메뉴 건너뛰기




Volumn 5, Issue 4, 2009, Pages

Systems Analysis of Bioenergetics and Growth of the Extreme Halophile Halobacterium salinarum

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; BIOCHEMISTRY; BIOMASS; ECOLOGY; FERMENTATION; METABOLISM; METABOLITES; MICROORGANISMS; NUTRIENTS; SUBSTRATES; SYSTEMS ANALYSIS;

EID: 66349119887     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000332     Document Type: Article
Times cited : (40)

References (41)
  • 1
    • 0032144042 scopus 로고
    • The structure and mechanism of the family of retinal proteins from halophilic archaea
    • Oesterhelt D (1988) The structure and mechanism of the family of retinal proteins from halophilic archaea. Curr Opin Struct Biol 8: 489-500.
    • (1988) Curr Opin Struct Biol , vol.8 , pp. 489-500
    • Oesterhelt, D.1
  • 2
    • 66349102471 scopus 로고    scopus 로고
    • Hampp N, Neebe M (2006) Bacteriorhodopsin-based multi-level optical security features. In: van Renesse R, ed. Optical Security and Counterfeit Deterrence Techniques VI. Bellingham, WA: SPIE. pp 6075-60750M, 1-9. Metabolism of Halobacterium salinarum PLoS Computational Biology | www.ploscompbiol.org 12 April 2009 | 5 | Issue 4 | e1000332
    • Hampp N, Neebe M (2006) Bacteriorhodopsin-based multi-level optical security features. In: van Renesse R, ed. Optical Security and Counterfeit Deterrence Techniques VI. Bellingham, WA: SPIE. pp 6075-60750M, 1-9. Metabolism of Halobacterium salinarum PLoS Computational Biology | www.ploscompbiol.org 12 April 2009 | Volume 5 | Issue 4 | e1000332
  • 3
    • 27844563168 scopus 로고    scopus 로고
    • Polarization multiplexed write-once-read-many optical data storage in bacteriorhodopsin films
    • Yao N, Lei M, Ren L, Menke N, Wang Y, et al. (2005) Polarization multiplexed write-once-read-many optical data storage in bacteriorhodopsin films. Opt Lett 30: 3060-3062.
    • (2005) Opt Lett , vol.30 , pp. 3060-3062
    • Yao, N.1    Lei, M.2    Ren, L.3    Menke, N.4    Wang, Y.5
  • 4
    • 1942530923 scopus 로고    scopus 로고
    • Bacteriorhodopsin as a high-resolution, high-capacity buffer for digital holographic measurements
    • Barnhardt D, Koek W, Juchem T, Hampp N, Coupland J, et al. (2004) Bacteriorhodopsin as a high-resolution, high-capacity buffer for digital holographic measurements. Meas Sci Technol 15: 639-646.
    • (2004) Meas Sci Technol , vol.15 , pp. 639-646
    • Barnhardt, D.1    Koek, W.2    Juchem, T.3    Hampp, N.4    Coupland, J.5
  • 5
    • 0032987196 scopus 로고    scopus 로고
    • Closing in on bacteriorhodopsin: Progress in understanding the molecule
    • Haupts U, Tittor J, Oesterhelt D (1999) Closing in on bacteriorhodopsin: progress in understanding the molecule. Annu Rev Biophys Biomol Struct 28: 367-399.
    • (1999) Annu Rev Biophys Biomol Struct , vol.28 , pp. 367-399
    • Haupts, U.1    Tittor, J.2    Oesterhelt, D.3
  • 6
    • 0032466956 scopus 로고    scopus 로고
    • Studies of the electron transport chain of the euryarcheon Halobacterium salinarum: Indications for a type II NADH dehydrogenase and a complex III analog
    • Sreeramulu K, Schmidt C, Schäfer G, Anemüller S (1998) Studies of the electron transport chain of the euryarcheon Halobacterium salinarum: indications for a type II NADH dehydrogenase and a complex III analog. J Bioenerg Biomembr 30: 443-453.
    • (1998) J Bioenerg Biomembr , vol.30 , pp. 443-453
    • Sreeramulu, K.1    Schmidt, C.2    Schäfer, G.3    Anemüller, S.4
  • 7
    • 0015908026 scopus 로고
    • Light inhibition of respiration in Halobacterium halobium
    • Oesterhelt D, Krippahl G (1973) Light inhibition of respiration in Halobacterium halobium. FEBS Lett 36: 72-76.
