Crystal structure of a chimeric receptor binding protein constructed from two lactococcal phages

Journal of Bacteriology

Volumn 191, Issue 10, 2009, Pages 3220-3225

  Siponen, Marina ^a   Spinelli, Silvia ^a   Blangy, Stéphanie ^a   Moineau, Sylvain ^b   Cambillau, Christian ^a   Campanacci, Valérie ^a  

^a Centre National de la Recherche Scientifique   (France)

^b UNIVERSITÉ LAVAL   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; GLYCEROL; LINK PROTEIN; RECEPTOR BINDING PROTEIN; UNCLASSIFIED DRUG; HYBRID PROTEIN; PEPTIDE HYDROLASE; VIRUS PROTEIN;

AMINO TERMINAL SEQUENCE; ANIMAL EXPERIMENT; ARTICLE; BACTERIAL STRAIN; BACTERIOPHAGE; BINDING SITE; CARBOXY TERMINAL SEQUENCE; CHIMERA; CRYSTAL STRUCTURE; GENE CONSTRUCT; LACTOCOCCUS; LACTOCOCCUS LACTIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN STABILITY; PROTEIN STRUCTURE; RECEPTOR BINDING; CHEMISTRY; GENETICS; METABOLISM; METHODOLOGY; PROTEIN SECONDARY STRUCTURE; VIROLOGY; X RAY CRYSTALLOGRAPHY;

LACTOCOCCUS LACTIS; POSIBACTERIA;

BACTERIOPHAGES; BINDING SITES; CRYSTALLOGRAPHY, X-RAY; LACTOCOCCUS LACTIS; PEPTIDE HYDROLASES; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT FUSION PROTEINS; VIRAL PROTEINS;

EID: 65549124070     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01637-08     Document Type: Article

References (33)

