Biomarker discovery and transcriptomic responses in Daphnia magna exposed to munitions constituents

Environmental Science and Technology

Volumn 43, Issue 11, 2009, Pages 4188-4193

  Garcia Reyero, Natalia ^a   Poynton, Helen C ^b,e   Kennedy, Alan J ^c   Guan, Xin ^d   Escalon, B Lynn ^d   Chang, Bonnie ^b   Varshavsky, Julia ^b   Loguinov, Alex V ^b   Vulpe, Chris D ^b   Perkins, Edward J ^c  

^a JACKSON STATE UNIVERSITY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c US ARMY ENGINEER RESEARCH AND DEVELOPMENT CENTER   (United States)

^d SpecPro   (United States)

^e U S ENVIRONMENTAL PROTECTION AGENCY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALTERNATIVE METHODS; BIO-MARKER DISCOVERY; CDNA MICROARRAYS; CHEMICAL EXPOSURE; DAPHNIA MAGNA; END POINTS; ENVIRONMENTAL MONITORING; GENE EXPRESSION ANALYSIS; MICROARRAY ANALYSIS; MUNITIONS CONSTITUENTS; QUANTITATIVE REVERSE TRANSCRIPTION-POLYMERASE CHAIN REACTION; SIX GENES;

AMMUNITION; BIOACTIVITY; BIOMARKERS; ENVIRONMENTAL ENGINEERING; LEAD; TRANSCRIPTION; ZINC;

CHEMICAL ANALYSIS;

BIOLOGICAL MARKER; COMPLEMENTARY DNA; COPPER; LEAD; TRANSCRIPTOME; ZINC;

BIOMARKER; CRUSTACEAN; ECOTOXICOLOGY; ENVIRONMENTAL MONITORING; GENE EXPRESSION; POLLUTION EXPOSURE; POLLUTION MONITORING; POLYMERASE CHAIN REACTION;

ARTICLE; DAPHNIA; DNA MICROARRAY; ENVIRONMENTAL EXPOSURE; GENE EXPRESSION; MICROARRAY ANALYSIS; NONHUMAN; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ANIMALS; BIOLOGICAL MARKERS; DAPHNIA; GENE EXPRESSION REGULATION; METALS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; WATER POLLUTANTS, CHEMICAL; WEAPONS;

DAPHNIA MAGNA;

EID: 66249115988     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es803702a     Document Type: Article

References (43)

