메뉴 건너뛰기




Volumn 96, Issue 5, 2009, Pages 1828-1838

Dynamic structure factors from lipid membrane molecular dynamics simulations

Author keywords

[No Author keywords available]

Indexed keywords

ADIABATICITY; ARTICLE; CONTROLLED STUDY; DIFFUSION; ELASTICITY; HYDRODYNAMICS; LIPID MEMBRANE; MEMBRANE STRUCTURE; MOLECULAR DYNAMICS; POWER SPECTRUM; SIMULATION; SOUND; STRUCTURE ANALYSIS; THERMAL ANALYSIS; VELOCITY; ALGORITHM; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; LIPID BILAYER;

EID: 65549120360     PISSN: 00063495     EISSN: 15420086     Source Type: Journal    
DOI: 10.1016/j.bpj.2008.11.044     Document Type: Article
Times cited : (24)

References (47)
  • 1
    • 0037763992 scopus 로고    scopus 로고
    • Collective chain dynamics in lipid bilayers by inelastic x-ray scattering
    • Weiss, T. M., P. -J. Chen, H. Sinn, E. E. Alp, S. -H. Chen, et al. 2003. Collective chain dynamics in lipid bilayers by inelastic x-ray scattering. Biophys. J. 84:3767-3776.
    • (2003) Biophys. J , vol.84 , pp. 3767-3776
    • Weiss, T.M.1    Chen, P.-J.2    Sinn, H.3    Alp, E.E.4    Chen, S.-H.5
  • 3
    • 36048937741 scopus 로고    scopus 로고
    • Short-range order and collective dynamics of DMPC bilayers: A comparison between molecular dynamics simulations, x-ray, and neutron scattering experiments
    • Hub, J. S., T. Salditt, M. C. Rheinstädter, and B. L. de Groot. 2007. Short-range order and collective dynamics of DMPC bilayers: a comparison between molecular dynamics simulations, x-ray, and neutron scattering experiments. Biophys. J. 93:3156-3168.
    • (2007) Biophys. J , vol.93 , pp. 3156-3168
    • Hub, J.S.1    Salditt, T.2    Rheinstädter, M.C.3    de Groot, B.L.4
  • 4
    • 33745506285 scopus 로고    scopus 로고
    • Exploring the collective dynamics of lipid membranes with inelastic neutron scattering
    • Rheinstädter, M. C., T. Seydel, W. Häussler, and T. Salditt. 2006. Exploring the collective dynamics of lipid membranes with inelastic neutron scattering. J. Vac. Sci. Technol. A. 24:1191-1196.
    • (2006) J. Vac. Sci. Technol. A , vol.24 , pp. 1191-1196
    • Rheinstädter, M.C.1    Seydel, T.2    Häussler, W.3    Salditt, T.4
  • 5
    • 0008990220 scopus 로고
    • Brillouin scattering in simple liquids: Argon and neon
    • Fleury, P. A., and J. P. Boon. 1969. Brillouin scattering in simple liquids: argon and neon. Phys. Rev. 186:244-254.
    • (1969) Phys. Rev , vol.186 , pp. 244-254
    • Fleury, P.A.1    Boon, J.P.2
  • 8
    • 22944467757 scopus 로고
    • Computer "experiments" on classical fluids. I. Thermodynamical properties of Lennard-Jones Molecules
    • Verlet, L. 1967. Computer "experiments" on classical fluids. I. Thermodynamical properties of Lennard-Jones Molecules. Phys. Rev. 159:98-103.
    • (1967) Phys. Rev , vol.159 , pp. 98-103
    • Verlet, L.1
  • 9
    • 36049060961 scopus 로고
    • Computer "experiments" on classical fluids. II. Equilibrium correlation functions
    • Verlet, L. 1968. Computer "experiments" on classical fluids. II. Equilibrium correlation functions. Phys. Rev. 165:201-214.
    • (1968) Phys. Rev , vol.165 , pp. 201-214
    • Verlet, L.1
  • 10
    • 0000574986 scopus 로고
    • Computer "experiments" on classical fluids. III. Time-dependent self-correlation functions
    • Levesque, D., and L. Verlet. 1970. Computer "experiments" on classical fluids. III. Time-dependent self-correlation functions. Phys. Rev. A. 2:2514-2528.
    • (1970) Phys. Rev. A , vol.2 , pp. 2514-2528
    • Levesque, D.1    Verlet, L.2
  • 11
    • 0000437817 scopus 로고
    • Computer "experiments" on classical fluids. IV. Transport properties and time-correlation functions of the Lennard-Jones liquid near its triple point
    • Levesque, D., L. Verlet, and J. Kürkijarvi. 1973. Computer "experiments" on classical fluids. IV. Transport properties and time-correlation functions of the Lennard-Jones liquid near its triple point. Phys. Rev. A. 7:1690-1700.