1. Ackermann, H. W. 2007. 5500 phages examined in the electron microscope. Arch. Virol. 152:227-243.
2. Argos, P., T. Tsukihara, and M. G. Rossmann. 1980. A structural comparison of concanavalin A and tomato bushy stunt virus protein. J. Mol. Evol. 15:169-179.
3. Benson, S. D., J. K. Bamford, D. H. Bamford, and R. M. Burnett. 2004. Does common architecture reveal a viral lineage spanning all three domains of life? Mol. Cell 16:673-685. (Pubitemid 39586527)
4. Benson, S. D., J. K. Bamford, D. H. Bamford, and R. M. Burnett. 1999. Viral evolution revealed by bacteriophage PRD1 and human adenovirus coat protein structures. Cell 98:825-833. (Pubitemid 29446899)
5. Burmeister, W. P., D. Guilligay, S. Cusack, G. Wadell, and N. Arnberg. 2004. Crystal structure of species D adenovirus fiber knobs and their sialic acid binding sites. J. Virol. 78:7727-7736. (Pubitemid 38915919)
6. Chappell, J. D., A. E. Prota, T. S. Dermody, and T. Stehle. 2002. Crystal structure of reovirus attachment protein sigma1 reveals evolutionary relationship to adenovirus fiber. EMBO J. 21:1-11. (Pubitemid 34087069)
7. Collaborative Computational Project, Number 4. 1994. The CCP4 suite: programs for crystallography. Acta Crystallogr. D 50:760-766.
8. De Haard, H. J., S. Bezemer, A. M. Ledeboer, W. H. Muller, P. J. Boender, S. Moineau, M. C. Coppelmans, A. J. Verkleij, L. G. Frenken, and C. T. Verrips. 2005. Llama antibodies against a lactococcal protein located at the tip of the phage tail prevent phage infection. J. Bacteriol. 187:4531-4541. (Pubitemid 40880965)
9. DeLano, W. The PyMOL molecular graphics system (http://www.pymol.org). DeLano Scientific LLC, San Carlos, CA.
10. Deveau, H., S. J. Labrie, M. C. Chopin, and S. Moineau. 2006. Biodiversity and classification of lactococcal phages. Appl. Environ. Microbiol. 72:4338-4346.
11. Deveau, H., M. R. Van Calsteren, and S. Moineau. 2002. Effect of exopolysaccharides on phage-host interactions in Lactococcus lactis. Appl. Environ. Microbiol. 68:4364-4369.
12. Dong, A., X. Xu, A. M. Edwards, C. Chang, M. Chruszcz, M. Cuff, M. Cymborowski, R. Di Leo, O. Egorova, E. Evdokimova, E. Filippova, J. Gu, J. Guthrie, A. Ignatchenko, A. Joachimiak, N. Klostermann, Y. Kim, Y. Korniyenko, W. Minor, Q. Que, A. Savchenko, T. Skarina, K. Tan, A. Yakunin, A. Yee, V. Yim, R. Zhang, H. Zheng, M. Akutsu, C. Arrowsmith, G. V. Avvakumov, A. Bochkarev, L. G. Dahlgren, S. Dhe-Paganon, S. Dimov, L. Dombrovski, P. Finerty, Jr., S. Flodin, A. Flores, S. Graslund, M. Hammerstrom, M. D. Herman, B. S. Hong, R. Hui, I. Johansson, Y. Liu, M. Nilsson, L. Nedyalkova, P. Nordlund, T. Nyman, J. Min, H. Ouyang, H. W. Park, C. Qi, W. Rabeh, L. Shen, Y. Shen, D. Sukumard, W. Tempel, Y. Tong, L. Tresagues, M. Vedadi, J. R. Walker, J. Weigelt, M. Welin, H. Wu, T. Xiao, H. Zeng, and H. Zhu. 2007. In situ proteolysis for protein crystallization and structure determination. Nat. Methods 4:1019-1021.
13. Dupont, K., F. K. Vogensen, H. Neve, J. Bresciani, and J. Josephsen. 2004. Identification of the receptor-binding protein in 936-species lactococcal bacteriophages. Appl. Environ. Microbiol. 70:5818-5824.
14. Emond, E., B. J. Holler, I. Boucher, P. A. Vandenbergh, E. R. Vedamuthu, J. K. Kondo, and S. Moineau. 1997. Phenotypic and genetic characterization of the bacteriophage abortive infection mechanism AbiK from Lactococcus lactis. Appl. Environ. Microbiol. 63:1274-1283. (Pubitemid 27174828)
15. Emond, E., and S. Moineau. 2007. Bacteriophages and food fermentations, p. 93-124. In S. McGrath and D. van Sinderen (ed.), Bacteriophage: genetics and molecular biology. Horizon Scientific Press/Caister Academic Press, Norwich, United Kingdom.
16. Emsley, P., and K. Cowtan. 2004. Coot: model-building tools for molecular graphics. Acta Crystallogr. D 60:2126-2132. (Pubitemid 41742764)