1. Talmage, S. S.; Opresko, D. M.; Maxwell, C. J.; Welsh, C. J.; Cretella, F. M.; Reno, P. H.; Daniel, F. B. Nitroaromatic munition compounds: Environmental effects and screening values. Rev. Environ. Contam. Toxicol. 1999, 161, 1-156.
2. Koutsospyros, A.; Braida, W.; Christodoulatos, C.; Dermatas, D.; Strigul, N. A review of tungsten: From environmental obscurity to scrutiny. J. Hazard Mater. 2006, 136 (1), 1-19. (Pubitemid 44183616)
3. Simini, M.; Wentsel, R. S.; Checkai, R. T.; Phillips, C. T.; Chester, N. A.; Major, M. A.; Amos, J. C. Evaluation of soil toxicity at Joliet Army Ammunition Plant. Environ. Toxicol. Chem. 1995, 14, 623-630.
4. Jenkins, T. F.; Hewitt, A. D.; Grant, C. L.; Thiboutot, S.; Ampleman, G.; Walsh, M. E.; Ranney, T. A.; Ramsey, C. A.; Palazzo, A. J.; Pennington, J. C. Identity and distribution of residues of energetic compounds at army live-fire training ranges. Chemosphere 2006, 63 (8), 1280-1290.
5. Juhasz, A. L.; Naidu, R. Explosives: Fate, dynamics, and ecological impact in terrestrial and marine environments. Rev. Environ. Contam. Toxicol. 2007, 191, 163-215.
6. Kuperman, R. G.; Simini, M.; Siciliano, S.; Gong, P. Effects of Energetic Materials on Soil Organisms, In Ecotoxicology of Explosives; Sunahara, G. I., Hawari, J., Lotufo, G., Kuperman, R. G., Eds., CRC Press: Boca Raton, FL, 2008.
7. Richter-Torres, P.; Dorsey, A.; Hodes, C. S. Toxicological Profile for 2,4,6-Trinitrotoluene, Agency for Toxic Substances and Disease Registry: Atlanta, GA, 1995.
8. Cenas, N.; Nemeikaite-Ceniene, A.; Sergediene, E.; Nivinskas, H.; Anusevicius, Z.; Sarlauskas, J. Quantitative structure-activity relationships in enzymatic single-electron reduction of nitroaromatic explosives: Implications for their cytotoxicity. Biochim. Biophys. Acta 2001, 1528 (1), 31-38. (Pubitemid 32763147)
9. Nemeikaite-Ceniene, A.; Sarlauskas, J.; Miseviciene, L.; Anusevicius, Z.; Maroziene, A.; Cenas, N. Enzymatic redox reactions of the explosive 4,6-dinitrobenzofuroxan (DNBF): Implications for its toxic action. Acta. Biochim. Pol. 2004, 51 (4), 1081-1086. (Pubitemid 40187580)
10. Woody, R. C.; Kearns, G. L.; Brewster, M. A.; Turley, C. P.; Sharp, G. B.; Lake, R. S. The neurotoxicity of cyclotrimethylenetrinitramine (RDX) in a child: A clinical and pharmacokinetic evaluation. J. Toxicol. Clin. Toxicol. 1986, 24 (4), 305-319. (Pubitemid 17174806)
11. Goldberg, D. J.; Green, S. T.; Nathwani, D.; McMenamin, J.; Hamlet, N.; Kennedy, D. H. RDX intoxication causing seizures and awidespread petechial rash mimicking meningococcaemia. J. R. Soc. Med. 1992, 85 (3), 181.
12. Harrel-Bruder, B.; Hutchins, K. L. Seizures caused by ingestion of composition C-4. Ann. Emerg. Med. 1995, 26, 746-748.
13. Wintz, H.; Yoo, J. L.; Loguinov, A.; Wu, Y. Y.; Steevens, J. A.; Holland, R. D.; Beger, R. D.; Perkins, E. J.; Hughes, O.; Vulpe, C. D. Gene expression profiles in fathead minnows exposed to 2,4-DNT: Correlation with toxicity in mammals. Toxicol. Sci. 2006, 94, 71-82. (Pubitemid 44542331)
14. Forbes, V. E.; Palmqvist, A.; Bach, L. The use and misuse of biomarkers in ecotoxicology. Environ. Toxicol. Chem. 2006, 25 (1), 272-280. (Pubitemid 43031228)
15. Denslow, N. D.; Garcia-Reyero, N.; Barber, D. S. Fish 'n' chips: The use of microarrays for aquatic toxicology. Mol. Biosyst. 2007, 3 (3), 172-177. (Pubitemid 46293323)
16. Ankley, G. T.; Daston, G. P.; Degitz, S. J.; Denslow, N. D.; Hoke, R. A.; Kennedy, S. W.; Miracle, A. L.; Perkins, E. J.; Snape, J.; Tillitt, D. E.; Tyler, C. R.; Versteeg, D. Toxicogenomics in regulatory ecotoxicology. Environ. Sci. Technol. 2006, 40 (13), 4055-4065. (Pubitemid 44164241)
17. Poynton, H. C.; Varshavsky, J. R.; Chang, B.; Cavigiolio, G.; Chan, S.; Holman, P. S.; Loguinov, A. V.; Bauer, D. J.; Komachi, K.; Theil, J. E.; Perkins, E. J.; Hughes, O.; Vulpe, C. D. Daphnia magna ecotoxicogenomics provides mechanistic insights into metal toxicity. Environ. Sci. Technol. 2007, 41 (3), 1044-1050. (Pubitemid 46208549)
18. Poynton, H. C.; Varshavsky, J. R.; Chan, S.; Loguinov, A. V.; Perkins, E. J.; Vulpe, C. D. Gene expression profiling in Daphnia magna. Part I: Concentration-dependent gene expression profiles provide support for the no observed transcriptional effect level in Daphnia magna. Environ. Sci. Technol. 2008, 42 (16), 6250-6256.
19. Poynton, H. C.; Zuzow, R.; Loguinov, A. V.; Perkins, E. J.; Vulpe, C. D. Gene expression profiling in Daphnia magna. Part II: Validation of a copper specific gene expression signature with effluent from two copper mines in California. Environ. Sci. Technol. 2008, 42 (16), 6257-6263.
20. Methods for Measuring the Acute Toxicity of Effluents and Receiving Waters to Freshwater and Marine Organisms; EPA/812/R/02/012; U.S. Environmental Protection Agency, Office of Water: Washington, DC, 2002.
