Description of Crypsiphona tasmanica sp. nov. (Lepidoptera: Geometridae: Geometrinae), with notes on limitations in using DNA barcodes for delimiting species

Australian Journal of Entomology

Volumn 48, Issue 2, 2009, Pages 113-124

  Õunap, Erki ^a,b,c   Viidalepp, Jaan ^b  

^a UNIVERSITY OF TARTU   (Estonia)

^b ESTONIAN UNIVERSITY OF LIFE SCIENCES   (Estonia)

^c UNIVERSITY OF TARTU   (Estonia)

Author keywords

COI; Crypsiphona; EF 1 ; Geometridae; Phylogeny; Tasmania

Indexed keywords

GEOMETRIDAE; GEOMETRINAE; LEPIDOPTERA;

EID: 65849467953     PISSN: 13266756     EISSN: 14406055     Source Type: Journal    
DOI: 10.1111/j.1440-6055.2009.00695.x     Document Type: Article

References (58)

1. Bandelt H-J, Forster P Röhl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution 16, 37 48. (Pubitemid 29024937)
2. Blaxter M. 2003. Counting angels with DNA. Nature 421, 122 124.
3. Blaxter ML. 2004. The promise of a DNA taxonomy. Philosophical Transactions of the Royal Society B-Biological Sciences 359, 669 679. (Pubitemid 38504156)
4. Brower AVZ. 2006. Problems with DNA barcodes for species delimitation: 'ten species' of Astraptes fulgerator reassessed (Lepidoptera: Hesperiidae). Systematics and Biodiversity 4, 127 132. (Pubitemid 43825010)
5. Cho S, Mitchell A, Regier JC et al. 1995. A highly conserved nuclear gene for low-level phylogenetics: elongation factor-1α recovers morphology-based tree for heliothine moths. Molecular Biology and Evolution 12, 650 656.
6. Cognato AI. 2006. Standard percent DNA sequence difference for insects does not predict species boundaries. Journal of Economic Entomology 99, 1037 1045. (Pubitemid 44645585)
7. Common IFB. 1993. Moths of Australia. Melbourne University Press, Melbourne, Australia.
8. Costa FO, deWaard J, Boutillier J et al. 2007. Biological identifications through DNA barcodes: the case of Crustacea. Canadian Journal of Fisheries and Aquatic Sciences 64, 272 295. (Pubitemid 46714651)
9. DeSalle R, Egan MG Siddall M. 2005. The unholy trinity: taxonomy, species delimitation and DNA barcoding. Philosophical Transactions of the Royal Society B-Biological Sciences 360, 1905 1916. (Pubitemid 44365051)
10. Dodson JR, Mitchell FJG, Bögeholz H Julian H. 1998. Dynamics of temperate rainforest from fine resolution pollen analysis, Upper Ringarooma River, northeastern Tasmania. Austral Ecology 23, 550 561. (Pubitemid 128655925)
11. Drummond AJ Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7, 214.
12. Ebach MC Holdrege C. 2005a. More taxonomy, not DNA barcoding. BioScience 55, 822 823. (Pubitemid 41443693)
13. Ebach MC Holdrege C. 2005b. DNA barcoding is no substitute for taxonomy. Nature 434, 697. (Pubitemid 40558350)
14. Elias M, Hill RI, Willmott KR et al. 2007. Limited performance of DNA barcoding in a diverse community of tropical butterflies. Proceedings of the Royal Society B: Biological Sciences 274, 2881 2889. (Pubitemid 350057943)
15. Goldfinch GM. 1929. Revision of Australian Geometridae (Lepidoptera), containing a revision of the archaic types of the family, with notes and descriptions of new species. Proceedings of the Linnean Society of New South Wales 54, 379 407.
16. Gordon D, Abajian C Green P. 1998. Consed: a graphical tool for sequence finishing. Genome Research 8, 195 202. (Pubitemid 28177231)
17. Hajibabaei M, Janzen DH, Burns JM, Hallwachs W Hebert PDN. 2005. DNA barcodes distinguish species of tropical Lepidoptera. Proceedings of the National Academy of Sciences of the United States of America 103, 968 971.