17. Labrie, S. J., J. Josephsen, H. Neve, F. K. Vogensen, and S. Moineau. 2008. Morphology, genome sequence, and structural proteome of type phage P335 from Lactococcus lactis. Appl. Environ. Microbiol. 74:4636-4644.
18. Labrie, S. J., and S. Moineau. 2007. Abortive infection mechanisms and prophage sequences significantly influence the genetic makeup of emerging lytic lactococcal phages. J. Bacteriol. 189:1482-1487. (Pubitemid 46239773)
19. Ledeboer, A. M., S. Bezemer, J. J. de Hiaard, I. M. Schaffers, C. T. Verrips, C. van Vliet, E. M. Dusterhoft, P. Zoon, S. Moineau, and L. G. Frenken. 2002. Preventing phage lysis of Lactococcus lactis in cheese production using a neutralizing heavy-chain antibody fragment from llama. J. Dairy Sci. 85:1376-1382.
20. Long, F., A. A. Vagin, P. Young, and G. N. Murshudov. 2008. BALBES: a molecular-replacement pipeline. Acta Crystallogr. D 64:125-132. (Pubitemid 350308686)
21. Lovell, S. C., I. W. Davis, W. B. Arendall III, P. I. de Bakker, J. M. Word, M. G. Prisant, J. S. Richardson, and D. C. Richardson. 2003. Structure validation by Calpha geometry: phi, psi and Cbeta deviation. Proteins 50:437-450. (Pubitemid 36158457)
22. McCoy, A. J., R. W. Grosse-Kunstleve, L. C. Storoni, and R. J. Read. 2005. Likelihood-enhanced fast translation functions. Acta Crystallogr. D 61:458-464. (Pubitemid 43934606)
23. McGrath, S., H. Neve, J. F. Seegers, R. Eijlander, C. S. Vegge, L. Brondsted, K. J. Heller, G. F. Fitzgerald, F. K. Vogensen, and D. van Sinderen. 2006. Anatomy of a lactococcal phage tail. J. Bacteriol. 188:3972-3982. (Pubitemid 43825402)
24. Moineau, S., M. Borkaev, B. J. Holler, S. A. Walker, J. K. Kondo, E. R. Vedamuthu, and P. A. Vandenbergh. 1996. Isolation and characterization of lactococcal bacteriophages from cultured buttermilk plants in the United States. J. Dairy Sci. 79:2104-2111. (Pubitemid 126429008)
25. Moineau, S., D. Tremblay, and S. Labrie. 2002. Phages of lactic acid bacteria: from genomics to industrial applications. ASM News 68:388-393.
26. Murshudov, G., A. A. Vagin, and E. J. Dodson. 1997. Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr. D 53:240-255. (Pubitemid 27235885)
27. Ricagno, S., V. Campanacci, S. Blangy, S. Spinelli, D. Tremblay, S. Moineau, M. Tegoni, and C. Cambillau. 2006. Crystal structure of the receptor-binding protein head domain from Lactococcus lactis phage bIL170. J. Virol. 80:9331-9335.
28. Sciara, G., S. Blangy, M. Siponen, S. Mc Grath, D. van Sinderen, M. Tegoni, C. Cambillau, and V. Campanacci. 2008. A topological model of the baseplate of lactococcal phage Tuc2009. J. Biol. Chem. 283:2716-2723.
29. Spinelli, S., V. Campanacci, S. Blangy, S. Moineau, M. Tegoni, and C. Cambillau. 2006. Modular structure of the receptor binding proteins of Lactococcus lactis phages. The RBP structure of the temperate phage TP901-1. J. Biol. Chem. 281:14256-14262.
30. Spinelli, S., A. Desmyter, C. T. Verrips, H. J. de Haard, S. Moineau, and C. Cambillau. 2006. Lactococcal bacteriophage p2 receptor-binding protein structure suggests a common ancestor gene with bacterial and mammalian viruses. Nat. Struct. Mol. Biol. 13:85-89.
31. Tremblay, D. M., M. Tegoni, S. Spinelli, V. Campanacci, S. Blangy, C. Huyghe, A. Desmyter, S. Labrie, S. Moineau, and C. Cambillau. 2006. Receptor-binding protein of Lactococcus lactis phages: identification and characterization of the saccharide receptor-binding site. J. Bacteriol. 188:2400-2410.
32. Valyasevi, R., W. E. Sandine, and B. L. Geller. 1990. The bacteriophage kh receptor of Lactococcus lactis subsp. cremoris KH is the rhamnose of the extracellular wall polysaccharide. Appl. Environ. Microbiol. 56:1882-1889.
33. van Raaij, M. J., G. Schoehn, M. R. Burda, and S. Miller. 2001. Crystal structure of a heat and protease-stable part of the bacteriophage T4 short tail fibre. J. Mol. Biol. 314:1137-1146.