Molecular cloning, expression profiling and functional analyses of a cDNA encoding isopentenyl diphosphate isomerase from Gossypium barbadense

Bioscience Reports

Volumn 29, Issue 2, 2009, Pages 111-119

  Wang, Yechun ^a   Qiu, Chengxiang ^a   Zhang, Fei ^a   Guo, Binhui ^a   Miao, Zhiqi ^a   Sun, Xiaofen ^b   Tang, Kexuan ^a,b  

^a SHANGHAI JIAO TONG UNIVERSITY   (China)

^b FUDAN UNIVERSITY   (China)

Author keywords

Gossypium barbadense; Isopentenyl diphosphate (IPP) isomerase (IPI); Isoprenoid biosynthetic pathway; Rapid amplification of cDNA ends (RACE); Sesquiterpene phytoalexin; Verticillium dahliae Kleb

Indexed keywords

BETA CAROTENE; COMPLEMENTARY DNA; ISOENZYME; ISOMERASE; ISOPENTENYL DIPHOSPHATE DELTA ISOMERASE; ISOPENTENYLDIPHOSPHATE DELTA-ISOMERASE;

AMINO ACID SEQUENCE; ARTICLE; BIOLOGY; BIOSYNTHESIS; CHEMISTRY; COTTON; ENZYMOLOGY; ESCHERICHIA COLI; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC TRANSFORMATION; GENETICS; ISOELECTRIC POINT; METABOLISM; METHODOLOGY; MOLECULAR CLONING; MOLECULAR GENETICS; MOLECULAR WEIGHT; NUCLEOTIDE SEQUENCE; PLANT GENE; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; BASE SEQUENCE; BETA CAROTENE; CARBON-CARBON DOUBLE BOND ISOMERASES; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; DNA, COMPLEMENTARY; ESCHERICHIA COLI; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GOSSYPIUM; ISOELECTRIC POINT; ISOENZYMES; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; SEQUENCE HOMOLOGY, AMINO ACID; TRANSFORMATION, GENETIC;

EID: 66349106928     PISSN: 01448463     EISSN: 15734935     Source Type: Journal    
DOI: 10.1042/BSR20070052     Document Type: Article

References (34)