    • (1973) FEBS Lett , vol.36 , pp. 72-76
    • Oesterhelt, D.1    Krippahl, G.2
  • 9
    • 0013872826 scopus 로고
    • Arginine metabolism in Halobacterium Salinarum, an obligately halophilic bacterium
    • Dundas IE, Halvorson HO (1966) Arginine metabolism in Halobacterium Salinarum, an obligately halophilic bacterium. J Bacteriol 91: 113-119.
    • (1966) J Bacteriol , vol.91 , pp. 113-119
    • Dundas, I.E.1    Halvorson, H.O.2
  • 10
    • 0017807533 scopus 로고
    • Potassium uniport and ATP synthesis in Halobacterium halobium
    • Wagner G, Hartmann R, Oesterhelt D (1978) Potassium uniport and ATP synthesis in Halobacterium halobium. Eur J Biochem 89: 169-179.
    • (1978) Eur J Biochem , vol.89 , pp. 169-179
    • Wagner, G.1    Hartmann, R.2    Oesterhelt, D.3
  • 11
    • 27144533653 scopus 로고    scopus 로고
    • Reconstructing the metabolic network of a bacterium from its genome
    • Francke C, Siezen RJ, Teusink B (2005) Reconstructing the metabolic network of a bacterium from its genome. Trends Microbiol 13: 550-558.
    • (2005) Trends Microbiol , vol.13 , pp. 550-558
    • Francke, C.1    Siezen, R.J.2    Teusink, B.3
  • 13
    • 0037385718 scopus 로고    scopus 로고
    • Genome scale microbial in silico models: The constraints-based approach
    • Price N, Papin J, Schilling C, Palsson B (2003) Genome scale microbial in silico models: the constraints-based approach. Trends Biochem Sci 21: 162-169.
    • (2003) Trends Biochem Sci , vol.21 , pp. 162-169
    • Price, N.1    Papin, J.2    Schilling, C.3    Palsson, B.4
  • 14
    • 17844405878 scopus 로고    scopus 로고
    • Genome scale reconstruction of the metabolic network in Staphylococcus aureus N315: An initial draft to the two-dimensional annotation
    • Becker S, Palsson B (2005) Genome scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation. BMC Microbiology 5: 8.
    • (2005) BMC Microbiology , vol.5 , pp. 8
    • Becker, S.1    Palsson, B.2
  • 15
    • 38349178598 scopus 로고    scopus 로고
    • Reconstruction, modeling & analysis of Halobacterium salinarum R-1 metabolism
    • Gonzalez O, Gronau S, Falb M, Pfeiffer F, Mendoza E, et al. (2008) Reconstruction, modeling & analysis of Halobacterium salinarum R-1 metabolism. Mol Biosyst 4: 148-159.
    • (2008) Mol Biosyst , vol.4 , pp. 148-159
    • Gonzalez, O.1    Gronau, S.2    Falb, M.3    Pfeiffer, F.4    Mendoza, E.5
  • 16
    • 0035125986 scopus 로고    scopus 로고
    • In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data
    • Edwards J, Ibarra R, Palsson B (2000) In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nat Biotechnol 19: 125-130.
    • (2000) Nat Biotechnol , vol.19 , pp. 125-130
    • Edwards, J.1    Ibarra, R.2    Palsson, B.3
  • 17
    • 0033580813 scopus 로고    scopus 로고
    • System properties of the Haemophilus influezae Rd metabolic genotype
    • Edwards J, Palsson B (1999) System properties of the Haemophilus influezae Rd metabolic genotype. J Biol Chem 274: 17410-17416.
    • (1999) J Biol Chem , vol.274 , pp. 17410-17416
    • Edwards, J.1    Palsson, B.2
  • 18
    • 0035017810 scopus 로고    scopus 로고
    • Flux-balance analysis of mitochondrial energy metabolism: Consequences of systemic stoichiometric constraints
    • Ramakrishna R, Edwards J, McCulloch A, Palsson B (2001) Flux-balance analysis of mitochondrial energy metabolism: consequences of systemic stoichiometric constraints. Am J Physiol Regul Integr Comp Physiol 280: R695-R704.
