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Volumn 5, Issue 2, 2009, Pages 149-155

Detection of fungal 18S rRNA sequences in conjunction with marine nematode 18S rRNA amplicons

Author keywords

18S rRNA; DGGE; Fungi; Marine nematodes

Indexed keywords

ASCOMYCOTA; BACTERIA (MICROORGANISMS); CHAETOTHYRIALES; FUNGI; HYPOCREALES; NEMATODA;

EID: 65549159996     PISSN: 18647782     EISSN: 18647790     Source Type: Journal    
DOI: 10.3354/ab00145     Document Type: Article
Times cited : (12)

References (45)
  • 1
    • 33244485954 scopus 로고    scopus 로고
    • Natural nematode communities are useful tools to address ecological and applied questions
    • Austen MC (2004) Natural nematode communities are useful tools to address ecological and applied questions. Nematol Monogr Perspect 2:1-17
    • (2004) Nematol Monogr Perspect , vol.2 , pp. 1-17
    • Austen, M.C.1
  • 2
    • 0035026813 scopus 로고    scopus 로고
    • Interactions between two arbuscular mycorrhizal fungi and fungivorous nematodes and control of the nematode with fenamifos
    • Bakhtiar Y, Miller D, Cavagnaro T, Smith S (2001) Interactions between two arbuscular mycorrhizal fungi and fungivorous nematodes and control of the nematode with fenamifos. Appl Soil Ecol 17:107-117
    • (2001) Appl Soil Ecol , vol.17 , pp. 107-117
    • Bakhtiar, Y.1    Miller, D.2    Cavagnaro, T.3    Smith, S.4
  • 4
    • 0001225414 scopus 로고    scopus 로고
    • Fungal molecular evolution: Gene trees and geologic time
    • McLaughlin DJ, McLaughlin EG, and Lemke PA eds, Part B. Springer, Berlin, p
    • Berbee ML, Taylor JW (2001) Fungal molecular evolution: gene trees and geologic time. In: McLaughlin DJ, McLaughlin EG, and Lemke PA (eds) The Mycota: systematics and evolution, Part B. Springer, Berlin, p 229-245
    • (2001) The Mycota: Systematics and evolution , pp. 229-245
    • Berbee, M.L.1    Taylor, J.W.2
  • 6
    • 0032485270 scopus 로고    scopus 로고
    • A molecular evolutionary framework for the phylum Nematoda
    • Blaxter ML, De Ley P, Garey JR, Liu LX and others (1998) A molecular evolutionary framework for the phylum Nematoda. Nature 392:71-75
    • (1998) Nature , vol.392 , pp. 71-75
    • Blaxter, M.L.1    De Ley, P.2    Garey, J.R.3    Liu, L.X.4    and others5
  • 7
    • 23744441536 scopus 로고    scopus 로고
    • A new species of Paecilomyces isolated from the Antarctic springtail Cryptopygus antarcticus
    • Bridge PD, Clark MS, Pearce DA (2005) A new species of Paecilomyces isolated from the Antarctic springtail Cryptopygus antarcticus. Mycotaxon 92:213-222
    • (2005) Mycotaxon , vol.92 , pp. 213-222
    • Bridge, P.D.1    Clark, M.S.2    Pearce, D.A.3
  • 9
    • 19944370479 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis as a tool for identification of marine nematodes
    • Cook AA, Bhadury P, Debenham NJ, Meldal BHM and others (2005) Denaturing gradient gel electrophoresis as a tool for identification of marine nematodes. Mar Ecol Prog Ser 291:103-113
    • (2005) Mar Ecol Prog Ser , vol.291 , pp. 103-113
    • Cook, A.A.1    Bhadury, P.2    Debenham, N.J.3    Meldal, B.H.M.4    and others5
  • 11
    • 0003147925 scopus 로고
    • The black yeasts and allied Hyphomycetes
    • de Hoog GS, Hermanides-Nijhof EJ (1977) The black yeasts and allied Hyphomycetes. Mycologia 69:1242-1244
    • (1977) Mycologia , vol.69 , pp. 1242-1244
    • de Hoog, G.S.1    Hermanides-Nijhof, E.J.2
  • 12
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12: 543-548