1. Sacchettini, J. C. and Poulter, C. D. (1997) Creating isoprenoid diversity. Science 277, 1788-1789
2. Eisenreich, W., Rohdich, F. and Bacher, A. (2001) Deoxyxylulose phosphate pathway to terpenoids. Trends Plant Sci. 6, 78-84
3. Threlfall, D. R. and Whitehead, I. M. (1991) Terpenoid phytoalexins: aspects of biosynthesis, catabolism and regulation. In Ecological Chemistry and Biochemistry of Plant Terpenoids (Harborne, J. B. and Tomas-Barberan, F. A., eds), pp. 159-208 Clarendon Press, Oxford
4. Liu, C. J., Heinstein, P. and Chen, X. Y. (1999) Expression pattern of genes encoding farnesyl diphosphate synthase and sesquiterpene cyclase in cotton suspension-cultured cells treated with fungal elicitors. Mol Plant Microbe Interact. 12, 1095-1104
5. Oh, S. K., Kang, H., Shin, D. H., Yang, J. and Kyung-Hwan, H. (2000) Molecular cloning and characterization of a functional cDNA clone encoding isopentenyl diphosphate isomerase from Hevea brasiliensis. J Plant Physiol. 157, 549-557
6. Hahn, F. M., Hurlburt, A. P. and Poulter, C. D. (1999) Escherichia coli open reading frame 696 is idi, a nonessential gene encoding isopentenyl diphosphate isomerase. J. Bacteriol. 181, 4499-4504
7. Albrecht, M. and Sandmann, G. (1994) Light-stimulated carotenoid biosynthesis during transformation of maize etioplasts is regulated by increased activity of isopentenyl pyrophosphate isomerase. Plant Physiol. 105, 529-534
8. Kajiwara, S., Fraser, P. D., Kondo, K. and Misawa, N. (1997) Expression of an exogenous isopentenyl diphosphate isomerase gene enhances isoprenoid biosynthesis in Escherichia coli. Biochem. J. 324, 421-426
9. Wang, C. W., Oh, M. K. and Liao, J. C. (1999) Engineered isoprenoid pathway enhances astaxanthin production in Escherichia coli. Biotechnol Bioeng. 62, 235-241
10. Gallagher, C. E., Cervantes-Cervantes, M. and Wurtzel, E. T. (2003) Surrogate biochemistry: use of Escherichia coli to identify plant cDNAs that impact metabolic engineering of carotenoid accumulation. Appl. Microbiol. Biotechnol. 60, 713-719
11. Bell, A. A., Stipanovic, R. D., Mace, M. E. and Kohel, R. J. (1994) Genetic manipulation of terpenoid phytoalexins in Gossypium: effects on disease resistance. Rec. Adv. Phytochem. 28, 231-249
12. Loguercio, L. L. and Wilkins, T. A. (1998) Two genomic clones encoding 3-hydroxy-3-methylglutaryl-coenzyme reductase (Accession nos, AF038045 and AF038046) from cotton (Gossypium hirsutum L.). Plant Physiol. 116, 869
13. Blanc, V. M. and Pichersky, E. (1995) Nucleotide sequence of a Clarkia breweri cDNA clone of Ipil, a gene encoding isopentenyl pyrophosphate isomerase. Plant Physiol. 108, 855-856
14. Campbell, M., Hahn, F. M., Poulter, C. D. and Leustek, T. (1998) Analysis of the isopentenyl diphosphate isomerase gene family from Arabidopsis thaliana. Plant Mol. Biol. 36, 323-328
15. Cunningham, Jr., F. X. and Gantt, E. (2000) Identification of multi-gene families encoding isopentenyl diphosphate isomerase in plants by heterologous complementation in Escherichia coli. Plant Cell Physiol. 41, 119-123
16. Nakamura, A., Shimada, H., Masuda, T., Ohta, H. and Takamiya, K. (2001) Two distinct isopentenyl diphosphate isomerases in cytosol and plastid are differentially induced by environmental stresses in tobacco. FEBS Lett. 506, 61-64
17. Shelton, D. A., Leach, D. N. and Henry, R. J. (2004) Isopentenyl pyrophosphate isomerases from Melaleuca alternifolia (Cheel) and their role in isoprenoid biosynthesis. J. Horticult. Sci. Biotechnol. 79, 289-292
18. Qin, J., Zhao, J. Y., Zuo, K. J., Cao, Y. F., Ling, H., Sun, X. F. and Tang, K. X. (2004) Isolation and characterization of an ERF-like gene from Gossypium barbadense. Plant Sci. 167, 1383-1389
19. Jaakola, L., Pirtila, A. M., Halonen, M. and Hohtola, A. (2001) Isolation of high quality RNA from bilberry (Vaccinium myrtillus L.) fruit. Mol. Biotechnol. 19, 201-203
