Diversity of spirochetes in endodontic infections

Journal of Clinical Microbiology

Volumn 47, Issue 5, 2009, Pages 1352-1357

  Sakamoto, Mitsuo ^a   Siqueira Jr , José F ^b   Rôças, Isabela N ^b   Benno, Yoshimi ^a  

^a RIKEN BIORESOURCE CENTER   (Japan)

^b ESTÁCIO DE SÁ UNIVERSITY   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ADULT; AGED; ARTICLE; GENE LIBRARY; GENE SEQUENCE; GENETIC ANALYSIS; HUMAN; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PERIODONTITIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SPECIES DIVERSITY; SPECIES IDENTIFICATION; SPIROCHETE; TOOTH INFECTION; TREPONEMA;

TREPONEMA; TREPONEMA DENTICOLA; TREPONEMA MALTOPHILUM; TREPONEMA SOCRANSKII;

EID: 66149100363     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.02016-08     Document Type: Article

References (54)

1. Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Asai, Y., T. Jinno, H. Igarashi, Y. Ohyama, and T. Ogawa. 2002. Detection and quantification of oral treponemes in subgingival plaque by real-time PCR. J. Clin. Microbiol. 40:3334-3340.
3. Ashimoto, A., C. Chen, I. Bakker, and J. Slots. 1996. Polymerase chain reaction detection of 8 putative periodontal pathogens in subgingival plaque of gingivitis and advanced periodontitis lesions. Oral Microbiol. Immunol. 11:266-273. (Pubitemid 27324157)
4. Baumgartner, J. C., S. U. Khemaleelakul, and T. Xia. 2003. Identification of spirochetes (treponemes) in endodontic infections. J. Endod. 29:794-797. (Pubitemid 38650770)
5. Choi, B. K., B. J. Paster, F. E. Dewhirst, and U. B. Gobel. 1994. Diversity of cultivable and uncultivable oral spirochetes from a patient with severe destructive periodontitis. Infect. Immun. 62:1889-1895. (Pubitemid 24136992)
6. Cole, J. R., B. Chai, T. L. Marsh, R. J. Farris, Q. Wang, S. A. Kulam, S. Chandra, D. M. McGarrell, T. M. Schmidt, G. M. Garrity, and J. M. Tiedje. 2003. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31:442-443.
7. Dewhirst, F. E., M. A. Tamer, R. E. Ericson, C. N. Lau, V. A. Levanos, S. K. Boches, J. L. Galvin, and B. J. Paster. 2000. The diversity of periodontal spirochetes by 16S rRNA analysis. Oral Microbiol. Immunol. 15:196-202. (Pubitemid 30208582)
8. Edwards, A. M., D. Dymock, and H. F. Jenkinson. 2003. From tooth to hoof: treponemes in tissue-destructive diseases. J. Appl. Microbiol. 94:767-780.
9. Edwards, U., T. Rogall, H. Blöcker, M. Emde, and E. C. Bötter. 1989. Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res. 17:7843-7853.
10. Ellen, R. P., and V. B. Galimanas. 2005. Spirochetes at the forefront of periodontal infections. Periodontology 2000 38:13-32.
11. Foschi, F., F. Cavrini, L. Montebugnoli, P. Stashenko, V. Sambri, and C. Prati. 2005. Detection of bacteria in endodontic samples by polymerase chain reaction assays and association with defined clinical signs in Italian patients. Oral Microbiol. Immunol. 20:289-295. (Pubitemid 41208410)
12. Gomes, B. P., R. C. Jacinto, E. T. Pinheiro, E. L. Sousa, A. A. Zaia, C. C. Ferraz, and F. J. Souza-Filho. 2006. Molecular analysis of Filifactor alocis, Tannerella forsythia, and Treponema denticola associated with primary endodontic infections and failed endodontic treatment. J. Endod. 32:937-940.
13. Gomes, B. P., F. Montagner, R. C. Jacinto, A. A. Zaia, C. C. Ferraz, and F. J. Souza-Filho. 2007. Polymerase chain reaction of Porphyromonas gingivalis, Treponema denticola, and Tannerella forsythia in primary endodontic infections. J. Endod. 33:1049-1052.
14. Jacinto, R. C., B. P. Gomes, M. Desai, D. Rajendram, and H. N. Shah. 2007. Bacterial examination of endodontic infections by clonal analysis in concert with denaturing high-performance liquid chromatography. Oral Microbiol. Immunol. 22:403-410. (Pubitemid 47621819)
