Molecular and biochemical identification of alien chromosome additions in shallot (Allium cepa L. Aggregatum group) carrying extra chromosome(s) of bunching onion (A. fistulosum L.)

Genes and Genetic Systems

Volumn 84, Issue 1, 2009, Pages 43-55

  Yaguchi, Shigenori ^a   Hang, Tran Thi Minh ^b   Tsukazaki, Hikaru ^c   Vu, Quynh Hoa ^a   Masuzaki, Shin Ichi ^d   Wako, Tadayuki ^c   Masamura, Noriya ^e   Onodera, Shuichi ^f   Shiomi, Norio ^f   Yamauchi, Naoki ^a   Shigyo, Masayoshi ^a  

^a YAMAGUCHI UNIVERSITY   (Japan)

^b VIETNAM NATIONAL UNIVERSITY OF AGRICULTURE   (Viet Nam)

^c NATIONAL INSTITUTE OF VEGETABLE AND TEA SCIENCE   (Japan)

^d Forensic Science Laboratory   (Japan)

^e House Foods Corporation   (Japan)

^f RAKUNO GAKUEN UNIVERSITY   (Japan)

Author keywords

Alien addition line; Cysteine sulfoxide; Fructan; Single alien deletion

Indexed keywords

CYSTEINE DERIVATIVE; FRUCTAN;

ARTICLE; CARBOHYDRATE ANALYSIS; CHEMICAL ANALYSIS; CHROMOSOMAL LOCALIZATION; CHROMOSOME ADDITION; CHROMOSOME DELETION; GENE DELETION; GENE EXPRESSION; GENETIC MARKER; GENOME; HETEROZYGOTE; MARKER GENE; MOLECULAR BIOLOGY; MONOSOMY; NONHUMAN; NUCLEOTIDE SEQUENCE; ONION; PLANT BULB; PLANT LEAF; POLYMERIZATION; SHALLOT; SUPERNUMERARY CHROMOSOME; WELSH ONION;

CHIMERA; CHROMOSOMES, PLANT; FRUCTANS; GENES, PLANT; ONIONS; SHALLOTS;

ALLIUM ASCALONICUM; ALLIUM CEPA; ALLIUM FISTULOSUM;

EID: 65949083326     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.84.43     Document Type: Article

References (52)