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 14
    • 34250748585 scopus 로고    scopus 로고
    • They've got a ticket to ride: Xenorhabdus nematophila-Steinernema carpocapsae symbiosis
    • Goodrich-Blair H (2007) They've got a ticket to ride: Xenorhabdus nematophila-Steinernema carpocapsae symbiosis. Curr Opin Microbiol 10:225-230
    • (2007) Curr Opin Microbiol , vol.10 , pp. 225-230
    • Goodrich-Blair, H.1
  • 15
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood
    • Guindon S, Gascuel O (2003) A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Syst Biol 52:696-704
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 16
    • 23144433822 scopus 로고    scopus 로고
    • PHYML Online: A webserver for fast maximum likelihood-based phylogenetic inference
    • Guindon S, Lethiec F, Duroux P, Gascuel O (2005) PHYML Online: a webserver for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33:W557-W559
    • (2005) Nucleic Acids Res , vol.33
    • Guindon, S.1    Lethiec, F.2    Duroux, P.3    Gascuel, O.4
  • 17
    • 27844550242 scopus 로고    scopus 로고
    • Soil nematodes mediate positive interactions between legume plants and rhizobium bacteria
    • Horiuchi J, Prithiviraj B, Bais HP, Kimball BA, Vivanco JM (2005) Soil nematodes mediate positive interactions between legume plants and rhizobium bacteria. Planta 222: 848-857
    • (2005) Planta , vol.222 , pp. 848-857
    • Horiuchi, J.1    Prithiviraj, B.2    Bais, H.P.3    Kimball, B.A.4    Vivanco, J.M.5
  • 20
    • 4544365032 scopus 로고    scopus 로고
    • Mycophycias, a new genus for the mycobiont of Apophlaea, Ascophyllum and Pelvetia
    • Kohlmeyer J, Volkmann-Kohlmeyer B (1998) Mycophycias, a new genus for the mycobiont of Apophlaea, Ascophyllum and Pelvetia. Systema Ascomycetum 16:1-7
    • (1998) Systema Ascomycetum , vol.16 , pp. 1-7
    • Kohlmeyer, J.1    Volkmann-Kohlmeyer, B.2
  • 21
    • 0035038268 scopus 로고    scopus 로고
    • Fungi on Juncus roemerianus: New coelomycetes with notes on Dwayaangam junci
    • Kohlmeyer J, Volkmann-Kohlmeyer B (2001) Fungi on Juncus roemerianus: new coelomycetes with notes on Dwayaangam junci. Mycol Res 105:500-505
    • (2001) Mycol Res , vol.105 , pp. 500-505
    • Kohlmeyer, J.1    Volkmann-Kohlmeyer, B.2
  • 22
    • 33750971464 scopus 로고    scopus 로고
    • Diversity of Basidiomycetes in Michigan agricultural soils
    • Lynch MDJ, Thorn RG (2006) Diversity of Basidiomycetes in Michigan agricultural soils. Appl Environ Microbiol 72: 7050-7056
    • (2006) Appl Environ Microbiol , vol.72 , pp. 7050-7056
    • Lynch, M.D.J.1    Thorn, R.G.2
  • 23
    • 0032998068 scopus 로고    scopus 로고
    • Attachment tests of Pasteuria penetrans to the cuticle of plant and animal parasitic nematodes, free living nematodes and srf mutants of Caenorhabditis elegans
    • Mendoza de Gives P, Davies KG, Morgan M, Behnke JM (1999) Attachment tests of Pasteuria penetrans to the cuticle of plant and animal parasitic nematodes, free living nematodes and srf mutants of Caenorhabditis elegans. J Helminthol 73:67-71
    • (1999) J Helminthol , vol.73 , pp. 67-71
    • Mendoza de Gives, P.1    Davies, K.G.2    Morgan, M.3    Behnke, J.M.4
  • 25
    • 34248167658 scopus 로고    scopus 로고
    • Molecular and morphological characterization of the association between bacterial endosymbionts and the marine nematode Astomonema sp. from the Bahamas