18. Hajibabaei M, Singer GAC, Hebert PDN Hickey DA. 2007. DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics. Trends in Genetics 23, 167 172. (Pubitemid 46497507)
19. Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41, 95 98.
20. Hardy NB, Gullan PJ Hodgson C. 2008. A subfamily-level classification of mealybugs (Hemiptera: Pseudococcidae) based on integrated molecular and morphological data. Systematic Entomology 33, 51 71.
21. Hausmann A. 2001. The Geometrid Moths of Europe. Vol. 1. Troduction. Archiearinae, Orthostixinae, Desmobathrinae, Alsophilinae, Geometrinae. Apollo Books, Stenstrup.
22. Hausmann A McQuillan P. 2006. Proceedings of the Forum Herbulot 2006. Integration of molecular, ecological and morphological data: recent progress towards the higher classification of the Geometridae (Hobart, 19-20 January 2006). Spixiana 29, 199 216.
23. Hebert PDN, Cywinska A Ball SL deWaard JR. 2003a. Biological identification through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences 270, 313 321. (Pubitemid 36228536)
24. Hebert PDN, Ratnasingham S deWaard JR. 2003b. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society B: Biological Sciences 270 (Biology Letters Supplement 1). S96 S99. (Pubitemid 36960325)
25. Hebert PDN, Stoeckle MY, Zemlak TS Francis CM. 2004a. Identification of birds through DNA barcodes. PLoS Biology 2, e312. doi:10.1371/journal.pbio. 0020312. (Pubitemid 39532927)
26. Hebert PDN, Penton EH, Burns JM, Janzen DH Hallwachs W. 2004b. Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences of the United States of America 101, 14812 14817. (Pubitemid 39410757)
27. Hope GS. 1978. The late Pleistocene and Holocene vegetational history of Hunter Island, North-Western Tasmania. Australian Journal of Botany 26, 493 514.
28. Knölke S, Erlacher S, Hausmann A, Miller MA Segerer AH. 2005. A procedure for combined genitalia dissection and DNA extraction in Lepidoptera. Insect Systematics and Evolution 35, 401 409.
29. Kruse JJ Sperling FAH. 2001. Molecular phylogeny within and between species of the Archips argyrospila complex (Lepidoptera: Tortricidae). Annals of the Entomological Society of America 94, 166 173. (Pubitemid 33734439)
30. Ladd PG, Orchiston DW Joyce EB. 1992. Holocene vegetation history of Flinders Island. New Phytologist 122, 757 767. (Pubitemid 23379216)
31. McKenzie GM Kershaw AP. 2000. The late glacial cycle from Wyelangta, the Otway region of Victoria, Australia. Palaeogeography, Palaeoclimatology, Palaeoecology 155, 177 193. (Pubitemid 30061524)
32. McQuillan PB. 2004. An overview of the Tasmanian geometrid moth fauna (Lepidoptera: Geometridae) and its conservation status. Journal of Insect Conservation 8, 209 220. (Pubitemid 40112247)
33. Mayr E. 1963. Animal Species and Evolution. Belknap Press, Cambridge, USA.
34. Meijerman L, Tuck KR De Vos R. 2000. Arthropods of Economic Importance. Interactive Tutorial for the Preparation of Genitalia in Microlepidoptera. World Biodiversity Database CD-ROM series, UNESCO, Amsterdam, Netherlands.
35. Monteiro A Pierce NE. 2001. Phylogeny of Bicyclus (Lepidoptera: Nymphalidae) inferred from COI, COII, and EF-1α gene sequences. Molecular Phylogenetics and Evolution 18, 264 281. (Pubitemid 32996470)
36. Nice CC Shapiro AM. 2001. Patterns of morphological, biochemical and molecular evolution in the Oeneis chryxus complex (Lepidoptera, Satyridae): a test of historical biogeographical hypotheses. Molecular Phylogenetics and Evolution 20, 111 123. (Pubitemid 32656906)
37. Õunap E, Viidalepp J Saarma U. 2005. Phylogenetic evaluation of the taxonomic status of Timandra griseata and T. comae (Lepidoptera: Geometridae: Sterrhinae). European Journal of Entomology 102, 607 615. (Pubitemid 43072078)
