Genotyping of clinical varicella-zoster virus isolates collected in China

Journal of Clinical Microbiology

Volumn 47, Issue 5, 2009, Pages 1418-1423

  Liu, Jingjing ^a   Wang, Mingli ^a   Gan, Lin ^a   Yang, Sen ^a   Chen, Jason ^a,b  

^a ANHUI MEDICAL UNIVERSITY   (China)

^b Department of Medicine   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADOLESCENT; ADULT; AGED; ARTICLE; CHINA; CLINICAL ARTICLE; FEMALE; GENOTYPE; HERPES ZOSTER; HUMAN; MALE; OPEN READING FRAME; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SINGLE NUCLEOTIDE POLYMORPHISM; VARICELLA ZOSTER VIRUS; VIRUS STRAIN;

ADOLESCENT; ADULT; AGED; AGED, 80 AND OVER; BASE SEQUENCE; CHICKENPOX; CHINA; DNA FINGERPRINTING; DNA, VIRAL; FEMALE; GENOTYPE; HERPES ZOSTER; HERPESVIRUS 3, HUMAN; HUMANS; MALE; MIDDLE AGED; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; MUTATION, MISSENSE; POLYMORPHISM, GENETIC; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SEQUENCE ANALYSIS, DNA; YOUNG ADULT;

HUMAN HERPESVIRUS 3;

EID: 66149101520     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.01806-08     Document Type: Article

References (23)

