메뉴 건너뛰기




Volumn 52, Issue 9, 2009, Pages 2875-2879

An innovative method to study target protein-drug interactions by mass spectrometry

Author keywords

[No Author keywords available]

Indexed keywords

BIS(SULFOSUCCINIMIDYL)GLUTARATE; BIS(SULFOSUCCINIMIDYL)SUBERATE; GW 6471; LYSINE; N HYDROXYSUCCINIMIDE; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR ALPHA; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR ALPHA AGONIST; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR ANTAGONIST; REAGENT; UNCLASSIFIED DRUG; YS 81;

EID: 65649108952     PISSN: 00222623     EISSN: None     Source Type: Journal    
DOI: 10.1021/jm9000665     Document Type: Article
Times cited : (22)

References (37)
  • 1
    • 0034705128 scopus 로고    scopus 로고
    • High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry
    • Young, M. M.; Tang, N.; Hempel, J. C.; Oshiro, C. M.; Taylor, E. W.; Kuntz, I. D.; Gibson, B. W.; Dollinger, G. High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 5802-5806.
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 5802-5806
    • Young, M.M.1    Tang, N.2    Hempel, J.C.3    Oshiro, C.M.4    Taylor, E.W.5    Kuntz, I.D.6    Gibson, B.W.7    Dollinger, G.8
  • 2
    • 0347286732 scopus 로고    scopus 로고
    • Chemical cross-linking and mass spectrometry for mapping three-dimensional structures of proteins and protein complexes
    • Sinz, A. Chemical cross-linking and mass spectrometry for mapping three-dimensional structures of proteins and protein complexes. J. Mass Spectrom. 2003, 38, 1225-1237.
    • (2003) J. Mass Spectrom. , vol.38 , pp. 1225-1237
    • Sinz, A.1
  • 3
    • 33745742438 scopus 로고    scopus 로고
    • Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions
    • DOI 10.1002/mas.20082
    • Sinz, A. Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions. Mass Spectrom. Rev. 2006, 25, 663-682. (Pubitemid 44014105)
    • (2006) Mass Spectrometry Reviews , vol.25 , Issue.4 , pp. 663-682
    • Sinz, A.1
  • 5
    • 33846527153 scopus 로고    scopus 로고
    • Isotope-labeled photoaffinity reagents and mass spectrometry to identify protein-ligand interactions
    • Sinz, A. Isotope-labeled photoaffinity reagents and mass spectrometry to identify protein-ligand interactions. Angew. Chem., Int. Ed. 2006, 46, 660-662.
    • (2006) Angew. Chem., Int. Ed. , vol.46 , pp. 660-662
    • Sinz, A.1
  • 6
    • 64549119499 scopus 로고    scopus 로고
    • Cross-linking of a DOPA-containing peptide ligand into its G protein-coupled receptor
    • Umanah, G. K. E.; Son, C.; Ding, F.; Naider, F.; Becker, J. M. Cross-linking of a DOPA-containing peptide ligand into its G protein-coupled receptor. Biochemistry 2009, 48, 2033-2044.
    • (2009) Biochemistry , vol.48 , pp. 2033-2044
    • Umanah, G.K.E.1    Son, C.2    Ding, F.3    Naider, F.4    Becker, J.M.5
  • 7
    • 85013795111 scopus 로고    scopus 로고
    • Hermanson, G. T., Ed. Academic Press: Amsterdam
    • Hermanson, G. T., Ed. Bioconjugate Techniques, 2nd ed.; Academic Press: Amsterdam, 2008.
    • (2008) Bioconjugate Techniques, 2nd Ed.
  • 8
    • 0035326345 scopus 로고    scopus 로고
    • Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis
    • Müller, D. R.; Schindler, P.; Towbin, H.; Wirth, U.; Voshol, H.; Hoving, S.; Steinmetz, M. O. Isotope-tagged cross-linking reagents. A new tool in mass spectrometric protein interaction analysis. Anal. Chem. 2001, 73, 1927-1934.
    • (2001) Anal. Chem. , vol.73 , pp. 1927-1934
    • Müller, D.R.1    Schindler, P.2    Towbin, H.3    Wirth, U.4    Voshol, H.5    Hoving, S.6    Steinmetz, M.O.7
  • 9
    • 0036007815 scopus 로고    scopus 로고
    • Intramolecular cross-linking experiments on cytochrome c and ribonuclease a using an isotope multiplet method
    • DOI 10.1002/rcm.554