1. Anamthawat-Jónsson, K., Schwarzacher, T., Leitch, A. R., Bennett, M. D., and Heslop-Harrison, J. S. (1990) Discrimination between closely related Triticeae species using genomic DNA as a probe. Theor. Appl. Genet. 79, 721-728.
2. Auger, D. L., Gray, A. D., Ream, T. S., Kato, A., Coe, E. H. Jr., and Birchler, J. A. (2005) Nonadditive gene expression in diploid and triploid hybrids of maize. Genetics 169, 389-397.
3. Barthes, L., and Ricroch, A. (2001) Interspecific chromosomal rearrangements in monosomic addition lines of Allium. Genome 44, 926-935. (Pubitemid 33023456)
4. Causse, M., Rocher, J. -P., Pelleschi, S., Barriere, Y., De Vienne, D., and Prioul. J.-L. (1995) Sucrose phosphate synthase: an enzyme with heterotic activity correlated with maize growth. Crop Sci. 35, 995-1001.
5. Chang, S. B., and de Jong, H. (2005) Production of alien chromosome additions and their utility in plant genetics. Cytogenet. Genome Res. 109, 335-343. (Pubitemid 40476107)
6. Cochran, F. D. (1950) A study of the species hybrid, Allium ascalonicum x Allium fistulosum and its backcrossed progenies. J. Amer. Soc. Hort. Sci. 55, 293-296.
7. Crowther, T., Collin, H. A., Smith, B., Tomsett, A. B., O'Connor, D., and Jones, M. G. (2005) Assessment of the flavour of fresh uncooked onions by taste-panels and analysis of flavour precursors, pyruvate and sugars. J. Sci. Food Agric. 85, 112-120.
8. De Vries, J. N. (1990) Onion chromosome nomenclature and homoeology relationships - workshop report. Euphytica 49, 1-3.
9. Dissanayake, P. K., Yaguchi, S., Yamauchi, N., and Shigyo, M. (2008) Using Allium alien monosomic addition lines to study chlorophyll degradation in stored Japanese bunching onion. J. Hortic. Sci. Biotechnol. 83, 388-394.
10. Emsweller, S. L., and Jones, H. A. (1935) Meiosis in Allium fistulosum, Allium cepa and their hybrid. Hilgardia 9, 277-288.
11. Fischer, D., and Bachmann, K. (2000) Onion microsatellites for germplasm analysis and their use in assessing intra- and interspecific relatedness within the subgenus Rhizirideum. Theor. Appl. Genet. 101, 153-164. (Pubitemid 30485895)
12. Hang, T. T. M., Shigyo, M., Yaguchi, S., Yamauchi, N., and Tashiro, Y. (2004a) Effect of single alien chromosome from shallot (Allium cepa L. Aggregatum group) on carbohydrate production in leaf blade of bunching onion (A. fistulosum L.). Genes Genet. Syst. 79, 345-350.
13. Hang, T. T. M., Shigyo, M., Yamauchi, N., and Tashiro, Y. (2004b) Production and characterization of alien chromosome additions in shallot (Allium cepa L. Aggregatum group) carrying extra chromosome(s) of Japanese bunching onion (A. fistulosum L.). Genes Genet. Syst. 79, 263-269.
14. Hizume, M. (1994) Allodiploid nature of Allium wakegi Araki revealed by genomic in situ hybridization and localization of 5S and 18S rDNAs. Jpn. J. Genet. 69, 407-415.
15. Kalkman, E. R. (1984) Analysis of the C-banded karyotype of Allium cepa L. Standard system of nomenclature and polymorphism. Genetica 65, 141-148.
16. Kim, S., Binzel, M. L., Park, S., Yoo, K.-S., and Pike, L. M. (2004) Inactivation of DFR (Dihydroflavonol 4-reductase) gene transcription results in blockage of anthocyanin production in yellow onions (Allium cepa). Mol. Breed. 14, 253-263.
17. King, J. J., Bradeen, J. M., Bark, O., McCallum, J. A., and Havey, M. J. (1998) A low-density genetic map of onion reveals a role for tandem duplication in the evolution of an extremely large diploid genome. Theor. Appl. Genet. 96, 52-62. (Pubitemid 28139588)
18. Kuhl, J. C., Cheung, F., Yuan, Q., Martin, W., Zewdie, Y., McCallum, J., Catanach, A., Rutherford, P., Sink, K. C., Jenderek, M., et al. (2004) A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales. Plant Cell 16, 114-125.
19. Levan, A. (1941) The cytology of the species hybrid Allium cepa x A. fistulosum and its polyploid derivatives. Hereditas 27, 253-272.
20. Maeda, T. (1937) Chiasma studies in Allium fistulosum, Allium cepa and their F1, F2, and backcross hybrids. Jpn. J. Genet. 13, 146-159.