1. Barrett-Muir, W., F. T. Scott, P. Aaby, J. John, P. Matondo, Q. L.1Chaudhry, M. Siqueira, A. Poulsen, K. Yaminishi, and J. Breuer. 2003. Genetic variation of varicella-zoster virus: evidence for geographical separation of strains. J. Med. Virol. 70(Suppl. 1):S42-S47.
2. Barrett-Muir, W. B., R. Nichols, and J. Breuer. 2002. Phylogenetic analysis of varicella-zoster virus: evidence of intercontinental spread of genotypes and recombination. J. Virol. 76:1971-1979.
3. Carr, M. J., G. P. McCormack, and B. Crowley. 2004. Genetic variation in clinical varicella-zoster virus isolates collected in Ireland between 2002 and 2003. J. Med. Virol. 73:131-136. (Pubitemid 38429159)
4. Cohen, J. I., S. E. Straus, and A. M. Arvin. 2007. Varicella-zoster virus, p. 2773-2819. In D. M. Knipe and P. M. Howley (ed.), Fields virology, 5th ed. Lippincott Williams & Wilkins, Philadelphia, PA.
5. Faga, B., W. Maury, D. A. Bruckner, and C. Grose. 2001. Identification and mapping of single nucleotide polymorphisms in the varicella-zoster virus genome. Virology 280:1-6.
6. Hawrami, K., and J. Breuer. 1997. Analysis of United Kingdom wild-type strains of varicella-zoster virus: differentiation from the Oka vaccine strain. J. Med. Virol. 53:60-62.
7. Hawrami, K., D. Harper, and J. Breuer. 1996. Typing of varicella-zoster virus by amplification of DNA polymorphisms. J. Virol. Methods 57:169-174. (Pubitemid 26106399)
8. Hondo, R., Y. Yogo, M. Yoshida, A. Fujima, and S. Itoh. 1989. Distribution of varicella-zoster virus strains carrying a PstI-site-less mutation in Japan and DNA change responsible for the mutation. Jpn. J. Exp. Med. 59:233-237. (Pubitemid 20123967)
9. Koskiniemi, M., M. Lappalainen, D. S. Schmid, E. Rubtcova, and V. N. Loparev. 2007. Genotypic analysis of varicella-zoster virus and its seroprevalence in Finland. Clin. Vaccine Immunol. 14:1057-1061. (Pubitemid 47518070)
10. LaRussa, P., O. Lungu, I. Hardy, A. Gershon, S. P. Steinberg, and S. Silverstein. 1992. Restriction fragment length polymorphism of polymerase chain reaction products from vaccine and wild-type varicella-zoster virus isolates. J. Virol. 66:1016-1020.
11. LaRussa, P., S. Steinberg, A. Arvin, D. Dwyer, M. Burgess, M. Menegus, K. Rekrut, K. Yamanishi, and A. Gershon. 1998. Polymerase chain reaction and restriction fragment length polymorphism analysis of varicella-zoster virus isolates from the United States and other parts of the world. J. Infect. Dis. 178(Suppl. 1):64-66. (Pubitemid 28514273)
12. Loparev, V., E. Martro, E. Rubtcova, C. Rodrigo, J. C. Piette, E. Caumes, J. P. Vernant, D. S. Schmid, and A. M. Fillet. 2007. Toward universal varicella-zoster virus genotyping: diversity of VZV strains from France and Spain. J. Clin. Microbiol. 45:559-563.
13. Loparev, V. N., A. Gonzalez, M. Deleon-Carnes, G. Tipples, H. Fickenscher, E. G. Torfason, and D. S. Schmid. 2004. Global identification of three major genotypes of varicella-zoster virus: longitudinal clustering and strategies for genotyping. J. Virol. 78:8349-8358.
14. Loparev, V. N., T. Argaw, P. R. Krause, M. Takayama, and D. S. Schmid. 2000. Improved identification and differentiation of varicella-zoster virus (VZV) wild-type strains and an attenuated varicella vaccine strain using a VZV open reading frame 62-based PCR. J. Clin. Microbiol. 38:3156-3160.
15. Loparev, V. N., E. N. Rubtcova, C. J. Birch, J. D. Druce, D. S. Schmid, and M. C. Croxson. 2007. Identification of five major and two minor genotypes of varicella-zoster virus strains: a practical two-amplicon approach used to genotype clinical isolates in Australia and New Zealand. J. Virol. 81:12758-12765.
16. Norberg, P., J. A. Liljeqvist, T. Bergstrom, S. Sammons, D. S. Schmid, and V. N. Loparev. 2006. Complete-genome phylogenetic approach to varicella-zoster virus evolution: genetic divergence and evidence for recombination. J. Virol. 80:9569-9576.
17. Peters, G. A., S. D. Tyler, C. Grose, A. Severini, M. J. Gray, C. Upton, and G. A. Tipples. 2006. A full-genome phylogenetic analysis of varicella-zoster virus reveals a novel origin of replication-based genotyping scheme and evidence of recombination between major circulating genotypes. J. Virol. 80:9850-9860. (Pubitemid 44435659)
18. Quinlivan, M., A. Gershon, S. Steinberg, et al. 2005. An evaluation of single nucleotide polymorphisms used to differentiate vaccine and wild type strains of varicella-zoster virus. J. Med. Virol. 75:174-180.
19. Quinlivan, M., K. Hawrami, W. Barrett-Muir, J. Breuer, et al. 2002. The molecular epidemiology of varicella-zoster virus: evidence for geographic segregation. J. Infect. Dis. 186:888-894.
20. Sauerbrei, A., U. Eichhorn, S. Gawellek, R. Egerer, M. Schacke, and P. Wutzler. 2003. Molecular characterisation of varicella-zoster virus strains in Germany and differentiation from the Oka vaccine strain. J. Med. Virol. 71:313-319. (Pubitemid 37048476)
21. Sauerbrei, A., B. Uebe, and P. Wutzler. 2003. Molecular diagnosis of zoster post varicella vaccination. J. Clin. Virol. 27:190-199. (Pubitemid 37329340)
22. Sergeev, N., E. Rubtcova, V. Chizikov, D. S. Schmid, and V. N. Loparev. 2006. New mosaic subgenotype of varicella-zoster virus in the USA: VZV detection and genotyping by oligonucleotide-microarray. J. Virol. Methods 136:8-16.
23. Wagenaar, T. R., V. T. Chow, C. Buranathai, P. Thawatsupha, and C. Grose. 2003. The out of Africa model of varicella-zoster virus evolution: single nucleotide polymorphisms and private alleles distinguish Asian clades from European/North American clades. Vaccine 7:1072-1081.