Genetic Diversity and Fitness of Fusarium graminearum Populations from Rice in Korea

Applied and Environmental Microbiology

Volumn 75, Issue 10, 2009, Pages 3289-3295

  Lee, Jungkwan ^a   Chang, In Young ^a   Kim, Hun ^a   Yun, Sung Hwan ^b   Leslie, John F ^c   Lee, Yin Won ^a  

^a Seoul National University   (South Korea)

^b Soonchunhyung University   (South Korea)

^c KANSAS STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AGRO ECOSYSTEMS; AMPLIFIED FRAGMENT LENGTH POLYMORPHISMS; CEREAL CROP; DEOXYNIVALENOL; F. GRAMINEARUM; FUNGAL PATHOGEN; FUSARIUM GRAMINEARUM; GENETIC DIVERSITY; GENETIC IDENTITY; GENOTYPING; HAPLOTYPES; NIVALENOL; REPUBLIC OF KOREA; RICE GRAINS; RICE PLANTS; RICE STRAWS; TRICHOTHECENES;

CHEMICAL ANALYSIS; STRAIN;

GRAIN (AGRICULTURAL PRODUCT);

NIVALENOL; TRICHOTHECENE; VOMITOXIN;

ADAPTATION; AGRICULTURAL ECOSYSTEM; FITNESS; FUNGUS; GENETIC ANALYSIS; GENOTYPE; HOST PREFERENCE; INOCULATION; PHYLOGENETICS; POLYMORPHISM; RICE;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; ASCOSPORE; CONIDIUM; CONTROLLED STUDY; FUNGAL COMMUNITY; FUNGAL MORPHOLOGY; FUNGAL STRAIN; FUSARIUM GRAMINEARUM; GENE FREQUENCY; GENE ISOLATION; GENE STRUCTURE; GENETIC IDENTIFICATION; GENETIC LINE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENOTYPE; GRAIN; HAPLOTYPE; INOCULATION; KOREA; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PLANT; POLYMERASE CHAIN REACTION; RICE; SPIKELET; STRAW;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA, FUNGAL; FUSARIUM; GENETIC VARIATION; GENOTYPE; KOREA; MYCOTOXINS; ORYZA SATIVA; TRICHOTHECENES;

GIBBERELLA ZEAE;

EID: 66249123943     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02287-08     Document Type: Article

References (49)