21. Martin, W., McCallum, J., Shigyo, M., Jakse, J., Kuhl, J., Yamane, N., Pither-Joyce, M., Gokce, A., Sink, K., Town, C., et al. (2005) Genetic mapping of expressed sequences in onion and in silico comparisons with rice show scant colinearity. Mol. Gen. Genomics 274, 197-204.
22. Masuzaki, S., Shigyo, M., and Yamauchi, N. (2006a) Complete assignment of structural genes involved in flavonoid biosynthesis influencing bulb color to individual chromosomes of shallot (Allium cepa L.). Genes Genet. Syst. 81, 255-262.
23. Masuzaki, S., Shigyo, M., and Yamauchi, N. (2006b) Direct comparison between genomic constitution and flavonoid contents in Allium multiple alien addition lines reveals chromosomal locations of genes related to biosynthesis from dihydrokaempferol to quercetin glucosides in scaly leaf of shallot (Allium cepa L.). Theor. Appl. Genet. 112, 607-617.
24. McCallum, J. (2007) Onion. In: Genome mapping and molecular breeding in plants, volume 5 vegetables (ed.: K. Chittaranjan), pp. 331-347. Springer-Verlag, Berlin, Heidelberg.
25. McCallum, J., Clarke, A., Pither-Joyce, M., Shaw, M., Butler, R., Brash, D., Scheffer, J., Sims, I., van Heusden, S., Shigyo, M., et al. (2006) Genetic mapping of a major gene affecting onion bulb fructan content. Theor. Appl. Genet. 112, 958- 967.
26. Muller, J., Aeschbacher, R. A., Sprenger, N., Boller, T., and Wiemken, A., (2000) Disaccharide-mediated regulation of sucrose:fructan-6- fructosyltransferase, a key enzyme of fructan synthesis in barley leaves. Plant Physiol. 123, 265-274
27. Ohara, T., Song, Y. S., Tsukazaki, H., Wako, T., Nunome, T., and Kojima, A. (2005) Construction of a genetic linkage map of Japanese bunching onion (Allium fistulosum) based on AFLP and SSR markers. Euphytica 144, 255-263.
28. Peffley, E. B. (1986) Evidence for chromosomal differentiation of Allium fistulosum and A. cepa. J. Amer. Soc. Hort. Sci. 111, 126-129.
29. Prioul, J., Pelleschi, S., Sene, M., Theevenot, C., Causse, M., de Vienne, D., and Leonardi, A. (1999) From QTLs for enzyme activity to candidate genes in maize. J. Exp. Bot. 50, 1281-1288. (Pubitemid 129517559)
30. Schwarzacher, T., Anamthawat-Jonsson, K., Harrison, G. E., Islam, A. K. M. R., Jia, J. Z., King, I. P., Leitch, A. R., Miller, T. E., Reader, S. M., Rogers, W. J., et al. (1992) Genomic in situ hybridization to identify alien chromosomes and chromosome segments in wheat. Theor. Appl. Genet. 84, 778-786.
31. Schwimmer, S., and Weston, W. J. (1961) Onion flavor and odor: Enzymatic development of pyruvic acid in onion as a measure of pungency. J. Agric. Food Chem. 9, 301-304.
32. Shibata, F., and Hizume, M. (2002) Evolution of 5S rDNA units and their chromosomal localization in Allium cepa and Allium schoenoprasum revealed by microdissection and FISH. Theor. Appl. Genet. 105, 167-172.
33. Shigyo, M., Tashiro, Y., and Miyazaki, S. (1994) Chromosomal locations of glutamate oxaloacetate transaminase gene loci in Japanese bunching onion (Allium fistulosum L.) and shallot (A. cepa L. Aggregatum group). Jpn. J. Genet. 69, 417-424.
34. Shigyo, M., Tashiro, Y., Isshiki, S., and Miyazaki, S. (1995a) Chromosomal locations of five isozyme gene loci (Lap-1, Got-1, 6-Pgdh-2, Adh-1 and Gdh-1) in shallot (Allium cepa L. Aggregatum group). Jpn. J. Genet. 70, 399-407.
35. Shigyo, M., Tashiro, Y., Isshiki, S., and Miyazaki, S. (1995b) Chromosomal locations of isocitrate dehydrogenase and phosphoglucoisomerase gene loci in shallot (Allium cepa L. Aggregatum group). Jpn. J. Genet. 70, 627-632.
36. Shigyo, M., Tashiro, Y., Isshiki, S., and Miyazaki, S. (1995c) Genetic analyses of glutamate dehydrogenase isozymes in cultivated and wild species of section Cepa in Allium. J. Japan. Soc. Hort. Sci. 64, 121-127.
37. Shigyo, M., Tashiro, Y., Isshiki, S., and Miyazaki, S. (1996) Establishment of a series of alien monosomic addition lines of Japanese bunching onion (Allium fistulosum L.) with extra chromosomes from shallot (A. cepa L. Aggregatum group). Genes Genet. Syst. 71, 363-371.
