메뉴 건너뛰기




Volumn 9, Issue , 2009, Pages

Prediction of breast cancer by profiling of urinary RNA metabolites using Support Vector Machine-based feature selection

Author keywords

[No Author keywords available]

Indexed keywords

1 RIBOSYL PYRIDINIUM; CYTIDINE; DIHYDROURIDINE; INOSINE; NUCLEOSIDE; PSEUDOURIDINE; RNA DERIVATIVE; UNCLASSIFIED DRUG; URIDINE; RNA;

EID: 65649117768     PISSN: None     EISSN: 14712407     Source Type: Journal    
DOI: 10.1186/1471-2407-9-104     Document Type: Article
Times cited : (64)

References (38)
  • 1
    • 65649088617 scopus 로고    scopus 로고
    • World Health Organization (WHO)
    • World Health Organization (WHO), Causes of death 2008 http://www.who.int/ entity/healthinfo/statistics/bodgbddeathdalyestimates.xls
    • (2008) Causes of Death 2008
  • 3
    • 0001184472 scopus 로고    scopus 로고
    • Mechanism of RNA-Modifying and -Editing Enzymes
    • Washington: American Society for Microbiology Grosjean H, Benne R first
    • Garcia GA Goodenough-Lashua DM Mechanism of RNA-Modifying and -Editing Enzymes Modification and Editing of RNA Washington: American Society for Microbiology Grosjean H, Benne R first 1998, 1:135-168.
    • (1998) Modification and Editing of RNA , vol.1 , pp. 135-168
    • Garcia, G.A.1    Goodenough-Lashua, D.M.2
  • 5
    • 0032057381 scopus 로고    scopus 로고
    • Urinary nucleosides
    • 10095827
    • Schram KH Urinary nucleosides Mass Spectrom Rev 1998, 17:131-251. 10095827
    • (1998) Mass Spectrom Rev , vol.17 , pp. 131-251
    • Schram, K.H.1
  • 6
    • 0018888909 scopus 로고
    • Biological markers in breast carcinoma-clinical correlations with pseudouridine, N2, N2-dimethylguanosine, and 1-methylinosine
    • 7392649
    • Tormey DC Waalkes TP Gehrke CW Biological markers in breast carcinoma-clinical correlations with pseudouridine, N2, N2-dimethylguanosine, and 1-methylinosine J Surg Oncol 1980, 14:267-273. 7392649
    • (1980) J Surg Oncol , vol.14 , pp. 267-273
    • Tormey, D.C.1    Waalkes, T.P.2    Gehrke, C.W.3
  • 7
    • 0026503466 scopus 로고
    • Relationship of urinary pseudouridine and 1-methyladenosine to activity of leukemia and lymphoma
    • 1606704
    • Itoh K Konno T Sasaki T Ishiwata S Ishida N Misugaki M Relationship of urinary pseudouridine and 1-methyladenosine to activity of leukemia and lymphoma Clin Chim Acta 1992, 206:181-189. 1606704
    • (1992) Clin Chim Acta , vol.206 , pp. 181-189
    • Itoh, K.1    Konno, T.2    Sasaki, T.3    Ishiwata, S.4    Ishida, N.5    Misugaki, M.6
  • 9
    • 21244476783 scopus 로고    scopus 로고
    • Mass spectrometric identification of modified urinary nucleosides used as potential biomedical markers by LC-ITMS coupling
    • 15906010
    • Kammerer B Frickenschmidt A Muller CE Laufer S Gleiter CH Liebich H Mass spectrometric identification of modified urinary nucleosides used as potential biomedical markers by LC-ITMS coupling Anal Bioanal Chem 2005, 382;1017-1026. 15906010
    • (2005) Anal Bioanal Chem , vol.382 , pp. 1017-1026
    • Kammerer, B.1    Frickenschmidt, A.2    Muller, C.E.3    Laufer, S.4    Gleiter, C.H.5    Liebich, H.6
  • 10
    • 0033928550 scopus 로고    scopus 로고
    • Analysis of urinary nucleosides. I. Optimisation of high performance liquid chromatography/electrospray mass spectrometry
    • 10918368
    • Dudley E El-Sharkawi S Games DE Newton RP Analysis of urinary nucleosides. I. Optimisation of high performance liquid chromatography/ electrospray mass spectrometry Rapid Commun Mass Spectrom 2000, 14:1200-1207. 10918368
    • (2000) Rapid Commun Mass Spectrom , vol.14 , pp. 1200-1207
    • Dudley, E.1    El-Sharkawi, S.2    Games, D.E.3    Newton, R.P.4
  • 13
    • 53149121631 scopus 로고    scopus 로고
    • Identification of urinary modified nucleosides an ribosylated metbaolites in humans via combined ESI-FTICR MS and ESI-IT MS analysis