    • (1973) Phys. Rev. A , vol.7 , pp. 1690-1700
    • Levesque, D.1    Verlet, L.2    Kürkijarvi, J.3
  • 12
    • 4243669527 scopus 로고
    • Propagation of density fluctuations in liquid rubidium: A molecular-dynamics study
    • Rahman, A. 1974. Propagation of density fluctuations in liquid rubidium: a molecular-dynamics study. Phys. Rev. Lett. 32:52-54.
    • (1974) Phys. Rev. Lett , vol.32 , pp. 52-54
    • Rahman, A.1
  • 13
    • 0001005809 scopus 로고
    • Density fluctuations in liquid rubidium. II. Molecular-dynamics calculations
    • Rahman, A. 1974. Density fluctuations in liquid rubidium. II. Molecular-dynamics calculations. Phys. Rev. A. 9:1667-1671.
    • (1974) Phys. Rev. A , vol.9 , pp. 1667-1671
    • Rahman, A.1
  • 15
    • 0002182678 scopus 로고
    • Density fluctuations in liquid Argon: Coherent dynamic structure factor along the 120-K isotherm obtained by neutron scattering
    • van Well, A. A., P. Verkerk, L. A. de Graaf, J. -B. Suck, and J. R. D. Copley. 1985. Density fluctuations in liquid Argon: coherent dynamic structure factor along the 120-K isotherm obtained by neutron scattering. Phys. Rev. A. 31:3391-3414.
    • (1985) Phys. Rev. A , vol.31 , pp. 3391-3414
    • van Well, A.A.1    Verkerk, P.2    de Graaf, L.A.3    Suck, J.-B.4    Copley, J.R.D.5
  • 16
    • 45849133767 scopus 로고    scopus 로고
    • Time and length scales in lipid bilayer simulations
    • Chapt. 3 S. Feller, editor. Elsevier, Dordrecht, The Netherlands
    • Edholm, O. 2008. Time and length scales in lipid bilayer simulations. In Current Topics in Membranes., Chapt. 3 S. Feller, editor. Elsevier, Dordrecht, The Netherlands.
    • (2008) Current Topics in Membranes
    • Edholm, O.1
  • 17
    • 33746620160 scopus 로고    scopus 로고
    • Dispersion relation of lipid membrane shape fluctuations by neutron spin-echo spectrometry
    • Rheinstädter, M. C., W. Häussler, and T. Salditt. 2006. Dispersion relation of lipid membrane shape fluctuations by neutron spin-echo spectrometry. Phys. Rev. Lett. 97:048103.
    • (2006) Phys. Rev. Lett , vol.97 , pp. 048103
    • Rheinstädter, M.C.1    Häussler, W.2    Salditt, T.3
  • 18
    • 0141560440 scopus 로고    scopus 로고
    • Studies of short-wavelength collective molecular motions in lipid bilayers using high resolution inelastic x-ray scattering
    • Chen, P. -J.,Y. Liu, T.M.Weiss,H.W.Huang,H. Sinn, et al. 2003. Studies of short-wavelength collective molecular motions in lipid bilayers using high resolution inelastic x-ray scattering. Biophys. Chem. 105:721-741.
    • (2003) Biophys. Chem , vol.105 , pp. 721-741
    • Chen, P.-J.1    Liu, Y.2    Weiss, T.M.3    Huang, H.W.4    Sinn, H.5
  • 19
    • 18844481339 scopus 로고    scopus 로고
    • Short wavelength collective dynamics in phospholipid bilayers: A molecular dynamics study
    • Tarek, M., D. J. Tobias, S.-H. Chen, and M. L. Klein. 2001. Short wavelength collective dynamics in phospholipid bilayers: a molecular dynamics study. Phys. Rev. Lett. 87:238101.
    • (2001) Phys. Rev. Lett , vol.87 , pp. 238101
    • Tarek, M.1    Tobias, D.J.2    Chen, S.-H.3    Klein, M.L.4
  • 20
    • 0007300482 scopus 로고
    • Correlations in space and time and born approximation scattering in systems of interacting particles
    • Van Hove, L. 1954. Correlations in space and time and born approximation scattering in systems of interacting particles. Phys. Rev. 95:249-262.
    • (1954) Phys. Rev , vol.95 , pp. 249-262
    • Van Hove, L.1
  • 21
    • 36049058980 scopus 로고
    • Spectral distribution of scattered light in a simple fluid
    • Mountain, R. D. 1966. Spectral distribution of scattered light in a simple fluid. Rev. Mod. Phys. 38:205-214.
    • (1966) Rev. Mod. Phys , vol.38 , pp. 205-214
    • Mountain, R.D.1
  • 22
    • 35949038427 scopus 로고
    • Transport functions and light scattering in simple dense fluids