38. Shigyo, M., Iino, M., Isshiki, S., and Tashiro, Y. (1997a) Morphological characteristics of a series of alien monosomic addition lines of Japanese bunching onion (Allium fistulosum L.) with extra chromosomes from shallot (A. cepa L. Aggregatum group). Genes Genet. Syst. 72, 181-186.
39. Shigyo, M., Tashiro, Y., Iino, M., Terahara, N., Ishimaru, K., and Isshiki, S. (1997b) Chromosomal locations of genes related to flavonoid and anthocyanin production in leaf sheath of shallot (Allium cepa L. Aggregatum group). Genes Genet. Syst. 72, 149-152.
40. Shigyo, M., Imamura, K., Iino, M., Yamashita, K., and Tashiro, Y. (1998) Identification of alien chromosomes in a series of Allium fistulosum - A. cepa monosomic addition lines by means of genomic in situ hybridization. Genes Genet. Syst. 73, 311-315.
41. Shiomi, N., Onodera, S., and Sakai, H. (1997) Fructooligosaccharide content and Fructosyltransferase activity during growth of onion bulbs. New phytol. 136, 105-113. Swanson-Wagner, R. A., Jia, Y., DeCook, R., Borsuk, L. A., Nettleton, D., and Schnable, P. S. (2006) All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proc. Natl. Acad. Sci. USA 103, 6805-6810. (Pubitemid 28012348)
42. Tashiro, Y. (1984) Cytogenetic studies on the origin of Allium wakegi Araki. Bull. Fac. Agr. Saga Univ. 56, 1-63.
43. Tsukazaki, H., Fukuoka, H., Song, Y.-S., Yamashita, K.-I., Wako, T., and Kojima, A. (2006) Considerable heterogeneity in commercial F1 varieties of bunching onion (Allium fistulosum) and proposal of breeding scheme for conferring variety traceability using SSR markers. Breed. Sci. 56, 321-326.
44. Tsukazaki, H., Nunome, T., Fukuoka, H., Kanamori, H., Kono, I., Yamashita, K.-I., Wako, T., and Kojima, A. (2007) Isolation of 1,796 SSR clones from SSR-enriched DNA libraries of bunching onion (Allium fistulosum). Euphytica 157, 83-94.
45. Tsukazaki, H., Yamashita, K., Yaguchi, S., Masuzaki, S., Fukuoka, H., Yonemaru, J., Kanamori, H., Kono, I., Hang, T. T. M., Shigyo, M., et al. (2008) Construction of SSR-based chromosome map in bunching onion (Allium fistulosum). Theor. Appl. Genet. 117, 1213-1223.
46. van Heusden, A. W., Shigyo, M., Tashiro, Y., Vrielink-van Ginkel, R., and Kik, C. (2000a) AFLP linkage group assignment to the chromosomes of Allium cepa L. via monosomic addition lines. Theor. Appl. Genet. 100, 480-486.
47. van Heusden, A. W., van Ooijen, J. W., Vrielink-van Ginkel, R., Verbeek, W. H. J., Wietsma, W. A., and Kik, C. (2000b) A genetic map of an interspecific cross in Allium based on amplified fragment length polymorphism (AFLP™) markers. Theor. Appl. Genet. 100, 118-126.
48. Vijn, I., van Dijken, A., Luscher, M., Bos, A., Smeets, E., Weisbeek, P., Weimken, A., and Smeekens, S. (1998) Cloning of sucrose 1-fructosyltransferase from onion and synthesis of structurally defined fructan molecules from sucrose. Plant Physiol. 117, 1507-1513. (Pubitemid 128652923)
49. Wang, C., Van den Ende, W., and Tillberg, J.-E. (2000) Fructan accumulation induced by nitrogen deficiency in barley leaves correlates with the level of sucrose:fructan 6-fructosyltransferase mRNA. Planta 211, 701-707.
50. Yaguchi, S., Atarashi, M., Iwai, M., Masuzaki, S., Yamauchi, N., and Shigyo, M. (2008a) Production of alien addition lines in polyploid Bunching onion (Allium fistulosum) carrying 1A chromosome(s) of shallot (Allium cepa) and their application to breeding for a new vitamin C-rich vegetable. J. Amer. Soc. Hort. Sci. 133, 367-373.
51. Yaguchi, S., McCallum, J., Shaw, M., Pither-Joyce, M., Onodera, S., Shiomi, N., Yamauchi, N., and Shigyo, M. (2008b) Biochemical and genetic analysis of carbohydrate accumulation in Allium cepa L. Plant Cell Physiol. 49, 730-739.
52. Yoo, K. S., and Pike, L. M. (1998) Determination of flavor precursor compound S-alk(en)yl-L-cysteine sulfoxides by an HPLC method and their distribution in Allium species. Sci. Hortic. 75, 1-10. (Pubitemid 28309847)