    • 18657436
    • Bullinger D Fux R Nicholson G Plontke S Belka C Laufer S Gleiter CH Kammerer B Identification of urinary modified nucleosides an ribosylated metbaolites in humans via combined ESI-FTICR MS and ESI-IT MS analysis J Am Soc Mass Spectrom 2008, 19:1500-1513. 18657436
    • (2008) J Am Soc Mass Spectrom , vol.19 , pp. 1500-1513
    • Bullinger, D.1    Fux, R.2    Nicholson, G.3    Plontke, S.4    Belka, C.5    Laufer, S.6    Gleiter, C.H.7    Kammerer, B.8
  • 14
    • 8844261879 scopus 로고    scopus 로고
    • Diagnosis of liver cancer using HPLC-based metabonomics avoiding false-positive result from hepatitis and hepatocirrhosis diseases
    • 15556516
    • Yang J Xu G Zheng Y Kong H Pang T Lv S Yang Q Diagnosis of liver cancer using HPLC-based metabonomics avoiding false-positive result from hepatitis and hepatocirrhosis diseases J Chromatogr B Analyt Technol Biomed Life Sci 2004, 813:59-65. 15556516
    • (2004) J Chromatogr B Analyt Technol Biomed Life Sci , vol.813 , pp. 59-65
    • Yang, J.1    Xu, G.2    Zheng, Y.3    Kong, H.4    Pang, T.5    Lv, S.6    Yang, Q.7
  • 15
    • 33745263730 scopus 로고    scopus 로고
    • Modified nucleosides: An accurate tumour marker for clinical diagnosis of cancer, early detection and therapy control
    • 16685264
    • Seidel A Brunner S Seidel P Fritz GI Herbarth O Modified nucleosides: An accurate tumour marker for clinical diagnosis of cancer, early detection and therapy control Br J Cancer 2006, 94:1726-1733. 16685264
    • (2006) Br J Cancer , vol.94 , pp. 1726-1733
    • Seidel, A.1    Brunner, S.2    Seidel, P.3    Fritz, G.I.4    Herbarth, O.5
  • 18
    • 33845314350 scopus 로고    scopus 로고
    • Mass spectrometry-based metabolic profiling reveals different metabolite patterns in invasive ovarian carcinomas and ovarian borderline tumors
    • 17108116
    • Denkert C Budczies J Kind T Weichert W Tablack P Sehouli J Niesporek S Konsgen D Dietel M Fiehn O Mass spectrometry-based metabolic profiling reveals different metabolite patterns in invasive ovarian carcinomas and ovarian borderline tumors Cancer Res 2006, 66:10795-10804. 17108116
    • (2006) Cancer Res , vol.66 , pp. 10795-10804
    • Denkert, C.1    Budczies, J.2    Kind, T.3    Weichert, W.4    Tablack, P.5    Sehouli, J.6    Niesporek, S.7    Konsgen, D.8    Dietel, M.9    Fiehn, O.10
  • 19
    • 34547663168 scopus 로고    scopus 로고
    • Urinary nucleosides based potential biomarker selection by support vector machine for bladder cancer recognition
    • 17693304
    • Mao Y Zhao X Wang S Cheng Y Urinary nucleosides based potential biomarker selection by support vector machine for bladder cancer recognition Anal Chim Acta 2007, 598:34-40. 17693304
    • (2007) Anal Chim Acta , vol.598 , pp. 34-40
    • Mao, Y.1    Zhao, X.2    Wang, S.3    Cheng, Y.4
  • 24
    • 33745561205 scopus 로고    scopus 로고
    • An Introduction into Variable and Feature Selection
    • Guyon I Elisseeff A An Introduction into Variable and Feature Selection J Machine Learning Research 2003, 3:1157-1182.
    • (2003) J Machine Learning Research , vol.3 , pp. 1157-1182
    • Guyon, I.1    Elisseeff, A.2
  • 27
    • 0015059044 scopus 로고
    • Altered transfer RNA methylase patterns in Marek's disease tumors
    • 4996578
    • Mandel LR Hacker B Maag TA Altered transfer RNA methylase patterns in Marek's disease tumors Cancer Res 1971, 31:613-616. 4996578
    • (1971) Cancer Res , vol.31 , pp. 613-616
    • Mandel, L.R.1    Hacker, B.2    Maag, T.A.3
  • 28
    • 0013944554 scopus 로고
    • TRNA methylases in tumors of animal and human origin
    • 219961 4291222
    • Tsutsui E Srinivasan PR Borek E TRNA methylases in tumors of animal and human origin Proc Natl Acad Sci USA 1966, 56:1003-1009. 219961 4291222