    • Musat N, Giere O, Gieseke A, Thiermann F, Amann R, Dubilier N (2007) Molecular and morphological characterization of the association between bacterial endosymbionts and the marine nematode Astomonema sp. from the Bahamas. Environ Microbiol 9:1345-1353
    • (2007) Environ Microbiol , vol.9 , pp. 1345-1353
    • Musat, N.1    Giere, O.2    Gieseke, A.3    Thiermann, F.4    Amann, R.5    Dubilier, N.6
  • 26
    • 0034043779 scopus 로고    scopus 로고
    • Interkingdom host jumping underground: Phylogenetic analysis of entomoparasitic fungi of the genus Cordyceps
    • Nikoh N, Fukatsu T (2000) Interkingdom host jumping underground: phylogenetic analysis of entomoparasitic fungi of the genus Cordyceps. Mol Biol Evol 17:629-638
    • (2000) Mol Biol Evol , vol.17 , pp. 629-638
    • Nikoh, N.1    Fukatsu, T.2
  • 27
    • 2542427835 scopus 로고    scopus 로고
    • Symbioses between marine nematodes and sulfur-oxidizing chemoautotrophic bacteria
    • Ott J, Bright M, Bulgheresi S (2004) Symbioses between marine nematodes and sulfur-oxidizing chemoautotrophic bacteria. Symbiosis 36:103-126
    • (2004) Symbiosis , vol.36 , pp. 103-126
    • Ott, J.1    Bright, M.2    Bulgheresi, S.3
  • 28
    • 0033997435 scopus 로고    scopus 로고
    • Filamentous fungi associated with holothurians from the Sea of Japan, off the Primorye coast of Russia
    • Pivkin MV (2000) Filamentous fungi associated with holothurians from the Sea of Japan, off the Primorye coast of Russia. Biol Bull 198:101-109
    • (2000) Biol Bull , vol.198 , pp. 101-109
    • Pivkin, M.V.1
  • 29
    • 65549131812 scopus 로고    scopus 로고
    • Platt HM, Warwick RM (1983) Free-living marine nematodes. I. British Enoplids. Cambridge University Press, Cambridge
    • Platt HM, Warwick RM (1983) Free-living marine nematodes. I. British Enoplids. Cambridge University Press, Cambridge
  • 30
    • 65549094886 scopus 로고    scopus 로고
    • Platt HM, Warwick RM (1988) Free-living marine nematodes. II. British Chromadorids. Brill/Backhuys, Leiden
    • Platt HM, Warwick RM (1988) Free-living marine nematodes. II. British Chromadorids. Brill/Backhuys, Leiden
  • 31
    • 0032845644 scopus 로고    scopus 로고
    • Diversity and heterogeneity of epibiotic bacterial communities on the marine nematode Eubostrichus dianae
    • Polz MF, Harbison C, Cavanaugh CM (1998) Diversity and heterogeneity of epibiotic bacterial communities on the marine nematode Eubostrichus dianae. Appl Environ Microbiol 65:4271-4275
    • (1998) Appl Environ Microbiol , vol.65 , pp. 4271-4275
    • Polz, M.F.1    Harbison, C.2    Cavanaugh, C.M.3
  • 32
    • 0042348284 scopus 로고    scopus 로고
    • Diversity and abundance of higher marine fungi on woody substrates along the west coast of India
    • Prasannarai K, Sridhar KR (2001) Diversity and abundance of higher marine fungi on woody substrates along the west coast of India. Curr Sci 81:304-310
    • (2001) Curr Sci , vol.81 , pp. 304-310
    • Prasannarai, K.1    Sridhar, K.R.2
  • 33
    • 33645069944 scopus 로고    scopus 로고
    • Transcriptome analysis of a cnidarian-dinoflagellate mutualism reveals complex modulation of host gene expression
    • Rodriguez-Lanetty M, Phillips WS, Weis VM (2006) Transcriptome analysis of a cnidarian-dinoflagellate mutualism reveals complex modulation of host gene expression. BMC Genomics 7:23
    • (2006) BMC Genomics , vol.7 , pp. 23
    • Rodriguez-Lanetty, M.1    Phillips, W.S.2    Weis, V.M.3
  • 34
    • 0025145868 scopus 로고
    • The partial characterisation of endoproteases and exoproteases from three species of entomopathogenic entomophthorales and two species of deuteromycetes