    • Pearson, K. M.; Pannell, L. K.; Fales, H. M. Intramolecular cross-linking experiments on cytochrome c and ribonuclease A using an isotope multiplet method. Rapid Commun. Mass Spectrom. 2002, 16, 149-159. (Pubitemid 34117996)
    • (2002) Rapid Communications in Mass Spectrometry , vol.16 , Issue.3 , pp. 149-159
    • Pearson, K.M.1    Pannell, L.K.2    Fales, H.M.3
  • 10
    • 12244285932 scopus 로고    scopus 로고
    • Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: Application to a calmodulin/target peptide complex
    • DOI 10.1021/ac0487294
    • Kalkhof, S.; Ihling, C.; Mechtler, K.; Sinz, A. Chemical cross-linking and high-performance Fourier transform ion cyclotron resonance mass spectrometry for protein interaction analysis: application to a calmodulin/target peptide complex. Anal. Chem. 2005, 77, 495-503. (Pubitemid 40116828)
    • (2005) Analytical Chemistry , vol.77 , Issue.2 , pp. 495-503
    • Kalkhof, S.1    Ihling, C.2    Mechtler, K.3    Sinz, A.4
  • 11
    • 0035800080 scopus 로고    scopus 로고
    • Mapping protein interfaces with a fluorogenic cross-linker and mass spectrometry: Application to nebulin-calmodulin complexes
    • Sinz, A.; Wang, K. Mapping protein interfaces with a fluorogenic cross-linker and mass spectrometry: application to nebulin-calmodulin complexes. Biochemistry. 2001, 40, 7903-7913.
    • (2001) Biochemistry. , vol.40 , pp. 7903-7913
    • Sinz, A.1    Wang, K.2
  • 12
    • 3042799329 scopus 로고    scopus 로고
    • Mapping spatial proximities of sulfhydryl groups in proteins using a fluorogenic cross-linker and mass spectrometry
    • DOI 10.1016/j.ab.2004.03.075, PII S0003269704003689
    • Sinz, A.; Wang, K. Mapping spatial proximities of sulfhydryl groups in proteins using a fluorogenic cross-linker and mass spectrometry. Anal. Biochem. 2004, 331, 27-32. (Pubitemid 38881554)
    • (2004) Analytical Biochemistry , vol.331 , Issue.1 , pp. 27-32
    • Sinz, A.1    Wang, K.2
  • 13
    • 0000964662 scopus 로고
    • Bimane fluorescent labels: Labeling of normal human red cells under physiological conditions
    • Kosower, N. S.; Kosower, E. M.; Newton, G. L.; Ranney, H. M. Bimane fluorescent labels: labeling of normal human red cells under physiological conditions. Proc. Natl. Acad. Sci. U.S.A. 1979, 76, 3382-3386.
    • (1979) Proc. Natl. Acad. Sci. U.S.A. , vol.76 , pp. 3382-3386
    • Kosower, N.S.1    Kosower, E.M.2    Newton, G.L.3    Ranney, H.M.4
  • 14
  • 16
    • 0033951038 scopus 로고    scopus 로고
    • Using photolabile ligands in drug discovery and development
    • Dormán, G.; Prestwich, G. D. Using photolabile ligands in drug discovery and development. Trends Biotechnol. 2000, 18, 64-77.
    • (2000) Trends Biotechnol. , vol.18 , pp. 64-77
    • Dormán, G.1    Prestwich, G.D.2
  • 17
    • 32544459067 scopus 로고    scopus 로고
    • Photochemical fishing approaches for identifying target proteins and elucidating the structure of a ligand-binding region using carbene-generating photoreactive probes
    • Sadakane, Y.; Hatanaka, Y. Photochemical fishing approaches for identifying target proteins and elucidating the structure of a ligand-binding region using carbene-generating photoreactive probes. Anal. Sci. 2006, 22, 209-218.
    • (2006) Anal. Sci. , vol.22 , pp. 209-218
    • Sadakane, Y.1    Hatanaka, Y.2
  • 18
    • 0032710343 scopus 로고    scopus 로고
    • Peroxisome proliferator-activated receptors: Three isotypes for a multitude of functions
    • Michalik, L.; Wahli, W. Peroxisome proliferator-activated receptors: three isotypes for a multitude of functions. Curr. Opin. Biotechnol. 1999, 10, 564-570.
    • (1999) Curr. Opin. Biotechnol. , vol.10 , pp. 564-570
    • Michalik, L.1    Wahli, W.2
  • 19
    • 0141611975 scopus 로고    scopus 로고
    • The potential role of peroxisome proliferator-activated receptors on inflammation in type 2 diabetes mellitus and atherosclerosis
    • Plutzky, J. The potential role of peroxisome proliferator-activated receptors on inflammation in type 2 diabetes mellitus and atherosclerosis. Am. J. Cardiol. 2003, 92, 34J-41J.
