chem. A, 2005, 109, 6135.
- (2005) J. Phys. Chem. A , vol.109 , pp. 6135
- de Groot, M.¹ Buma, W.J.²

50
- 33845215645
- M. de Groot, W. J. Buma, E. V. Gromov, I. Burghardt, H. Köppel, L. S. Cederbaum J. Chem. Phys., 2006, 125, 204303.
- (2006) J. Chem. Phys. , vol.125 , pp. 204303
- de Groot, M.¹ Buma, W.J.² Gromov, E.V.³ Burghardt, I.⁴ Köppel, H.⁵ Cederbaum, L.S.⁶

51
- 2342643462
- L. L. Premvardhan, F. Buda, M. A. van der Horst, D. C. Lührs, K. J. Hellingwerf, R. van Grondelle J. Phys. Chem. B, 2004, 108, 5138.
- (2004) J. Phys. Chem. B , vol.108 , pp. 5138
- Premvardhan, L.L.¹ Buda, F.² van der Horst, M.A.³ Lührs, D.C.⁴ Hellingwerf, K.J.⁵ van Grondelle, R.⁶

52
- 0037451468
- S. Grimme, M. Parac ChemPhysChem, 2003, 3, 292.
- (2003) ChemPhysChem , vol.3 , pp. 292
- Grimme, S.¹ Parac, M.²

53
- 0042881198
- A. Dreuw, J. L. Weisman, M. Head-Gordon J. Chem. Phys., 2003, 119, 2943.
- (2003) J. Chem. Phys. , vol.119 , pp. 2943
- Dreuw, A.¹ Weisman, J.L.² Head-Gordon, M.³

54
- 0001132752
- J. P. Perdew, R. G. Parr, M. Levy, J. L. Balduz Phys. Rev. Lett., 1982, 49, 1691.
- (1982) Phys. Rev. Lett. , vol.49 , pp. 1691
- Perdew, J.P.¹ Parr, R.G.² Levy, M.³ Balduz, J.L.⁴

55
- 18144420853
- M. Lein, S. Kümmel Phys. Rev. Lett., 2005, 94, 143003.
- (2005) Phys. Rev. Lett. , vol.94 , pp. 143003
- Lein, M.¹ Kümmel, S.²

56
- 23344452814
- N. T. Maitra J. Chem. Phys., 2005, 122, 234104.
- (2005) J. Chem. Phys. , vol.122 , pp. 234104
- Maitra, N.T.¹

57
- 33750971716
- N. T. Maitra, D. G. Tempel J. Chem. Phys., 2006, 125, 184111.
- (2006) J. Chem. Phys. , vol.125 , pp. 184111
- Maitra, N.T.¹ Tempel, D.G.²

58
- 0001297864
- O. V. Gritensko, P. R. T. Schipper, E. Baerends Chem. Phys. Lett., 1999, 302, 199.
- (1999) Chem. Phys. Lett. , vol.302 , pp. 199
- Gritensko, O.V.¹ Schipper, P.R.T.² Baerends, E.³

59
- 84962408650
- R. Nifosí, P. Amat, Tozzini J. Comput. Chem., 2007, 28, 2366.
- (2007) J. Comput. Chem. , vol.28 , pp. 2366
- Nifosí, R.¹ Amat, P.² Tozzini³

60
- 31044439156
- I.-R. Lee, W. Lee, A. H. Zewail Proc. Natl. Acad. Sci. U. S. A., 2006, 103, 258.
- (2006) Proc. Natl. Acad. Sci. U. S. A. , vol.103 , pp. 258
- Lee, I.-R.¹ Lee, W.² Zewail, A.H.³

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