    • (1966) Proc Natl Acad Sci USA , vol.56 , pp. 1003-1009
    • Tsutsui, E.1    Srinivasan, P.R.2    Borek, E.3
  • 29
    • 0015059753 scopus 로고
    • Transfer RNA and transfer RNA modification in differentiation and neoplasia. Introduction
    • 5582119
    • Borek E Transfer RNA and transfer RNA modification in differentiation and neoplasia. Introduction Cancer Res 1971, 31:596-597. 5582119
    • (1971) Cancer Res , vol.31 , pp. 596-597
    • Borek, E.1
  • 30
    • 38849115197 scopus 로고    scopus 로고
    • Metabolic signature of breast cancer cell line MCF-7: Profiling of modified nucleosides via LC-IT MS coupling
    • 2219991 18047657
    • Bullinger D Neubauer H Fehm T Laufer S Gleiter CH Kammerer B Metabolic signature of breast cancer cell line MCF-7: Profiling of modified nucleosides via LC-IT MS coupling BMC Biochem 2007, 8:25. 2219991 18047657
    • (2007) BMC Biochem , vol.8 , pp. 25
    • Bullinger, D.1    Neubauer, H.2    Fehm, T.3    Laufer, S.4    Gleiter, C.H.5    Kammerer, B.6
  • 31
    • 2342631335 scopus 로고    scopus 로고
    • S-adenosylmethionine: Nothing goes to waste
    • 15130560
    • Fontecave M Atta M Mulliez E S-adenosylmethionine: Nothing goes to waste Trends Biochem Sci 2004, 29:243-249. 15130560
    • (2004) Trends Biochem Sci , vol.29 , pp. 243-249
    • Fontecave, M.1    Atta, M.2    Mulliez, E.3
  • 32
    • 0015501428 scopus 로고
    • Competing methyltransferase systems
    • 4338482
    • Kerr SJ Competing methyltransferase systems J Biol Chem 1972, 247:4248-4252. 4338482
    • (1972) J Biol Chem , vol.247 , pp. 4248-4252
    • Kerr, S.J.1
  • 33
    • 0018939983 scopus 로고
    • Biologic markers in breast carcinoma: Clinical correlations with urinary polyamines
    • 7397636
    • Tormey DC Waalkes TP Kuo KC Gehrke CW Biologic markers in breast carcinoma: Clinical correlations with urinary polyamines Cancer 1980, 46:741-747. 7397636
    • (1980) Cancer , vol.46 , pp. 741-747
    • Tormey, D.C.1    Waalkes, T.P.2    Kuo, K.C.3    Gehrke, C.W.4
  • 34
    • 1642488233 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae TAN1 gene is required for N4-acetylcytidine formation in tRNA
    • 1370561 15037780
    • Johansson Marcus JO Bystrom AS The Saccharomyces cerevisiae TAN1 gene is required for N4-acetylcytidine formation in tRNA RNA 2004, 10:712-719. 1370561 15037780
    • (2004) RNA , vol.10 , pp. 712-719
    • Johansson Marcus, J.O.1    Bystrom, A.S.2
  • 35
    • 0020073948 scopus 로고
    • Elevated urinary excretion of RNA catabolites as an early signal of tumor development in mice
    • 6178502
    • Thomale J Nass G Elevated urinary excretion of RNA catabolites as an early signal of tumor development in mice Cancer Lett 1982, 15:149-159. 6178502
    • (1982) Cancer Lett , vol.15 , pp. 149-159
    • Thomale, J.1    Nass, G.2
  • 36
    • 0037505128 scopus 로고    scopus 로고
    • Capillary electrophoretic profiling and pattern recognition analysis of urinary nucleosides from thyroid cancer patients
    • La S Cho J Kim JH Kim KR Capillary electrophoretic profiling and pattern recognition analysis of urinary nucleosides from thyroid cancer patients Anal Chim Acta 2003, 486:171-182.
    • (2003) Anal Chim Acta , vol.486 , pp. 171-182
    • La, S.1    Cho, J.2    Kim, J.H.3    Kim, K.R.4
  • 37
    • 0032814863 scopus 로고    scopus 로고
    • Characterisation and enzymatic properties of tRNA(guanine 26, N (2), N (2))-dimethyltransferase (Trm1p) from Pyrococcus furiosus
    • 10438627
    • Constantinesco F Motorin Y Grosjean H Characterisation and enzymatic properties of tRNA(guanine 26, N (2), N (2))-dimethyltransferase (Trm1p) from Pyrococcus furiosus J Mol Biol 1999, 291:375-392. 10438627
    • (1999) J Mol Biol , vol.291 , pp. 375-392
    • Constantinesco, F.1    Motorin, Y.2    Grosjean, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.