ProbeMatch: Rapid alignment of oligonucleotides to genome allowing both gaps and mismatches

Bioinformatics

Volumn 25, Issue 11, 2009, Pages 1424-1425

  Kim, You Jung ^a   Teletia, Nikhil ^b   Ruotti, Victor ^c   Maher, Christopher A ^d   Chinnaiyan, Arul M ^d   Stewart, Ron ^c   Thomson, James A ^c,e   Patel, Jignesh M ^b  

^a The Department of Civil and Environmental Engineering   (United States)

^b University of Wisconsin   (United States)

^c MORGRIDGE INSTITUTE FOR RESEARCH   (United States)

^d UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^e UNIVERSITY OF WISCONSIN SCHOOL OF MEDICINE AND PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; OLIGONUCLEOTIDE;

ANALYZER; ARTICLE; BASE MISPAIRING; CONTROLLED STUDY; GENE DELETION; GENE INSERTION; GENE MAPPING; GENETIC DATABASE; HUMAN; HUMAN CELL; INTERMETHOD COMPARISON; NUCLEOTIDE SEQUENCE; OLIGONUCLEOTIDE PROBE; PRIORITY JOURNAL; PROBEMATCH; SENSITIVITY ANALYSIS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE;

DATABASES, GENETIC; GENOME; GENOMICS; OLIGONUCLEOTIDES; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 65649116903     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp178     Document Type: Article

References (6)

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5. Li,R. et al. (2008) SOAP: Short oligonucleotide alignment program. Bioinformatics, 24, 713-714.
6. Jiang,H. et al. (2008) SeqMap: Mapping massive amount of oligonucleotides to the genome. Bioinformatics, 24, 2395-2396.