20. Paterson, A. H., Brubaker, C. L. and Wendel, J. F. (1993) A rapid method for extraction of cotton (Gossypium ssp.) genomic DNA suitable for RFLP and PCR analysis. Plant Mol. Biol. Rep. 11, 122-127
21. Ji, S. J, Lu, Y. C., Feng, J. X., Wei, G., Li, J., Shi, Y. H., Fu, Q., Liu, D., Luo, J. C. and Zhu, Y. X. (2003) Isolation and analyses of genes preferentially expressed during early cotton fiber development by subtractive PCR and cDNA array. Nucleic Acids Res. 31, 2534-2543
22. Misawa, N., Satomi, Y., Kondo, K., Yokoyama, A., Kajiwara, S., Saito, T., Ohtani, T. and Miki, W. (1995) Structure and functional analysis of a marine bacterial carotenoid biosynthesis gene cluster and astaxanthin biosynthetic pathway proposed at the gene level. J. Bacteriol. 177, 6575-6584
23. Kim, S. W. and Keasling, J. D. (2001) Metabolic engineering of the nonmevalonate isopentenyl diphosphate synthesis pathway in Escherichia coli enhances lycopene production. Biotechnol. Bioeng. 72, 408-415
24. Kaneda, K., Kuzuyama, T., Takagi, M., Hayakawa, Y. and Seto, H. (2001) An unusual isopentenyl diphosphate isomerase found in the mevalonate pathway gene cluster from Streptomyces sp. strain CL190. Proc. Natl. Acad. Sci. U.S.A. 98, 932-937
25. Barkley, S. J., Desai, S. B. and Poulter, C. D. (2004) Type II isopentenyl diphosphate isomerase from Synechocystis sp. strain PCC 6803. J. Bacteriol. 186, 8156-8158
26. Street, I. P., Coffman, H. R., Baker, J. A. and Poulter, C. D. (1994) Identification of Cys139 and Glu207 as catalytically important groups in the active site of isopentenyl diphosphate: dimethylallyl diphosphate isomerase. Biochemistry 33, 4212-4217
27. Durbecq, V., Sainz, G., Oudjama, Y., Clantin, B., Gilles, C. B., Tricot, C., Caillet, J., Stalon, V., Droogmans, L. and Villeret, V. (2001) Crystal structure of isopentenyl diphosphate: dimethylallyl diphosphate isomerase. EMBO J. 20, 1530-1537
28. Wouters, J., Oudjama, Y., Barkley, S. J., Tricot, C., Stalon, V., Droogmans, L. and Poulter, C. D. (2003) Catalytic mechanism of Escherichia coli isopentenyl diphosphate isomerase involves Cys-67, Glu-116, and Tyr-104 as suggested by crystal structures of complexes with transition state analogues and irreversible inhibitors. J. Biol. Chem. 278, 11903-11908
29. Wouters, J., Oudjama, Y., Ghosh, S., Stalon, V., Droogmans, L. and Oldfield, E. (2003) Structure and mechanism of action of isopentenylpyrophosphate-dimethylallylpyrophosphate isomerase. J. Am. Chem. Soc. 125, 3198-3199
30. Zhang, H. W., Huang, Z. J., Xie, B. Y., Chen, Q., Tian, X., Zhang, X. L., Zhang, H. B., Lu, X. Y., Huang, D. F. and Huang, R. F. (2004) The ethylene-, jasmonate-, abscisic acid- and NaCl-responsive tomato transcription factor JERF1 modulates expression of GCC box-containing genes and salt tolerance in tobacco. Planta 220, 262-270
31. Cunningham, Jr., F. X., Pogson, B., Sun, Z., McDonald, K. A., DellaPenna, D. and Gantt, E. (1996) Functional analysis of the β and ε lycopene cyclase enzymes of arabidopsis reveals a mechanism for control of cyclic carotenoid formation. Plant Cell 8, 1613-1626
32. Sun, Z., Cunningham, Jr., F. X. and Gantt, E. (1998) Differential expression of two isopentenyl pyrophosphate isomerases and enhanced carotenoid accumulation in a unicellular chlorophyte. Proc. Natl. Acad. Sci. U.S.A. 95, 11482-11488
33. Sun, Z., Gantt, E. and Cunningham, Jr., F. X. (1996) Cloning and functional analysis of the β-carotene hydroxylase of Arabidopsis thaliana. J. Biol. Chem. 271, 24349-24352
34. Gao, S., Lin, J., Liu, X., Deng, Z., Li, Y., Sun, X. and Tang, K. (2006) Molecular cloning, characterization and functional analysis of a 2C-methyl-D-erythritol 2, 4-cyclodiphosphate synthase gene from Ginkgo biloba. J. Biochem. Mol. Biol. 39, 502-510