15. Jung, I. Y., B. Choi, K. Y. Kum, Y. J. Yoo, T. C. Yoon, S. J. Lee, and C. Y. Lee. 2001. Identification of oral spirochetes at the species level and their association with other bacteria in endodontic infections. Oral Surg. Oral Med. Oral Pathol. Oral Radiol. Endod. 92:329-334. (Pubitemid 33608878)
16. Kroes, I., P. W. Lepp, and D. A. Relman. 1999. Bacterial diversity within the human subgingival crevice. Proc. Natl. Acad. Sci. USA 96:14547-14552.
17. Kumar, P. S., A. L. Griffen, M. L. Moeschberger, and E. J. Leys. 2005. Identification of candidate periodontal pathogens and beneficial species by quantitative 16S clonal analysis. J. Clin. Microbiol. 43:3944-3955. (Pubitemid 41129685)
18. Kumar, S., K. Tamura, I. B. Jakobsen, and M. Nei. 2001. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245.
19. Maiwald, M. 2004. Broad-range PCR for detection and identification of bacteria, p. 379-390. In D. H. Persing, F. C. Tenover, J. Versalovic, Y.-W. Tang, D. Relman, and T. J. White (ed.), Molecular microbiology. Diagnostic principles and practice. ASM Press, Washington, DC.
20. McPherson, M. J., and S. G. Moller. 2000. PCR. BIOS Scientific Publishers Ltd., Oxford, United Kingdom.
21. Miller, W. D. 1894. An introduction to the study of the bacterio-pathology of the dental pulp. Dent. Cosmos 36:505-528.
22. Munson, M. A., T. Pitt-Ford, B. Chong, A. Weightman, and W. G. Wade. 2002. Molecular and cultural analysis of the microflora associated with endodontic infections. J. Dent. Res. 81:761-766.
23. Parrish, K. D., and E. P. Greenberg. 1995. A rapid method for extraction and purification of DNA from dental plaque. Appl. Environ. Microbiol. 61:4120-4123.
24. Paster, B. J., S. K. Boches, J. L. Galvin, R. E. Ericson, C. N. Lau, V. A. Levanos, A. Sahasrabudhe, and F. E. Dewhirst. 2001. Bacterial diversity in human subgingival plaque. J. Bacteriol. 183:3770-3783. (Pubitemid 32510445)
25. Rôças, I. N., and J. F. Siqueira, Jr. 2005. Occurrence of two newly named oral treponemes - Treponema parvum and Treponema putidum - in primary endodontic infections. Oral Microbiol. Immunol. 20:372-375.
26. Rôças, I. N., and J. F. Siqueira, Jr. 2008. Root canal microbiota of teeth with chronic apical periodontitis. J. Clin. Microbiol. 46:3599-3606.
27. Rôças, I. N., J. F. Siqueira, Jr., A. F. Andrade, and M. Uzeda. 2003. Oral treponemes in primary root canal infections as detected by nested PCR. Int. Endod. J. 36:20-26.
28. Rôças, I. N., and J. F. Siqueira, Jr. 2006. Characterization of Dialister species in infected root canals. J. Endod. 32:1057-1061.
29. Rolph, H. J., A. Lennon, M. P. Riggio, W. P. Saunders, D. MacKenzie, L. Coldero, and J. Bagg. 2001. Molecular identification of microorganisms from endodontic infections. J. Clin. Microbiol. 39:3282-3289. (Pubitemid 32834021)
30. Rupf, S., S. Kannengiesser, K. Merte, W. Pfister, B. Sigusch, and K. Eschrich. 2000. Comparison of profiles of key periodontal pathogens in periodontium and endodontium. Endod. Dent. Traumatol. 16:269-275.
31. Saito, D., R. de Toledo Leonardo, J. L. M. Rodrigues, S. M. Tsai, J. F. Hofling, and R. B. Gonçalves. 2006. Identification of bacteria in endodontic infections by sequence analysis of 16S rDNA clone libraries. J. Med. Microbiol. 55:101-107. (Pubitemid 43031245)
32. Sakamoto, M., I. N. Rôças, J. F. Siqueira, Jr., and Y. Benno. 2006. Molecular analysis of bacteria in asymptomatic and symptomatic endodontic infections. Oral Microbiol. Immunol. 21:112-122.
33. Sakamoto, M., J. F. Siqueira, Jr., I. N. Rôças, and Y. Benno. 2007. Bacterial reduction and persistence after endodontic treatment procedures. Oral Microbiol. Immunol. 22:19-23. (Pubitemid 46096192)
34. Sakamoto, M., M. Umeda, and Y. Benno. 2005. Molecular analysis of human oral microbiota. J. Periodontal Res. 40:277-285. (Pubitemid 40655856)
35. Sassone, L. M., R. A. Fidel, M. Faveri, R. Guerra, L. Figueiredo, S. R. Fidel, and M. Feres. 2008. A microbiological profile of symptomatic teeth with primary endodontic infections. J. Endod. 34:541-545.