    • (2001) Am J Physiol Regul Integr Comp Physiol , vol.280
    • Ramakrishna, R.1    Edwards, J.2    McCulloch, A.3    Palsson, B.4
  • 19
    • 0028146781 scopus 로고
    • Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110
    • Varma A, Palsson B (1994) Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. Appl Environ Microbiol 60: 3724-3731.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 3724-3731
    • Varma, A.1    Palsson, B.2
  • 21
    • 34447523907 scopus 로고    scopus 로고
    • Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli. Mol Syst Biol 3: 119
    • Schuetz R, Kuepfer L, Sauer U (2007) Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli. Mol Syst Biol 3: 119. Biol 2: 62.
    • (2007) Biol , vol.2 , pp. 62
    • Schuetz, R.1    Kuepfer, L.2    Sauer, U.3
  • 24
    • 0030891286 scopus 로고    scopus 로고
    • Electron transfer proteins from the haloalkaliphilic archaeon Natronobacterium pharaonis: Possible components of the respiratory chain include cytochrome bc and a terminal oxidase cytochrome ba3
    • Scharf B, Wittenberg R, Engelhard M (1997) Electron transfer proteins from the haloalkaliphilic archaeon Natronobacterium pharaonis: possible components of the respiratory chain include cytochrome bc and a terminal oxidase cytochrome ba3. Biochemistry 36: 4471-4479.
    • (1997) Biochemistry , vol.36 , pp. 4471-4479
    • Scharf, B.1    Wittenberg, R.2    Engelhard, M.3
  • 25
    • 25844454133 scopus 로고    scopus 로고
    • Living with two extremes: Conclusions from the genome sequence of Natronomonas pharaonis
    • Falb M, Pfeiffer F, Palm P, Rodewald K, Hickmann V, et al. (2005) Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis. Genome Res 15: 1336-1343.
    • (2005) Genome Res , vol.15 , pp. 1336-1343
    • Falb, M.1    Pfeiffer, F.2    Palm, P.3    Rodewald, K.4    Hickmann, V.5
  • 26
    • 33751385403 scopus 로고
    • Halocyanin, an archaebacterial blue copper protein (type I) from Natronobacterium pharaonis
    • Scharf B, Engelhard M (1993) Halocyanin, an archaebacterial blue copper protein (type I) from Natronobacterium pharaonis. Biochemistry 32: 12894-12900.
    • (1993) Biochemistry , vol.32 , pp. 12894-12900
    • Scharf, B.1    Engelhard, M.2
  • 27
    • 40449120475 scopus 로고    scopus 로고
    • Evolution in the laboratory: The genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1
    • Pfeiffer F, Schuster SC, Broicher A, Falb M, Palm P, et al. (2008) Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. Genomics 91: 335-346.
    • (2008) Genomics , vol.91 , pp. 335-346
    • Pfeiffer, F.1    Schuster, S.C.2    Broicher, A.3    Falb, M.4    Palm, P.5
  • 28
    • 0017762472 scopus 로고
    • Quantitative aspects of energy conversion in halobacteria
    • Hartmann R, Sickinger H, Oesterhelt D (1977) Quantitative aspects of energy conversion in halobacteria. FEBS Lett 82: 1-6.
    • (1977) FEBS Lett , vol.82 , pp. 1-6
    • Hartmann, R.1    Sickinger, H.2    Oesterhelt, D.3
  • 29
    • 33846015888 scopus 로고    scopus 로고
    • Analysis of growth of Lactobacillus plantarum WCSF1 on a complex medium using a genome-scale metabolic model
    • Teusink B, Wiersma A, Molenaar D, Francke C, de Vos W, et al. (2006) Analysis of growth of Lactobacillus plantarum WCSF1 on a complex medium using a genome-scale metabolic model. J Biol Chem 281: 40041-40048.
    • (2006) J Biol Chem , vol.281 , pp. 40041-40048
    • Teusink, B.1    Wiersma, A.2    Molenaar, D.3    Francke, C.4    de Vos, W.5
  • 30
    • 1642457253 scopus 로고    scopus 로고
    • The effects of alternate optimal solutions in constraints-based genome-scale metabolic models
    • Mahadevan R, Schilling C (2003) The effects of alternate optimal solutions in constraints-based genome-scale metabolic models. Metab Eng 5: 264-276.