    • Boon, J. P., and P. Deguent. 1970. Transport functions and light scattering in simple dense fluids. Phys. Rev. A. 2:2542-2550.
    • (1970) Phys. Rev. A , vol.2 , pp. 2542-2550
    • Boon, J.P.1    Deguent, P.2
  • 24
    • 0030999097 scopus 로고    scopus 로고
    • Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature
    • Berger, O., O. Edholm, and F. Jähnig. 1997. Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature. Biophys. J. 72:2002-2013.
    • (1997) Biophys. J , vol.72 , pp. 2002-2013
    • Berger, O.1    Edholm, O.2    Jähnig, F.3
  • 25
    • 33846823909 scopus 로고
    • Particle mesh Ewald: An Nlog(N) method for Ewald sums in large systems
    • Darden, T., D. York, and L. Pedersen. 1993. Particle mesh Ewald: an Nlog(N) method for Ewald sums in large systems. J. Chem. Phys. 98:10089-10092.
    • (1993) J. Chem. Phys , vol.98 , pp. 10089-10092
    • Darden, T.1    York, D.2    Pedersen, L.3
  • 28
    • 84943502952 scopus 로고
    • A molecular dynamics method for simulations in the canonical ensemble
    • Nosé, S. 1984. A molecular dynamics method for simulations in the canonical ensemble. Mol. Phys. 52:255-268.
    • (1984) Mol. Phys , vol.52 , pp. 255-268
    • Nosé, S.1
  • 29
    • 0001538909 scopus 로고
    • Canonical dynamics: Equilibrium phase-space distributions
    • Hoover, W. G. 1985. Canonical dynamics: equilibrium phase-space distributions. Phys. Rev. A. 31:1695-1697.
    • (1985) Phys. Rev. A , vol.31 , pp. 1695-1697
    • Hoover, W.G.1
  • 30
    • 0019707626 scopus 로고
    • Polymorphic transitions in single crystals: A newmolecular dynamicsmethod
    • Parrinello, M., and A. Rahman. 1981. Polymorphic transitions in single crystals: a newmolecular dynamicsmethod. J.Appl. Phys. 52:7182-7190.
    • (1981) J.Appl. Phys , vol.52 , pp. 7182-7190
    • Parrinello, M.1    Rahman, A.2
  • 31
    • 84926811618 scopus 로고
    • Constant pressure molecular dynamics for molecular systems
    • Nosé, S., and M. L. Klein. 1983. Constant pressure molecular dynamics for molecular systems. Mol. Phys. 50:1055-1076.
    • (1983) Mol. Phys , vol.50 , pp. 1055-1076
    • Nosé, S.1    Klein, M.L.2
  • 32
    • 22144486884 scopus 로고    scopus 로고
    • Structure of fully hydrated fluid phase DMPC and DLPC lipid bilayers using x-ray scattering from oriented multilamellar arrays and from unilamellar vesicles
    • Kucerka, N., Y. Liu, N. Chu, H. I. Petrache, S. Tristram-Nagle, et al. 2005. Structure of fully hydrated fluid phase DMPC and DLPC lipid bilayers using x-ray scattering from oriented multilamellar arrays and from unilamellar vesicles. Biophys. J. 88:2626-2637.
    • (2005) Biophys. J , vol.88 , pp. 2626-2637
    • Kucerka, N.1    Liu, Y.2    Chu, N.3    Petrache, H.I.4    Tristram-Nagle, S.5
  • 34
    • 0000835532 scopus 로고
    • X-ray structural studies of freely suspended ordered hydrated DMPC multimembrane films
    • Smith, G. S., E. B. Sirota, C. R. Safinya, R. J. Plano, and N. A. Clark. 1990. X-ray structural studies of freely suspended ordered hydrated DMPC multimembrane films. J. Chem. Phys. 92:4519-4529.
    • (1990) J. Chem. Phys , vol.92 , pp. 4519-4529
    • Smith, G.S.1    Sirota, E.B.2    Safinya, C.R.3    Plano, R.J.4    Clark, N.A.5
  • 35
    • 20744449792 scopus 로고    scopus 로고
    • The design and implementation of FFTW3
    • Frigo, M., and S. Johnson. 2005. The design and implementation of FFTW3. Proc. IEEE. 93:216-231.
    • (2005) Proc. IEEE , vol.93 , pp. 216-231
    • Frigo, M.1    Johnson, S.2
  • 36
    • 0000873069 scopus 로고
    • A method for the solution of certain non-linear problems in least square
    • Levenberg, K. 1944. A method for the solution of certain non-linear problems in least square. Q. Appl. Math. 2:164-168.
    • (1944) Q. Appl. Math , vol.2 , pp. 164-168
    • Levenberg, K.1
  • 37
    • 0000169232 scopus 로고
