eCOMPAGT - Efficient Combination and Management of Phenotypes and Genotypes for Genetic Epidemiology

BMC Bioinformatics

Volumn 10, Issue , 2009, Pages

  Schönherr, Sebastian ^a,b   Weißensteiner, Hansi ^a,b   Coassin, Stefan ^b   Specht, Günther ^a   Kronenberg, Florian ^b   Brandstätter, Anita ^b  

^a UNIVERSITY OF INNSBRUCK   (Austria)

^b INNSBRUCK MEDICAL UNIVERSITY   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

DATA PRIVACY PROTECTIONS; EPIDEMIOLOGICAL STUDIES; FINANCIAL RESOURCES; GENETIC EPIDEMIOLOGIES; IMPORTANT FEATURES; LABORATORY INFORMATION MANAGEMENT SYSTEM; PERSONAL INFORMATION; STATISTICAL SOFTWARE;

DATA PRIVACY; DATABASE SYSTEMS; INFORMATION MANAGEMENT;

GENETIC PROGRAMMING;

ARTICLE; COMPUTER INTERFACE; CONTROLLED STUDY; ECOMPAGT; GENETIC DATABASE; GENETIC EPIDEMIOLOGY; GENETIC PRIVACY; GENOTYPE; INFORMATION PROCESSING; MEDICAL INFORMATION SYSTEM; PHENOTYPE; BIOLOGY; COMPUTER PROGRAM; DATA BASE; EPIDEMIOLOGY; METHODOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM; STANDARD;

COMPUTATIONAL BIOLOGY; DATABASE MANAGEMENT SYSTEMS; EPIDEMIOLOGY, MOLECULAR; GENOTYPE; PHENOTYPE; POLYMORPHISM, SINGLE NUCLEOTIDE; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 66149168699     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-10-139     Document Type: Article

References (23)

1. Xavier RJ Rioux JD Genome-wide association studies: A new window into immune-mediated diseases Nat Rev Immunol 2008, 8(8):631-643. 10.1038/ nri2361 18654571
2. Kronenberg F Genome-wide association studies in aging-related processes such as diabetes mellitus, atherosclerosis and cancer Exp Gerontol 2008, 43(1):39-43. 10.1016/j.exger.2007.09.005 17967522
3. McCarthy MI Abecasis GR Cardon LR Goldstein DB Little J Ioannidis JP Hirschhorn JN Genome-wide association studies for complex traits: consensus, uncertainty and challenges Nat Rev Genet 2008, 9(5):356-369. 10.1038/nrg2344 18398418
4. Ioannidis JP Common genetic variants for breast cancer: 32 largely refuted candidates and larger prospects J Natl Cancer Inst 2006, 98(19):1350-1353. 17018776
5. Lohmueller KE Pearce CL Pike M Lander ES Hirschhorn JN Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease Nat Genet 2003, 33(2):177-182. 10.1038/ng1071 12524541
6. Chanock SJ Manolio T Boehnke M Boerwinkle E Hunter DJ Thomas G Hirschhorn JN Abecasis G Altshuler D Bailey-Wilson JE et al Replicating genotype-phenotype associations Nature 2007, 447(7145):655-660. 10.1038/ 447655a 17554299
7. Fiddy S Cattermole D Xie D Duan XY Mott R An integrated system for genetic analysis BMC Bioinformatics 2006, 7:210. 1459210 16623936 10.1186/1471-2105-7-210
8. Java Excel API 2008 http://jexcelapi.sourceforge.net/
9. CSV Parser CSV Parser 2008 http://javacsv.sourceforge.net/
10. Java Swing 2008 http://java.sun.com/javase/6/docs/technotes/guides/swing/
11. Java SwingX 2008 https://swingx.dev.java.net/
12. Substance 2008 http://substance.dev.java.net/
13. Hibernate http://www.hibernate.org/
14. Java Development Kit http://java.sun.com/javase/6/docs/
15. Java Persistence API http://java.sun.com/javaee/technologies/ persistence.jsp
16. Bauer C King G Java Persistence with Hibernate Greenwich, UK, Manning Publications 2006
17. Java Database Connectivity 2008 http://java.sun.com/javase/technologies/ database/index.jsp
18. Orro A Guffanti G Salvi E Macciardi F Milanesi L SNPLims: A data management system for genome wide association studies BMC Bioinformatics 2008, 9(Suppl 2):S13. 2323662 18387201 10.1186/1471-2105-9-S2-S13
19. Zhao LJ Li MX Guo YF Xu FH Li JL Deng HW SNPP: Automating large-scale SNP genotype data management Bioinformatics 2005, 21(2):266-268. 10.1093/ bioinformatics/bth486 15377503
20. Donofrio N Rajagopalon R Brown D Diener S Windham D Nolin S Floyd A Mitchell T Galadima N Tucker S et al 'PACLIMS': A component LIM system for high-throughput functional genomic analysis BMC Bioinformatics 2005, 6:94. 1090558 15826298 10.1186/1471-2105-6-94
21. Monnier S Cox DG Albion T Canzian F T.I.M.S: TaqMan Information Management System, tools to organize data flow in a genotyping laboratory BMC Bioinformatics 2005, 6:246. 1266351 16221298 10.1186/ 1471-2105-6-246
22. Isaksson M Stenberg J Dahl F Thuresson AC Bondeson ML Nilsson M MLGA a rapid and cost-efficient assay for gene copy-number analysis Nucleic Acids Res 2007, 35(17):115. 10.1093/nar/gkm651
23. Redon R Ishikawa S Fitch KR Feuk L Perry GH Andrews TD Fiegler H Shapero MH Carson AR Chen W et al Global variation in copy number in the human genome Nature 2006, 444(7118):444-454. 2669898 17122850 10.1038/ nature05329