    • (2003) Am. J. Cardiol. , vol.92
    • Plutzky, J.1
  • 20
    • 1942518840 scopus 로고    scopus 로고
    • PPARs and the complex journey to obesity
    • DOI 10.1038/nm1025
    • Evans, R. M.; Barish, G. D.; Wang, Y. PPARs and the complex journey to obesity. Nat. Med. 2004, 10, 355-361. (Pubitemid 38508511)
    • (2004) Nature Medicine , vol.10 , Issue.4 , pp. 355-361
    • Evans, R.M.1    Barish, G.D.2    Wang, Y.-X.3
  • 21
    • 0027525576 scopus 로고
    • The peroxisome proliferator-activated receptor:retinoid X receptor heterodimer is activated by fatty acids and fibrate hypolipidaemic drugs
    • Issemann, I.; Prince, R. A.; Tugwood, J. D.; Green, S. The peroxisome proliferator-activated receptor:retinoid X receptor heterodimer is activated by fatty acids and fibrate hypolipidaemic drugs. J. Mol. Endocrinol. 1993, 11, 37-47. (Pubitemid 23297949)
    • (1993) Journal of Molecular Endocrinology , vol.11 , Issue.1 , pp. 37-47
    • Issemann, I.1    Prince, R.A.2    Tugwood, J.D.3    Green, S.4
  • 22
    • 0034569799 scopus 로고    scopus 로고
    • Peroxisome proliferator-activated receptors, coactivators, and downstream targets
    • Qi, C.; Zhu, Y.; Reddy, J. K. Peroxisome proliferator-activated receptors, coactivators, and downstream targets. Cell Biochem. Biophys. 2000, 32, 187-204.
    • (2000) Cell Biochem. Biophys. , vol.32 , pp. 187-204
    • Qi, C.1    Zhu, Y.2    Reddy, J.K.3
  • 23
    • 0033305213 scopus 로고    scopus 로고
    • Peroxisome proliferator-activated receptors: Nuclear control of metabolism
    • Desvergne, B.; Wahli, W. Peroxisome proliferator-activated receptors: nuclear control of metabolism. Endocr. Rev. 1999, 20, 649-688. (Pubitemid 30650602)
    • (1999) Endocrine Reviews , vol.20 , Issue.5 , pp. 649-688
    • Desvergne, B.1    Wahli, W.2
  • 26
    • 44649181077 scopus 로고    scopus 로고
    • Alpha-alkyl substituted pirinixic acid derivatives as potent dual agonists of the peroxisome proliferator activated receptor alpha and gamma
    • Rau, O.; Syha, Y.; Zettl, H.; Kock, M.; Bock, A.; Schubert-Zsilavecz, M. Alpha-alkyl substituted pirinixic acid derivatives as potent dual agonists of the peroxisome proliferator activated receptor alpha and gamma. Arch. Pharm. 2008, 341, 191-195.
    • (2008) Arch. Pharm. , vol.341 , pp. 191-195
    • Rau, O.1    Syha, Y.2    Zettl, H.3    Kock, M.4    Bock, A.5    Schubert-Zsilavecz, M.6
  • 27
    • 54049093931 scopus 로고    scopus 로고
    • Expression and purification of the ligand-binding domain of peroxisome proliferator-activated receptor alpha (PPARalpha)
    • Müller, M. Q.; Roth, C.; Sträter, N.; Sinz, A. Expression and purification of the ligand-binding domain of peroxisome proliferator-activated receptor alpha (PPARalpha). Protein Expression Purif. 2008, 62, 185-189.
    • (2008) Protein Expression Purif. , vol.62 , pp. 185-189
    • Müller, M.Q.1    Roth, C.2    Sträter, N.3    Sinz, A.4
  • 30
    • 29144481619 scopus 로고    scopus 로고
    • Mapping protein interfaces by chemical cross-linking and Fourier transform ion cyclotron resonance mass spectrometry: Application to a calmodulin/adenylyl cyclase 8 peptide complex
    • DOI 10.1255/ejms.748
    • Schmidt, A.; Kalkhof, S.; Ihling, C.; Cooper, D. M. F.; Sinz, A. Mapping protein interfaces by chemical cross-linking and Fourier transform ion cyclotron resonance mass spectrometry: application to a calmodulin/adenylyl cyclase 8 peptide complex. Eur. J. Mass Spectrom. 2005, 11, 525-534. (Pubitemid 41796541)
    • (2005) European Journal of Mass Spectrometry , vol.11 , Issue.5 , pp. 525-534
    • Schmidt, A.1    Kalkhof, S.2    Ihling, C.3    Cooper, D.M.F.4    Sinz, A.5
  • 31
    • 0035431321 scopus 로고    scopus 로고
    • Structure of the PPARα and -γ ligand binding domain in complex with AZ 242; ligand selectivity and agonist activation in the PPAR family