    • (2003) Metab Eng , vol.5 , pp. 264-276
    • Mahadevan, R.1    Schilling, C.2
  • 31
    • 4344670936 scopus 로고    scopus 로고
    • Bow ties, metabolism and disease
    • Csete M, Doyle J (2004) Bow ties, metabolism and disease. Trends Biotechnol 22: 446-450.
    • (2004) Trends Biotechnol , vol.22 , pp. 446-450
    • Csete, M.1    Doyle, J.2
  • 32
    • 0037069421 scopus 로고    scopus 로고
    • Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach
    • Pan NBM, Goo Y, Yi E, Goodlet D, Dimitrov K, et al. (2002) Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach. Proc Natl Acad Sci U S A 99: 14913-14918.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 14913-14918
    • Pan, N.B.M.1    Goo, Y.2    Yi, E.3    Goodlet, D.4    Dimitrov, K.5
  • 33
    • 84986744038 scopus 로고
    • Population dynamics of Dunaliella parva in the Dead Sea
    • Oren A, Shilo M (1982) Population dynamics of Dunaliella parva in the Dead Sea. Limnol Oceanogr 27: 201-211.
    • (1982) Limnol Oceanogr , vol.27 , pp. 201-211
    • Oren, A.1    Shilo, M.2
  • 34
    • 0029509114 scopus 로고    scopus 로고
    • Oren A, Gurevich P (1995) Dynamics of a bloom of halophilic archaea in the Dead Sea. Hydrobiologia 315: 149-158.
    • Oren A, Gurevich P (1995) Dynamics of a bloom of halophilic archaea in the Dead Sea. Hydrobiologia 315: 149-158.
  • 35
    • 0020924351 scopus 로고
    • Population dynamics of halobacteria in the Dead Sea water column
    • Oren A (1983) Population dynamics of halobacteria in the Dead Sea water column. Limnol Oceanogr 28: 1094-1103.
    • (1983) Limnol Oceanogr , vol.28 , pp. 1094-1103
    • Oren, A.1
  • 36
    • 0000324331 scopus 로고    scopus 로고
    • Survival of halobacteria within fluid inclusions in salt crystals
    • Grant WD, Norton CF (1998) Survival of halobacteria within fluid inclusions in salt crystals. J Gen Microbiol 134: 1365-1373.
    • (1998) J Gen Microbiol , vol.134 , pp. 1365-1373
    • Grant, W.D.1    Norton, C.F.2
  • 38
    • 0034687374 scopus 로고    scopus 로고
    • Isolation of a 250 million-year-old halotolerant bacterium from a primary salt crystal
    • Vreeland R, Rosenzweig W, Powers D (2000) Isolation of a 250 million-year-old halotolerant bacterium from a primary salt crystal. Nature 407: 897-900.
    • (2000) Nature , vol.407 , pp. 897-900
    • Vreeland, R.1    Rosenzweig, W.2    Powers, D.3
  • 39
    • 0028104576 scopus 로고
    • Halococcus salifodinae sp. no v., an archaeal isolate from an Austrian salt mine
    • Denner E, McGenity T, Busse H, Grant W, Wanner G, et al. (1994) Halococcus salifodinae sp. no v., an archaeal isolate from an Austrian salt mine. Int J Syst Bacteriol 44: 774-780.
    • (1994) Int J Syst Bacteriol , vol.44 , pp. 774-780
    • Denner, E.1    McGenity, T.2    Busse, H.3    Grant, W.4    Wanner, G.5
  • 40
    • 0027210629 scopus 로고
    • Archaeal halophiles from two British salt mines
    • Norton C, McGenity T, Grant W (1993) Archaeal halophiles from two British salt mines. J Gen Microbiol 139: 1077-1081.
    • (1993) J Gen Microbiol , vol.139 , pp. 1077-1081
    • Norton, C.1    McGenity, T.2    Grant, W.3
  • 41
    • 33846061120 scopus 로고    scopus 로고
    • 13C-based flux analysis
    • 13C-based flux analysis. Mol Syst
    • (2006) Mol Syst
    • Sauer, U.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.