메뉴 건너뛰기




Volumn 25, Issue 12, 2009, Pages 1543-1549

Application and evaluation of automated semantic annotation of gene expression experiments

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTOMATION; COMPUTER LANGUAGE; COMPUTER PROGRAM; CONTROLLED STUDY; DATA EXTRACTION; GENE EXPRESSION; GENE EXPRESSION PROFILING; HIGH THROUGHPUT SCREENING; MICROARRAY ANALYSIS; NATURAL LANGUAGE PROCESSING; ONLINE SYSTEM; PRIORITY JOURNAL; SEMANTIC DIFFERENTIAL METHOD;

EID: 66349089182     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp259     Document Type: Article
Times cited : (9)

References (27)
  • 1
    • 0035752429 scopus 로고    scopus 로고
    • Effective mapping of biomedical text to the UMLS Metathesaurus: The MetaMap program
    • Aronson,A.R. (2001) Effective mapping of biomedical text to the UMLS Metathesaurus: The MetaMap program. In Proceedings of the AMIA Annual Symposium. pp. 17-21.
    • (2001) Proceedings of the AMIA Annual Symposium , pp. 17-21
    • Aronson, A.R.1
  • 3
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner,M. et al. (2000) Gene Ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet , vol.25 , pp. 25-29
    • Ashburner, M.1
  • 4
    • 33846064113 scopus 로고    scopus 로고
    • NCBI GEO: Mining tens of millions of expression profiles-database and tools update
    • Barrett,T. et al. (2007) NCBI GEO: Mining tens of millions of expression profiles-database and tools update. Nucleic Acids Res., 35, D760-D765.
    • (2007) Nucleic Acids Res , vol.35
    • Barrett, T.1
  • 5
    • 33947225199 scopus 로고    scopus 로고
    • A review of ontology based query expansion
    • Bhogal,J. et al. (2007) A review of ontology based query expansion. Inform. Process. Manag., 43, 866-886.
    • (2007) Inform. Process. Manag , vol.43 , pp. 866-886
    • Bhogal, J.1
  • 6
    • 0345863927 scopus 로고    scopus 로고
    • The Unified Medical Language System (UMLS): Integrating biomedical terminology
    • Bodenreider,O. (2004) The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res., 32, D267-D270.
    • (2004) Nucleic Acids Res , vol.32
    • Bodenreider, O.1
  • 7
    • 58549105074 scopus 로고    scopus 로고
    • The NIFSTD and BIRNLex vocabularies: Building comprehensive ontologies for neuroscience
    • Bug,W.J. et al. (2008) The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. Neuroinformatics 6, 175-194.
    • (2008) Neuroinformatics , vol.6 , pp. 175-194
    • Bug, W.J.1
  • 8
    • 30544439504 scopus 로고    scopus 로고
    • Creation and implications of a phenome-genome network
    • Butte,A.J. and Kohane,I.S. (2006) Creation and implications of a phenome-genome network. Nat. Biotechnol., 24, 55-62.
    • (2006) Nat. Biotechnol , vol.24 , pp. 55-62
    • Butte, A.J.1    Kohane, I.S.2
  • 10
    • 44649165797 scopus 로고    scopus 로고
    • Assessment of disease named entity recognition on a corpus of annotated sentences
    • Jimeno,A. et al. (2008) Assessment of disease named entity recognition on a corpus of annotated sentences. BMC Bioinformatics 9 (Suppl. 3), S3.
    • (2008) BMC Bioinformatics , vol.9 , Issue.SUPPL. 3
    • Jimeno, A.1
  • 11
    • 0042357566 scopus 로고    scopus 로고
    • Help will be provided for this task: ontology-based annotator web service, last accesses date on April 27
    • Jonquet,C. et al. (2008) Help will be provided for this task: ontology-based annotator web service. Technical Report. (last accesses date on April 27, 2009).
    • (2008) Technical Report
    • Jonquet, C.1
  • 12
    • 0038817774 scopus 로고    scopus 로고
    • eVOC: A controlled vocabulary for unifying gene expression data
    • Kelso,J. et al. (2003) eVOC: A controlled vocabulary for unifying gene expression data. Genome Res., 13, 1222-1230.
    • (2003) Genome Res , vol.13 , pp. 1222-1230
    • Kelso, J.1
  • 13
    • 51049084462 scopus 로고    scopus 로고
    • Evaluation of text-mining systems for biology: Overview of the Second BioCreative community challenge
    • Krallinger,M. et al. (2008) Evaluation of text-mining systems for biology: Overview of the Second BioCreative community challenge. Genome Biol., 9 (Suppl. 2), S1.
    • (2008) Genome Biol , vol.9 , Issue.SUPPL. 2
    • Krallinger, M.1
  • 14
    • 33646137384 scopus 로고    scopus 로고
    • A systematic comparison and evaluation of biclustering methods for gene expression data