36. Siqueira, J. F., Jr. 2008. Microbiology of apical periodontitis, p. 135-196. In D. Ørstavik and T. Pitt Ford (ed.), Essential endodontology, 2nd ed. Blackwell Munksgaard Ltd., Oxford, United Kingdom.
37. Siqueira, J. F., Jr., and I. N. Rôças. 2005. Exploiting molecular methods to explore endodontic infections. Part 1: current molecular technologies for microbiological diagnosis. J. Endod. 31:411-423.
38. Siqueira, J. F., Jr., and I. N. Rôças. 2003. PCR-based identification of Treponema maltophilum, T amylovorum, T medium, and T lecithinolyticum in primary root canal infections. Arch. Oral Biol. 48:495-502.
39. Siqueira, J. F., Jr., and I. N. Rôças. 2003. Treponema socranskii in primary endodontic infections as detected by nested PCR. J. Endod. 29:244-247.
40. Siqueira, J. F., Jr., and I. N. Rôças. 2004. Treponema species associated with abscesses of endodontic origin. Oral Microbiol. Immunol. 19:336-339.
41. Siqueira, J. F., Jr., I. N. Rôças, C. D. Cunha, and A. S. Rosado. 2005. Novel bacterial phylotypes in endodontic infections. J. Dent. Res. 84:565-569.
42. Siqueira, J. F., Jr., I. N. Rôças, A. Favieri, J. C. Oliveira, and K. R. Santos. 2001. Polymerase chain reaction detection of Treponema denticola in endodontic infections within root canals. Int. Endod. J. 34:280-284.
43. Siqueira, J. F., Jr., I. N. Rôças, A. Favieri, and K. R. Santos. 2000. Detection of Treponema denticola in endodontic infections by 16S rRNA gene-directed polymerase chain reaction. Oral Microbiol. Immunol. 15:335-337.
44. Siqueira, J. F., Jr., I. N. Rôças, J. C. Oliveira, and K. R. Santos. 2001. Detection of putative oral pathogens in acute periradicular abscesses by 16S rDNA-directed polymerase chain reaction. J. Endod. 27:164-167.
45. Siqueira, J. F., Jr., I. N. Rôças, and A. S. Rosado. 2004. Investigation of bacterial communities associated with asymptomatic and symptomatic endodontic infections by denaturing gradient gel electrophoresis fingerprinting approach. Oral Microbiol. Immunol. 19:363-370. (Pubitemid 39487669)
46. Siqueira, J. F., Jr., I. N. Rôças, R. Souto, M. de Uzeda, and A. P. Colombo. 2000. Checkerboard DNA-DNA hybridization analysis of endodontic infections. Oral Surg. Oral Med. Oral Pathol. Oral Radiol. Endod. 89:744-748.
47. Siqueira, J. F., Jr., I. N. Rôças, R. Souto, M. Uzeda, and A. P. Colombo. 2001. Microbiological evaluation of acute periradicular abscesses by DNA-DNA hybridization. Oral Surg. Oral Med. Oral Pathol. Oral Radiol. Endod. 92:451-457. (Pubitemid 33601746)
48. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
49. Trope, M., L. Tronstad, E. S. Rosenberg, and M. Listgarten. 1988. Darkfield microscopy as a diagnostic aid in differentiating exudates from endodontic and periodontal abscesses. J. Endod. 14:35-38.
50. van Winkelhoff, A. J., A. W. Carlee, and J. de Graaff. 1985. Bacteroides endodontalis and other black-pigmented Bacteroides species in odontogenic abscesses. Infect. Immun. 49:494-498.
51. Vianna, M. E., H. P. Horz, B. P. Gomes, and G. Conrads. 2005. Microarrays complement culture methods for identification of bacteria in endodontic infections. Oral Microbiol. Immunol. 20:253-258. (Pubitemid 40868400)
52. Vickerman, M. M., K. A. Brossard, D. B. Funk, A. M. Jesionowski, and S. R. Gill. 2007. Phylogenetic analysis of bacterial and archaeal species in symptomatic and asymptomatic endodontic infections. J. Med. Microbiol. 56:110-118. (Pubitemid 46036283)
53. Wade, W. G., D. A. Spratt, D. Dymock, and A. J. Weightman. 1997. Molecular detection of novel anaerobic species in dentoalveolar abscesses. Clin. Infect. Dis. 25(Suppl. 2):S235-S236. (Pubitemid 27392575)
54. Willis, S. G., K. S. Smith, V. L. Dunn, L. A. Gapter, K. H. Riviere, and G. R. Riviere. 1999. Identification of seven Treponema species in health- and disease-associated dental plaque by nested PCR. J. Clin. Microbiol. 37:867-869.