A method of in situ screening for bacteria capable of producing alginate-degrading enzyme from aquatic fields

Journal of Food, Agriculture and Environment

Volumn 7, Issue 2, 2009, Pages 731-735

  Ueno, Ryohei ^a,b  

^a TOKYO UNIVERSITY OF MARINE SCIENCE AND TECHNOLOGY   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

Alginate lyase; Aquatic environments; Bacteria; In situ screening

Indexed keywords

AGAR; ALGINIC ACID; LYASE; RNA 16S; SEA WATER;

AQUATIC ENVIRONMENT; ARTICLE; BACTERIAL COUNT; BACTERIAL STRAIN; BACTERIUM COLONY; BACTERIUM DETECTION; BACTERIUM ISOLATION; CARBON SOURCE; ENZYME ACTIVITY; GEL; NONHUMAN; RNA SEQUENCE; TECHNIQUE; TUBE;

ALGAE; ANIMALIA; BACTERIA (MICROORGANISMS); CELLULOPHAGA FUCICOLA;

EID: 66349094843     PISSN: 14590255     EISSN: 14590263     Source Type: Journal    
DOI: None     Document Type: Article

References (15)

1. Doubet, R. S. and Quatrano, R. S. 1982. Isolation of marine bacteria capable of producing specific lyases for alginate degradation. Appl. Environ. Microbiol. 44:754-756.
2. Hansen, J. B., Doubet, R. S. and RAM, J. 1984. Alginate enzyme production by Bacillus circulans. Appl. Environ. Microbiol. 47:704-709.
3. Johansen, J. E., Nielsen, P. and Sjöholm, C. 1999. Description of Cellulophaga baltica gen. nov., sp. nov. and Cellulophaga fucicola gen. nov., sp. nov. and reclassification of Cytophaga lytica to Cellulophaga lytica gen. nov., comb. nov. Int. J. Syst. Bacteriol. 49:1231-1240.
4. Kitamikado, M., Tseng, C-H., Aoki, T., Yamaguchi, K. and Araki, T. 1989. Isolation of bacteria capable of producing alginate-degrading enzyme from natural environment. Nippon Suisan Gakk. 55:709-713.
5. Pérez Camacho, A., Salinas, J. M. and Delgado, M. 2004. Preparation of single cell detritus from Laminaria saccharina as a hatchery diet for bivalve mollusks. Mar. Biotechnol. 6:642-649.
6. Pérez Camacho, A., Salinas, J. M., Delgado, M. and Fuertes, C. 2007. Use of single cell detritus (SCD) produced from Laminaria saccharina in the feeding of the clam Ruditapes decussatus (Linnaeus, 1758). Aquaculture 266:211-218.
7. Sawabe, T., Oda, Y., Shiomi, Y. and Ezura, Y. 1995. Alginate degrading bacteria isolated from the gut of sea urchins and abalones. Microb. Ecol. 30:193-202.
8. Sutherland, I. W. 1977. Enzymes acting on bacterial surface carbohydrates. In Sutherland, I. (ed.). Surface Carbohydrates of the Prokaryotic Cell. Academic Press, London, pp. 209-245.
9. Sutherland, I. W. and Keen, G. A. 1981. Alginases from Beneckea pelagia and Pseudomonas spp. J. Appl. Biochem. 3:48-57.
10. Tanaka, R., Sugimura, I., Sawabe, T., Yoshimizu, M. and Ezura, Y. 2003. Gut microflora of abalone Haliotis discus hannai in culture changes coincident with a change in diet. Fish. Sci. 69:951-958.
11. von Riesen, V. L. 1980. Digestion of algin by Pseudomonas maltophilia and Pseudomonas putida. Appl. Environ. Microbiol. 39:92-96.
12. Linker, A. 1966. Bacterial mucopolysaccharidases (mucopolysaccharide lyases). Methods Enzymol. 6:650-654.
13. Xing, S. and Aharon, G. 1988. A method for RNA isolation from marine macro-algae. Anal. Biochem. 174:650-657.
14. Kim, C. S., Lee, C. H., Shin, J. S., Chung, Y. S. and Hyung, N. I. 1997. A simple and rapid method for isolation of high quality genomic DNA from fruit trees and conifers using PVP. Nucleic Acids Res. 25:1085-1086. (Pubitemid 27298283)
15. Nakagawa, A., Ozaki, T., Chubachi, K., Hosoyama, T., Okubo, T., Iyobe, S. and Suzuki, T. 1998. An effective method for isolating alginate lyase-producing Bacillus sp. ATB-1015 strain and purification and characterization of the lyase. J. Appl. Microbiol. 84:328-335.