    • Prelic,A. et al. (2006) A systematic comparison and evaluation of biclustering methods for gene expression data. Bioinformatics, 22, 1122-1129.
    • (2006) Bioinformatics , vol.22 , pp. 1122-1129
    • Prelic, A.1
  • 15
    • 38349118307 scopus 로고    scopus 로고
    • Text processing through web services: Calling whatizit
    • Rebholz-Schuhmann,D. et al. (2008) Text processing through web services: Calling whatizit. Bioinformatics, 24, 296-298.
    • (2008) Bioinformatics , vol.24 , pp. 296-298
    • Rebholz-Schuhmann, D.1
  • 16
    • 0842283371 scopus 로고    scopus 로고
    • A reference ontology for biomedical informatics: The Foundational Model of Anatomy
    • Rosse,C. and Mejino,J.L. Jr (2003) A reference ontology for biomedical informatics: The Foundational Model of Anatomy. J. Biomed. Inform. 36, 478-500.
    • (2003) J. Biomed. Inform , vol.36 , pp. 478-500
    • Rosse, C.1    Mejino Jr, J.L.2
  • 17
    • 38049144316 scopus 로고    scopus 로고
    • Biomedical ontologies: A functional perspective
    • Rubin,D.L. et al. (2008) Biomedical ontologies: A functional perspective. Brief. Bioinformatics, 9, 75-90.
    • (2008) Brief. Bioinformatics , vol.9 , pp. 75-90
    • Rubin, D.L.1
  • 18
    • 34249860439 scopus 로고    scopus 로고
    • Advancing translational research with the semantic web
    • Ruttenberg,A. et al. (2007) Advancing translational research with the semantic web. BMC Bioinformatics, 8 (Suppl. 3), S2.
    • (2007) BMC Bioinformatics , vol.8 , Issue.SUPPL. 3
    • Ruttenberg, A.1
  • 19
    • 34648819801 scopus 로고    scopus 로고
    • Annotation and query of tissue microarray data using the NCI Thesaurus
    • Shah,N.H. et al. (2007) Annotation and query of tissue microarray data using the NCI Thesaurus. BMC Bioinformatics, 8, 296.
    • (2007) BMC Bioinformatics , vol.8 , pp. 296
    • Shah, N.H.1
  • 20
    • 33751431796 scopus 로고    scopus 로고
    • NCI Thesaurus: A semantic model integrating cancer-related clinical and molecular information
    • Sioutos,N. et al. (2007) NCI Thesaurus: A semantic model integrating cancer-related clinical and molecular information. J. Biomed. Inform., 40, 30-43.
    • (2007) J. Biomed. Inform , vol.40 , pp. 30-43
    • Sioutos, N.1
  • 21
    • 35948989284 scopus 로고    scopus 로고
    • The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration
    • Smith,B. et al. (2007) The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration. Nat. Biotechnol. 25, 1251-1255.
    • (2007) Nat. Biotechnol , vol.25 , pp. 1251-1255
    • Smith, B.1
  • 22
    • 5044241106 scopus 로고    scopus 로고
    • MedPost: A part-of-speech tagger for bioMedical text
    • Smith,L. et al. (2004) MedPost: A part-of-speech tagger for bioMedical text. Bioinformatics, 20, 2320-2321.
    • (2004) Bioinformatics , vol.20 , pp. 2320-2321
    • Smith, L.1
  • 23
    • 27744487007 scopus 로고    scopus 로고
    • Text mining and ontologies in biomedicine: Making sense of raw text
    • Spasic,I. et al. (2005) Text mining and ontologies in biomedicine: making sense of raw text. Brief. Bioinform., 6, 239-251.
    • (2005) Brief. Bioinform , vol.6 , pp. 239-251
    • Spasic, I.1
  • 25
    • 0035162272 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • Wheeler,D.L. et al. (2001) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 29 11-16.
    • (2001) Nucleic Acids Res , vol.29 , pp. 11-16
    • Wheeler, D.L.1
  • 26
    • 33645277092 scopus 로고    scopus 로고
    • The MGED Ontology: A resource for semantics-based description of microarray experiments
    • Whetzel,P.L. et al. (2006) The MGED Ontology: A resource for semantics-based description of microarray experiments. Bioinformatics 22, 866-873.
    • (2006) Bioinformatics , vol.22 , pp. 866-873
    • Whetzel, P.L.1
  • 27
    • 33748046130 scopus 로고    scopus 로고
    • Extracting principal diagnosis, co-morbidity and smoking status for asthma research: Evaluation of a natural language processing system
    • Zeng,Q.T. et al. (2006) Extracting principal diagnosis, co-morbidity and smoking status for asthma research: Evaluation of a natural language processing system. BMC Med. Inform. Decis. Mak., 6, 30.
    • (2006) BMC Med. Inform. Decis. Mak , vol.6 , pp. 30
    • Zeng, Q.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.