Phylogeography of Cistus creticus L. on Corsica and Sardinia inferred by the TRNL-F and RPL32-TRNL sequences of cpDNA

Molecular Phylogenetics and Evolution

Volumn 52, Issue 2, 2009, Pages 538-543

  Falchi, Alessandra ^a   Paolini, Julien ^b   Desjobert, Jean Marie ^b   Melis, Alessandra ^c   Costa, Jean ^b   Varesi, Laurent ^b  

^a INSERM   (France)

^b UNIVERSITÉ DE CORSE   (France)

^c UNIVERSITY OF CAGLIARI   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CHLOROPLAST DNA; PLANT DNA;

ARTICLE; CISTUS; CLASSIFICATION; DNA SEQUENCE; FRANCE; GENE FLOW; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; ITALY; MOLECULAR EVOLUTION; PHYLOGENY;

CISTUS; DNA, CHLOROPLAST; DNA, PLANT; EVOLUTION, MOLECULAR; FRANCE; GENE FLOW; GENETIC VARIATION; GEOGRAPHY; HAPLOTYPES; ITALY; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

CISTUS; CISTUS CRETICUS;

EID: 65849122736     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.04.002     Document Type: Article

References (33)

1. Avise J.C., Arnold J., Ball R.M., Bermingham E., Lamb T., Neigel J.E., Reab C.A., and Saunders R.C. Intraspecific phylogeography: the mitochondrial DNA Bridge between populations genetics and systematics. Ann. Rev. Ecol. Syst. 18 (1987) 489-522
2. Avise J.C. Phylogeography: the history and formation of species (2000), Haward University Press Cambridge, Massachussetts
3. Batista F., Bañares A., Caujapé-Castells J., Carque E., Marrero-Gómez M., and Sosa P.A. Allozyme diversity in three endemic species of Cistus (Cistaceae) from the Canary Islands: intraspecific comparisons and implications for genetic conservation. Am. J. Bot. 88 (2001) 1582-1592
4. Caron H., Dumas S., Marque G., Messier C., Bandou E., Petit R.J., and Kremer A. Spatial and temporal distribution of chloroplast DNA polymorphism in a tropical tree species. Mol. Ecol. 9 8 (2000) 1089-1098
5. Clement M., Posada D., and Crandall K.A. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9 10 (2000) 1657-1659
6. Dutech C., Maggia L., and Joly H.I. Chloroplast diversity in Vouacapoua americana (Caesalpiniaceae), a neotropical forest tree. Mol. Ecol. 9 9 (2000) 1427-1432
7. Ennos R.A., Sinclair W.T., Hu X.S., and Langdon A. Using organelle markers to elucidate the history, ecology and evolution of plant populations. In: Hollingsworth P.M., Bateman R.M., and Gornall R.J. (Eds). Molecular Systematics and Plant Evolution (1999), Taylor and Francis, London, UK 1-19
8. Excoffier L., Laval G., and Schneider S. Arlequin version. 3.0: an integrated software package for population genetics data analysis. Evol. Bioinform. Online 1 (2005) 47-50
9. Farley R.A., and McNeilly T. Diversity and divergence in Cistus salviifolius (L.) populations from contrasting habitats. Hereditas 132 3 (2000) 183-192
10. Gaussen H., Leroy J.F., and Ozenda P. Précis de Botanique (1982), Masson, Paris
11. Guzmán B., and Vargas P. Systematics, character evolution, and biogeography of Cistus L. (Cistaceae) based on ITS, trnL-trnF, and matK sequences. Mol. Phylogenet. Evol. 37 3 (2005) 644-660
12. Jeanmonod D., and Gamisans J. Flora Corsica (2007), Edisud, Aix-en-Provence
13. Jolivet L., Dubois R., Fournier M., Goffe B., Michard A., and Jourdan C. Ductile extension in alpine Corsica. Geology 18 10 (1990) 1007-1010
14. King R.A., and Ferris C. Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Mol. Ecol. 7 (1998) 1151-1163
15. Kumar S., Nei M., Dudley J., and Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform. 9 4 (2008) 299-306
16. Lopez de Heredia U., Jiménez P., Diaz-Fernadez P., and Gil L. The Balearic Islands: a reservoir of cpDNA genetic variation for evergreen oaks. J. Biogeogr. 32 (2005) 939-949
17. Medail F., and Quezel P. Biodiversity hotspots in the Mediterranean basin: setting global conservation priorities. Conserv. Biol. 13 6 (1999) 1510-1513
18. Petit R.J., Pineau E., Demesure B., Bacilieri R., Ducousso A., and Kremer A. Chloroplast DNA footprints of postglacial recolonization by oaks. Proc. Natl. Acad. Sci. USA 94 18 (1997) 9996-10001
19. Petit R.J., and Vendramin G.G. Plant phylogeography based on organelle genes. In: Weiss S., and Ferrand N. (Eds). Phylogeography of Southern European Refugia: Evolutionary Perspectives on the Origins and Conservation of European Biodiversity (2007), Springer, pp 23-101
20. Quintela-Sabarís C., Kidd P.S., and Fraga M.I. Identification of metalliferous ecotypes of Cistus ladanifer L. using RAPD markers. Z. Naturforsch. 60 3-4 (2005) 229-235
21. Radicati di Brozolo F., and Giglia G. Further data on the Corsica-Sardinia rotation. Nature 241 (1973) 389-391
22. Raspé O., Saumitou-Laprade P., Cuguen J., and Jacquemart A.L. Chloroplast DNA haplotype variation and population differentiation in Sorbus aucuparia L. (Rosaceae: Maloideae). Mol. Ecol. 9 8 (2000) 1113-1122
23. Rogers A.R., and Harpending H. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9 (1992) 552-569
24. Rozas J., Sanchez-DelBarrio J.C., Messeguer X., and Rozas R. DnaSP: DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19 (2003) 2496-2497
25. Sang T. Utility of low-copy nuclear gene sequences in plant phylogenetics. Crit. Rev. Biochem. Mol. Biol. 37 3 (2002) 121-147
26. Schaal B.A., Hayworth D.A., Olsen K.M., Rauscher J.T., and Smith W.A. Phylogeographic studies in plants: problems and prospects. Mol. Ecol. 7 (1998) 465-474
27. Shaw J., Lickey E.B., Shilling E., and Small R.L. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenics studies in angiosperms: the tortoise and the hare III. Am. J. Bot. 94 3 (2007) 275-288
28. Sewell M.M., Parks C.R., and Chase M.W. Intraspecific chloroplast DNA variation and biogeography of North American Liriodendron L (Magnoliaceae). Evolution 50 (1996) 1147-1154
29. Taberlet P., Gielly L., Pautou G., and Bouvet J. Universal primers for amplification of three noncoding regions of chloroplast DNA. Plant Mol. Biol. 17 5 (1991) 1105-1109
30. Taberlet P. Biodiversity at the intraspecific level: the comparative phylogeographic approach. J. Biotechnol. 64 (1998) 91-100
31. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL X windows interface. Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 24 (1997) 4876-4882
32. Tremblay N.O., and Schoen D.J. Molecular phylogeography of Dryas integrifolia: glacial refugia and postglacial recolonization. Mol. Ecol. 8 (1999) 1187-1198
33. Wolfe K.H., Li W.H., and Sharp P.M. Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast and nuclear DNA. Proc. Natl. Acad. Sci. USA 84 (1987) 9054-9058