38. Õunap E, Viidalepp J Saarma U. 2008. Systematic position of Lythriini revised: transferred from Larentiinae to Sterrhinae (Lepidoptera, Geometridae). Zoologica Scripta 37, 405 413.
39. Page RD. 1996. TreeView: an application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences 12, 357 358. (Pubitemid 126760426)
40. Pitkin LM, Han X James S. 2007. Moths of the tribe Pseudoterpnini (Geometridae: Geometrinae): a review of the genera. Zoological Journal of the Linnean Society 150, 343 412. (Pubitemid 46906277)
41. Posada D Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817 818. (Pubitemid 28552116)
42. Rach J, DeSalle R, Sarkar IN, Schierwater B Hadrys H. 2008. Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata. Proceedings of the Royal Society B: Biological Sciences 275, 237 247. (Pubitemid 350295712)
43. Regier JC, Shultz JW Kambic RE. 2004. Phylogeny of basal hexapod lineages and estimates of divergence times. Annals of the Entomological Society of America 97, 411 419. (Pubitemid 38978695)
44. Roe AD Sperling FAH. 2007. Patterns of evolution of mitochondrial cytochrome c oxidase I and II DNA and implications for DNA barcoding. Molecular Phylogenetics and Evolution 44, 325 345. (Pubitemid 46839190)
45. Rubinoff D. 2006. DNA barcoding evolves into the familiar. Conservation Biology 20, 1548 1549. (Pubitemid 44436032)
46. Scheffer SJ Lewis ML. 2001. Two nuclear genes confirm mitochondrial evidence of cryptic species within Liriomyza huidobrensis (Diptera: Agromyzidae). Annals of the Entomological Society of America 94, 648 653. (Pubitemid 33734128)
47. Scoble MJ, ed. 1999. Geometrid Moths of the World. A Catalogue. CSIRO Publ, Collingwood, Australia.
48. Smith MA, Woodley NE, Janzen DH, Hallwachs W Hebert PDN. 2005. DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae). Proceedings of the National Academy of Sciences of the United States of America 103, 3657 3662. (Pubitemid 43376611)
49. Ståhls G Savolainen E. 2008. MtDNA COI barcodes reveal cryptic diversity in the Baetis vernus group (Ephemeroptera, Baetidae). Molecular Phylogenetics and Evolution 46, 82 87. (Pubitemid 350267223)
50. Stoeckle M. 2003. Taxonomy, DNA, and the Bar Code of Life. BioScience 53, 796 797. (Pubitemid 37143368)
51. Swofford DL. 1998. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, USA.
52. Thompson JD, Higgins DG Gibson TJ. 1994. ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673 4680. (Pubitemid 24354800)
53. Viidalepp J, Tammaru T, Snäll N, Ruohomäki K Wahlberg N. 2007. Cleorodes Warren, 1894 does not belong in the tribe Boarmiini (Lepidoptera: Geometridae). European Journal of Entomology 104, 303 309. (Pubitemid 46744715)
54. Waugh J. 2007. DNA barcoding in animal species: progress, potential and pitfalls. BioEssays 29, 188 197. (Pubitemid 46340253)
55. Wiemers M Fiedler K. 2007. Does the barcoding gap exist? - A case study in blue butterflies (Lepidoptera: Lycaenidae). Frontiers in Zoology 4, 8. (Pubitemid 46512172)
56. Wiley EO. 1978. The evolutionary species concept reconsidered. Systematic Zoology 27, 17 26.
57. Will KW Rubinoff D. 2004. Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification. Cladistics 20, 47 55. (Pubitemid 38370666)
58. Zakharov EV, Caterino MS Sperling FAH. 2004. Molecular phylogeny, historical biogeography and divergence time estimates for swallowtail butterflies of the genus Papilio (Lepidoptera: Papilionidae). Systematic Biology 53, 193 215. (Pubitemid 38611180)