    • Samuels RI, Charnley AK, St Leger RJ (1990) The partial characterisation of endoproteases and exoproteases from three species of entomopathogenic entomophthorales and two species of deuteromycetes. Mycopathologia 110: 145-152
    • (1990) Mycopathologia , vol.110 , pp. 145-152
    • Samuels, R.I.1    Charnley, A.K.2    St Leger, R.J.3
  • 35
    • 0042678141 scopus 로고    scopus 로고
    • A review on frequently occurring fungi in mangroves
    • Sarma VV, Hyde KD (2001) A review on frequently occurring fungi in mangroves. Fungal Divers 8:1-34
    • (2001) Fungal Divers , vol.8 , pp. 1-34
    • Sarma, V.V.1    Hyde, K.D.2
  • 36
    • 4444297829 scopus 로고    scopus 로고
    • Hirsutella uncinata, a new hyphomycete from Australia
    • Seifert KA, Boulay H (2004) Hirsutella uncinata, a new hyphomycete from Australia. Mycologia 96:929-934
    • (2004) Mycologia , vol.96 , pp. 929-934
    • Seifert, K.A.1    Boulay, H.2
  • 37
    • 0000023099 scopus 로고
    • Attachment of a 40-base-pair G + C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes
    • Sheffield VC, Cox DR, Lerman LS, Myers RM (1989) Attachment of a 40-base-pair G + C-rich sequence (GC-clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes. Proc Natl Acad Sci USA 86:232-236
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 232-236
    • Sheffield, V.C.1    Cox, D.R.2    Lerman, L.S.3    Myers, R.M.4
  • 38
    • 84889373416 scopus 로고    scopus 로고
    • Meiofauna techniques
    • Eleftheriou A, McIntyre AD eds, 3rd edn. Blackwell Science, Oxford, p
    • Somerfield PJ, Warwick RM, Moens T (2005) Meiofauna techniques. In: Eleftheriou A, McIntyre AD (eds) Methods for the study of marine benthos, 3rd edn. Blackwell Science, Oxford, p 229-272
    • (2005) Methods for the study of marine benthos , pp. 229-272
    • Somerfield, P.J.1    Warwick, R.M.2    Moens, T.3
  • 39
    • 65549136067 scopus 로고    scopus 로고
    • Spooner BM, Roberts P (2005) Fungi. The New Naturalist Library, Collins, Romsey
    • Spooner BM, Roberts P (2005) Fungi. The New Naturalist Library, Collins, Romsey
  • 40
    • 21244467534 scopus 로고    scopus 로고
    • Diversity of algal endosymbionts (zooxanthellae) in octocorals: The roles of geography and host relationships
    • Van Oppen MJ, Mieog JC, Sanchez CA, Fabricius KE (2005) Diversity of algal endosymbionts (zooxanthellae) in octocorals: the roles of geography and host relationships. Mol Ecol 14:2403-2417
    • (2005) Mol Ecol , vol.14 , pp. 2403-2417
    • Van Oppen, M.J.1    Mieog, J.C.2    Sanchez, C.A.3    Fabricius, K.E.4
  • 42
    • 0034147555 scopus 로고    scopus 로고
    • Hirsutella rhossiliensis and Verticillium chlamydosporium as biocontrol agents of the root-knot nematode Meloidogyne hapla on lettuce
    • Viaene NM, Abawi GS (2000) Hirsutella rhossiliensis and Verticillium chlamydosporium as biocontrol agents of the root-knot nematode Meloidogyne hapla on lettuce. J Nematol 32:85-100
    • (2000) J Nematol , vol.32 , pp. 85-100
    • Viaene, N.M.1    Abawi, G.S.2
  • 44
    • 39649125308 scopus 로고    scopus 로고
    • Fungal communities of seaweeds
    • Dighton J, White JF Jr, Oudemans P eds, 3rd edn. CRC Press, New York, p
    • Zuccaro A, Mitchell JI (2005) Fungal communities of seaweeds. In: Dighton J, White JF Jr, Oudemans P (eds) The fungal community, 3rd edn. CRC Press, New York, p 533-579
    • (2005) The fungal community , pp. 533-579
    • Zuccaro, A.1    Mitchell, J.I.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.