21. Lasier, P. J.; Winger, P. V.; Hardin, I. R. Effects of hardness and alkalinity in culture and test waters on reproduction of Ceriodaphnia dubia. Environ. Toxicol.Chem.2006, 25 (10), 2781-2786. (Pubitemid 44898445)
22. Cebrian, C.; Andreu-Moliner, E. S.; Fernandez-Casalderrey, A.; Ferrando, M. D. Acute toxicity and oxygen consumption in the gills of Procambarus clarkii in relation to chlorpyrifos exposure. Bull. Environ. Contam. Toxicol. 1992, 49 (1), 145-149.
23. Venkateswara Roa, J. Sublethal effects of an organophosphorus insecticide (RPR-II) on biochemical parameters of tilapia, Oreochromis mossambicus. Comp. Biochem. Physiol., Part C: Toxicol. Pharmacol. 2006, 143 (4), 492-498. (Pubitemid 44137297)
24. Ghosh, D.; Bhattacharya, S.; Mazumder, S. Perturbations in the catfish immune responses by arsenic: Organ and cell specific effects. Comp. Biochem. Physiol., Part C: Toxicol. Pharmacol. 2006, 143 (4), 455-463. (Pubitemid 44080694)
25. Cheung, V. G.; Morley, M.; Aguilar, F.; Massimi, A.; Kucherlapati, R.; Childs, G. Making and reading microarrays. Nat. Genet. 1999, 21 (Supplement 1), 15-19.
26. Loguinov, A. V.; Mian, I. S.; Vulpe, C. D. Exploratory differential gene expression analysis in microarray experiments with no or limited replication. Genome Biol. 2004, 5 (3), R18.
27. Rozen, S.; Skaletsky, H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 2000, 132, 365-386.
28. Miller, A. C.; Brooks, K.; Smith, J.; Page, N. Effect of the militarily relevant heavy metals, depleted uranium, and heavy metaltungsten alloy on gene expression in human liver carcinoma cells (HepG2). Mol. Cell. Biochem. 2004, 255 (1-2), 247-256. (Pubitemid 38159784)
29. Miller, A. C.; Mog, S.; McKinney, L.; Luo, L.; Allen, J.; Xu, J.; Page, N. Neoplastic transformation of human osteoblast cells to the tumorigenic phenotype by heavy metal-tungsten alloy particles: Induction of genotoxic effects. Carcinogenesis 2001, 22 (1), 115-125. (Pubitemid 32098152)
30. Mager, E. M.; Wintz, H.; Vulpe, C. D.; Brix, K. V.; Grosell, M. Toxicogenomics of water chemistry influence on chronic lead exposure to the fathead minnow (Pimephales promelas). Aquat. Toxicol. 2008, 87 (3), 200-209.
31. Goering, P. L. Lead-protein interactions as a basis for lead toxicity. Neurotoxicology 1993, 14 (2-3), 45-60. (Pubitemid 23292790)
32. Ha, M. H.; Choi, J. Effects of environmental contaminants on hemoglobin of larvae of aquatic midge, Chironomus riparius (Diptera, Chironomidae): A potential biomarker for ecotoxicity monitoring. Chemosphere 2008, 71 (10), 1928-1936.
33. Dave, G. Effects of copper on growth, reproduction, survival and haemoglobin in Daphnia magna. Comp. Biochem. Physiol. C 1984, 78, 439-443. (Pubitemid 14095942)
34. Berglind, R. The effects of cadmium on ALA-D activity, growth, and haemoglobin content in the water flea, Daphnia magna. Comp. Biochem. Physiol. C 1985, 80, 407-410. (Pubitemid 15098363)
35. Berglind, R.; Dave, G.; Sjöbeck, M. The effects of lead on δ-aminolevulinic acid dehydratase activity, growth, hemoglobin content, and reproduction in Daphnia magna. Ecotoxicol. Environ. Safe. 1985, 9, 216-229. (Pubitemid 15103005)
36. Merzendorfer, H.; Zimoch, L. Chitin metabolism in insects: Structure, function and regulation of chitin synthases and chitinases. J. Exp. Biol. 2003, 206 (Pt 24), 4393-4412. (Pubitemid 38051454)
37. Gong, P.; Guan, X.; Inouye, L. S.; Deng, Y.; Pirooznia, M.; Perkins, E. J. Transcriptomic analysis of RDX and TNT interactive sublethal effects in the earthworm Eisenia fetida. BMC Genomics 2008, 9 (Supplement 1), S15.
38. Zhang, B.; Cox, S. B.; McMurry, S. T.; Jackson, W. A.; Cobb, G. P.; Anderson, T. A. Effect of two major N-nitroso hexahydro-1,3,5-trinitro-1,3,5- triazine (RDX) metabolites on earthworm reproductive success. Environ. Pollut. 2008, 153 (3), 658-667.
39. Mukhi, S.; Pan, X.; Cobb, G. P.; Patino, R. Toxicity of hexahydro-1,3,5-trinitro-1,3,5-triazine to larval zebrafish (Danio rerio). Chemosphere 2005, 61 (2), 178-185. (Pubitemid 41317131)
40. Garcia-Reyero, N.; Denslow, N. Applications of genomics technologies to the study of organochlorine pesticide-induced reproductive toxicity in fish. J. Pestic. Sci. 2006, 31, 252-262. (Pubitemid 44285773)
41. Watanabe, H.; Takahashi, E.; Nakamure, Y.; Oda, S.; Tatarazako, N.; Iguchi, T. Development of a Daphnia magna DNA microarray for evaluating the toxicity of environmental chemicals. Environ. Toxicol. Chem. 2007, 26 (4), 669-676. (Pubitemid 46663267)
42. Hook, S. E.; Skillman, A. D.; Small, J. A.; Schultz, I. R. Gene expression patterns in rainbow trout, Oncorhynchus mykiss, exposed to a suite of model toxicants. Aquat. Toxicol. 2006, 77 (4), 372-385.
43. Svendsen, C.; Owen, J.; Kille, P.; Wren, J.; Jonker, M. J.; Headley, B. A.; Morgan, A. J.; Blaxter, M.; Sturzenbaum, S. R.; Hankard, P. K.; Lister, L. J.; Spurgeon, D. J. Comparative transcriptomic responses to chronic cadmium, fluoranthene, and atrazine exposure in Lumbricus rubellus. Environ. Sci. Technol. 2008, 42 (11), 4208-4214.