1. Bowden, R. L., and J. F. Leslie. 1999. Sexual recombination in Gibberella zeae. Phytopathology 89:182-188.
2. Bowden, R. L., J. F. Leslie, J. Lee, and Y.-W. Lee. 2006. Cross fertility of lineages in Fusarium graminearum (Gibberella zeae), p. 54-60. In T. Ban, J. M. Lewis, and E. E. Phipps (ed.), The Global Fusarium Initiative for International Collaboration: a strategic planning workshop. CIMMYT, El Batan, Mexico.
3. Carter, J. P., H. N. Rezanoor, D. Holden, A. E. Desjardins, R. D. Plattner, and P. Nicholson. 2002. Variation in pathogenicity associated with the genetic diversity of Fusarium graminearum. Eur. J. Plant Pathol. 108:573-583.
4. Cattaneo, A. 1877. Contributo allo studio dei miceti che nascono sulle pianticelle di riso. Arch. Lab. Botan. Critt. Univ. Pavia 2-3:117-128.
5. Chun, J. H.1963. Epidemiologicalsurveyofhumanmycotoxicosiscaused by scabby cereals, p. 385-507. In Ministry of Agriculture and Forestry, Republic of Korea (ed.), Research report on wheat and barley scab. Ministry of Agriculture and Forestry, Seoul, Republic of Korea. (In Korean.)
6. Chung, H.-S. 1975. Cerealscabmycotoxicosis inKoreaandpresentstatus of mycotoxin research. Korean J. Mycol. 3:31-36.
7. Chung, H. W., H. S. Chung, and B. J. Chung. 1964. Studies onpathogenicity of wheat scab fungus (Gibberella zeae) to various crop seedlings. J. Plant Prot. 3:21-25.
8. Cumagun, C. J. R., R. L. Bowden, J. E. Jurgenson, J. F. Leslie, and T. Miedaner. 2004. Genetic mapping of pathogenicity and aggressiveness of Gibberella zeae (Fusarium graminearum) toward wheat. Phytopathology 94: 520-526.
9. Desjardins, A. E. 2006. Fusarium mycotoxins: chemistry, genetics, and biology. APS Press, St. Paul, MN.
10. Desjardins, A. E., M. Busman, G. Manandhar, A. M. Jarosz, H. K. Man- andhar, and R. H. Proctor. 2008. Gibberetta ear rot of maize (Zea mays)in Nepal: distribution of the mycotoxins nivalenol and deoxynivalenol in naturally and experimentally infected maize. J. Agric. Food Chem. 56:5428-5436.
11. Desjardins, A. E., H. K. Manhanadhar, R. D. Plattner, G. G. Manandhar, S. M. Poling, and C. M. Maragos. 2000. Fusarium species from Nepalese rice and production of mycotoxins and gibberellic acid by selected species. Appl. Environ. Microbiol. 66:1020-1025.
12. Gale, L. R., L. F. Chen, C. A. Hernick, K. Takamura, and H. C. Kistler. 2002. Population analysis of Fusarium graminearum from wheat fields in eastern China. Phytopathology 92:1315-1322.
13. Gale, L. R., T. J. Ward, V. Balmas, and H. C. Kistler. 2007. Population subdivision of Fusarium graminearum sensu stricto in the Upper Midwestern United States. Phytopathology 97:1434-1439.
14. Goswami, R. S., and H. C. Kistler. 2005. Pathogenicity and in planta mycotoxin accumulation among members of the Fusarium graminearum species complex on wheat and rice. Phytopathology 95:1397-1404.
15. Ichinoe, M., H. Kurata, Y. Sugiura, and Y. Ueno. 1993. Chemotaxonomy of Gibberella zeae with special reference to production of trichothecenes and zearalenone. Appl. Environ. Microbiol. 46:1346-1369.
16. Jurgenson, J. E., R. L. Bowden, K. A. Zeller, J. F. Leslie, N. J. Alexander, and R. D. Plattner. 2002. A genetic map of Gibberella zeae (Fusarium graminearum). Genetics 160:1451-1460.
17. Kim, J.-C., H.-J. Kang, D.-H. Lee, Y.-W. Lee, and T. Yoshizawa. 1993. Natural occurrence of Fusarium mycotoxins (trichothecenes and zearalenone) in barley and maize in Korea. Appl. Environ. Microbiol. 59:3798-3802.
18. Lee, J., J. E. Jurgenson, J. F. Leslie, and R. L. Bowden. 2008. Alignment of genetic and physical maps of Gibberella zeae. Appl. Environ. Microbiol. 74:2349-2359.
19. Lee, J., T. Lee, Y.-W. Lee, S.-H. Yun, and B. G. Turgeon. 2003. Shifting fungal reproductive mode by manipulation of mating type genes: obligatory heterothallism of Gibberella zeae. Mol. Microbiol. 50:145-152.
20. Lee, T., Y.-K. Han, K.-H. Kim, S.-H. Yun, and Y.-W. Lee. 2002. Tri13 and Tri7 determine deoxynivalenol- and nivalenol-producing chemotypes of Gibberella zeae. Appl. Environ. Microbiol. 68:2148-2154.
21. Lee, T., D.-W. Oh, H.-S. Kim, J. Lee, Y.-H. Kim, S.-H. Yun, and Y.-W. Lee. 2001. Identification of deoxynivalenol- and nivalenol-producing chemotypes of Gibberella zeae by using PCR. Appl. Environ. Microbiol. 67:2966-2972.
22. Lee, Y.-W., J. J. Jeon, H. Kim, I. Y. Jang, H.-S. Kim, S.-H. Yun, and J.-G. Kim. 2004. Lineage composition and trichothecenes production of Gibberella zeae population in Korea, p.117-122. In T. Yoshizawa (ed.), New horizons of mycotoxicology for assuring food safety. Japanese Association of Mycotoxi- cology, Kagawa, Japan.
23. Leslie, J. F., and B. A. Summerell. 2006. The Fusarium laboratory manual. Blackwell Professional, Ames, IA.
24. Leslie, J. F., and K. K. Klein. 1996. Female fertility and mating-type effects on effective population size and evolution in filamentous fungi. Genetics 144:557-567.