    • DOI 10.1016/S0969-2126(01)00634-7, PII S0969212601006347
    • Cronet, P.; Petersen, J. F.; Folmer, R.; Blomberg, N.; Sjöblom, K.; Karlsson, U.; Lindstedt, E. L.; Bamberg, K. Structure of the PPARalpha and -gamma ligand binding domain in complex with AZ 242; ligand selectivity and agonist activation in the PPAR family. Structure 2001, 9, 699-706. (Pubitemid 32772892)
    • (2001) Structure , vol.9 , Issue.8 , pp. 699-706
    • Cronet, P.1    Petersen, J.F.W.2    Folmer, R.3    Blomberg, N.4    Sjoblom, K.5    Karlsson, U.6    Lindstedt, E.-L.7    Bamberg, K.8
  • 32
    • 34248137526 scopus 로고    scopus 로고
    • Combined simulation and mutagenesis analyses reveal the involvement of key residues for peroxisome proliferator-activated receptor R helix 12 dynamic behavior
    • Michalik, L.; Zoete, V.; Krey, G.; Grosdidier, A.; Gelman, L.; Chodanowski, P.; Feige, J. N.; Desvergne, B.; Wahli, W.; Michielin, O. Combined simulation and mutagenesis analyses reveal the involvement of key residues for peroxisome proliferator-activated receptor R helix 12 dynamic behavior. J. Biol. Chem. 2007, 282, 9666-9677.
    • (2007) J. Biol. Chem. , vol.282 , pp. 9666-9677
    • Michalik, L.1    Zoete, V.2    Krey, G.3    Grosdidier, A.4    Gelman, L.5    Chodanowski, P.6    Feige, J.N.7    Desvergne, B.8    Wahli, W.9    Michielin, O.10
  • 33
    • 34547661571 scopus 로고    scopus 로고
    • Peroxisome proliferator-activated receptor structures: Ligand specificity, molecular switch and interactions with regulators
    • DOI 10.1016/j.bbalip.2007.01.007, PII S1388198107000108
    • Zoete, V.; Grosdidier, A.; Michielin, O. Peroxisome proliferator- activated receptor structures: ligand specificity, molecular switch and interactions with regulators. Biochim. Biophys. Acta 2007, 1771, 915-925. (Pubitemid 47208545)
    • (2007) Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids , vol.1771 , Issue.8 , pp. 915-925
    • Zoete, V.1    Grosdidier, A.2    Michielin, O.3
  • 35
    • 46749144156 scopus 로고    scopus 로고
    • Determination of disulfide bond patterns in laminin beta1 chain N-terminal domains by nano-high-performance liquid chromatography/matrix- assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometry
    • Kalkhof, S.; Haehn, S.; Ihling, C.; Paulsson, M.; Smyth, N.; Sinz, A. Determination of disulfide bond patterns in laminin beta1 chain N-terminal domains by nano-high-performance liquid chromatography/matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometry. Rapid Commun. Mass Spectrom. 2008, 22, 1933-1940.
    • (2008) Rapid Commun. Mass Spectrom. , vol.22 , pp. 1933-1940
    • Kalkhof, S.1    Haehn, S.2    Ihling, C.3    Paulsson, M.4    Smyth, N.5    Sinz, A.6
  • 36
    • 33645016907 scopus 로고    scopus 로고
    • Computer-assisted mass spectrometric analysis of naturally occurring and artificially introduced cross-links in proteins and protein complexes
    • de Koning, L. J.; Kasper, P. T.; Back, J. W.; Nessen, M. A.; Vanrobaeys, F.; Van Beeumen, J.; Gherardi, E.; de Koster, C. G.; de Jong, L. Computer-assisted mass spectrometric analysis of naturally occurring and artificially introduced cross-links in proteins and protein complexes. FEBS J. 2006, 273, 281-291.
    • (2006) FEBS J. , vol.273 , pp. 281-291
    • De Koning, L.J.1    Kasper, P.T.2    Back, J.W.3    Nessen, M.A.4    Vanrobaeys, F.5    Van Beeumen, J.6    Gherardi, E.7    De Koster, C.G.8    De Jong, L.9
  • 37
    • 0035514030 scopus 로고    scopus 로고
    • GPMAW, a software tool for analyzing proteins and peptides
    • Peri, S.; Steen, H.; Pandey, A. GPMAW, a software tool for analyzing proteins and peptides. Trends Biochem. Sci. 2001, 26, 687-689.
    • (2001) Trends Biochem. Sci. , vol.26 , pp. 687-689
    • Peri, S.1    Steen, H.2    Pandey, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.