    • An algorithm for least-squares estimation of nonlinear parameters
    • Marquardt, D. 1963. An algorithm for least-squares estimation of nonlinear parameters. SIAM J. Appl. Math. 11:431-441.
    • (1963) SIAM J. Appl. Math , vol.11 , pp. 431-441
    • Marquardt, D.1
  • 38
    • 0000838011 scopus 로고
    • Liquid dynamics and inelastic scattering of neutrons
    • De Gennes, P. G. 1959. Liquid dynamics and inelastic scattering of neutrons. Physica. 25:825-839.
    • (1959) Physica , vol.25 , pp. 825-839
    • De Gennes, P.G.1
  • 39
    • 0026068896 scopus 로고
    • Quasielastic neutron scattering measurements of fast local translational diffusion of lipid molecules in phospholipid bilayers
    • Tabony, J., and B. Perly. 1991. Quasielastic neutron scattering measurements of fast local translational diffusion of lipid molecules in phospholipid bilayers. Biochim. Biophys. Acta. Biomembr. 1063:67-72.
    • (1991) Biochim. Biophys. Acta. Biomembr , vol.1063 , pp. 67-72
    • Tabony, J.1    Perly, B.2
  • 40
    • 0018192656 scopus 로고
    • Brillouin light scattering measurement of the elastic properties of aligned multilamellar lipid samples
    • LePesant, J. -P., L. Powers, and P. S. Pershan. 1978. Brillouin light scattering measurement of the elastic properties of aligned multilamellar lipid samples. Proc. Natl. Acad. Sci. USA. 75:1792-1795.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 1792-1795
    • LePesant, J.-P.1    Powers, L.2    Pershan, P.S.3
  • 41
    • 33645060215 scopus 로고    scopus 로고
    • Brillouin scattering of lipid membranes
    • Manglkammer, W., and J. Krüger. 2005. Brillouin scattering of lipid membranes. J. Phys. IV (Fr). 129:65-67.
    • (2005) J. Phys. IV (Fr) , vol.129 , pp. 65-67
    • Manglkammer, W.1    Krüger, J.2
  • 42
    • 0032449839 scopus 로고    scopus 로고
    • Mechanical aspects of membrane thermodynamics. Estimation of the mechanical properties of lipid membranes close to the chain melting transition from calorimetry
    • Heimburg, T. 1998. Mechanical aspects of membrane thermodynamics. Estimation of the mechanical properties of lipid membranes close to the chain melting transition from calorimetry. Biochim. Biophys. Acta. 1415:147-162.
    • (1998) Biochim. Biophys. Acta , vol.1415 , pp. 147-162
    • Heimburg, T.1
  • 43
    • 33846388187 scopus 로고    scopus 로고
    • Nanosecond molecular relaxations in lipid bilayers studied by high energy-resolution neutron scattering and in situ diffraction
    • Rheinstädter, M. C., T. Seydel, and T. Salditt. 2007. Nanosecond molecular relaxations in lipid bilayers studied by high energy-resolution neutron scattering and in situ diffraction. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 75:011907.
    • (2007) Phys. Rev. E Stat. Nonlin. Soft Matter Phys , vol.75 , pp. 011907
    • Rheinstädter, M.C.1    Seydel, T.2    Salditt, T.3
  • 44
    • 0001191878 scopus 로고
    • Computation and analysis of the dynamic structure factor S(k, u) for small wave vectors
    • Schoen, M., R. Vogelsang, and C. Hoheisel. 1986. Computation and analysis of the dynamic structure factor S(k, u) for small wave vectors. Mol. Phys. 57:445-471.
    • (1986) Mol. Phys , vol.57 , pp. 445-471
    • Schoen, M.1    Vogelsang, R.2    Hoheisel, C.3
  • 45
    • 0000726453 scopus 로고
    • The structure of undisplaced scattered lines
    • Landau, L., and G. Placzek. 1934. The structure of undisplaced scattered lines. Physik Z. Sowjetunion. 5:172.
    • (1934) Physik Z. Sowjetunion , vol.5 , pp. 172
    • Landau, L.1    Placzek, G.2
  • 47
    • 4243149555 scopus 로고
    • Very-short-wavelength collective modes in fluids
    • de Schepper, I. M., and E. G. D. Cohen. 1982. Very-short-wavelength collective modes in fluids. J. Stat. Phys. 27:223-281.
    • (1982) J. Stat. Phys , vol.27 , pp. 223-281
    • de Schepper, I.M.1    Cohen, E.G.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.