25. Leslie, J. F., and R. L. Bowden. 2008. Fusarium graminearum: when species concepts collide. Cereal Res. Commun. 36(Suppl. B):609-615.
26. McDermott, J. M., and B. A. McDonald. 1993. Gene flow in plant pathosys- tems. Annu. Rev. Phytopathol. 31:353-373.
27. Milgroom, M. G. 1996. Recombination and themultilocus structure offungal populations. Annu. Rev. Phytopathol. 43:457-477.
28. Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA 70:3321-3323.
29. Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590.
30. O'Donnell, K., H. C. Kistler, B. K. Tacke, and H. H. Casper. 2000. Gene genealogies reveal global phylogeographic structure and reproductive isolation among lineages of Fusarium graminearum, the fungus causing wheat scab. Proc. Natl. Acad. Sci. USA 97:7905-7910.
31. Ou, S. H. 1985. Rice diseases. Commonwealth Mycological Institute, Kew, United Kingdom.
32. Parry, D. W., P. Jenkinson, and L. McLeod. 1995. Fusariumear blight (scab) in small grains-a review. Plant Pathol. 44:207-238.
33. Qu, B., H. P. Li, J. B. Zhang, T. Huang, J. Carter, Y. C. Liao, and P. Nicholson. 2008. Comparison of genetic diversity and pathogenicity of Fusarium head blight pathogens from china and Europe by SSCP and seedling assays on wheat. Plant Pathol. 57:642-651.
34. Ramirez, M. L., M. M. Reynoso, M. C. Farnochi, A. M. Torres, J. F. Leslie, and S. N. Chulze. 2007. Population genetic structure of Gibberella zeae isolated from wheat in Argentina. Food Addit. Contam. 24:1115-1120.
35. Sohn, H. B., J.-A. Seo, and Y.-W. Lee. 1999. Co-occurrence of Fusarium mycotoxins in mouldy and healthy corn from Korea. Food Addit. Contam. 16:153-158.
36. Starkey, D. E., T. J. Ward, T. Aoki, L. R. Gale, H. C. Kistler, D. M. Geiser, H. Suga, B. Toth, J. Varga, and K. O'Donnell. 2007. Global molecular surveillance reveals novel Fusarium head blight species and trichothecene toxin diversity. Fungal Genet. Biol. 44:1191-1204.
37. Suga, H., G. W. Karugia, T. Ward, L. R. Gale, K. Tomimura, T. Nakajima, A. Miyasaka, S. Koizumi, K. Kageyama, and M. Hyakumachi. 2008. Molecular characterization of the Fusarium graminearum species complexin Japan. Phytopathology 98:159-166.
38. Sutton, J. C. 1982. Epidemiology of wheat head blight and maize ear rot caused by Fusarium graminearum. Can. J. Plant Pathol. 4:195-209.
39. Swofford, D. L. 1999. PAUP*. Phylogenetic analysis using parsimony (*and other methods), version 4.0*. Sinauer Associates, Sunderland, MA.
40. Tanaka, T., A. Hasegawa, Y. Matsuki, K. Ishii, and Y. Ueno. 1985. Improved methodology for the simultaneous detection of the Fusarium mycotoxins deoxynivalenol and nivalenol in cereals. Food Addit. Contam. 2:125-137.
41. Thongrussamee, T., N. S. Kuzmina, W.-B. Shim, T. Jiratpong, S. A. Eremin, J. Intrasook, and D.-H. Chung. 2008. Monoclonal-based enzyme-linked immunosorbent assay for the detection of zearalenone in cereals. Food Addit. Contam. 25:997-1006.
42. Toth, B., A. Mesterházy, Z. Horvath, T. Bartók, M. Varga, and J. Varga. 2005. Genetic variability of central European isolates of the Fusarium graminearum species complex. Eur. J. Plant Pathol. 113:35-45.
43. Urakami, T., C. Ito-Yoshida, H. Araki, T. Kijima, K. Suzuki, and K. Komagata. 1994. Transfer of Pseudomonas plantarii and Pseudomonas glumae to Burkholderia as Burkholderia spp. and description of Burkholderia vandii sp. nov. Int. J. Syst. Bacteriol. 44:235-245.
44. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van der Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau. 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res. 23:4407-4414.
45. Ward, T. J., J. P. Bielawski, H. C. Kistler, E. Sullivan, and K. O'Donnell. 2002. Ancestral polymorphism and adaptive evolution in the trichothecene mycotoxin gene cluster of phytopathogenic Fusarium. Proc. Natl. Acad. Sci. USA 99:9278-9283.
46. Ward, T. J., R. M. Clear, A. P. Rooney, K. O'Donnell, D. Gaba, S. Patrick, D. E. Starkey, J. Gibert, D. M. Geiser, and T. W. Nowicki. 2008. An adaptive evolutionary shift in Fusarium head blight pathogen populations is driving the rapid spread of more toxigenic Fusarium graminearum in North America. Fungal Genet. Biol. 45:473-484.
47. ©-based freeware for population genetic analysis, version 1.32. University of Alberta and Center for International Forestry Research, Ottawa, Canada. http://www.ualberta.ca/-fyeh.
48. Zeller, K. A., R. L. Bowden, and J. F. Leslie. 2003. Diversity of epidemic populations of Gibberella zeae from small quadrats in Kansas and North Dakota. Phytopathology 93:874-880.
49. Zeller, K. A., R. L. Bowden, and J. F. Leslie. 2004. Population differentiation and recombination in wheat scab populations of Gibberella zeae from the United States. Mol. Ecol. 13:563-571.