-
1
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R. and Mann, M. (2003) ‘Mass spectrometry-based proteomics’, Nature, Vol. 422, pp.198–207.
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
2
-
-
24744455665
-
Automatic quality assessment of peptide tandem mass spectra
-
Bern, M., Goldberg, D., McDonald, W.H. and Yates, J.R. (2004) ‘Automatic quality assessment of peptide tandem mass spectra’, Bioinformatics, Vol. S1, pp.i49–i54.
-
(2004)
Bioinformatics
, vol.S1
, pp. i49-i54
-
-
Bern, M.1
Goldberg, D.2
McDonald, W.H.3
Yates, J.R.4
-
3
-
-
0033948589
-
Automatic Poisson peaking harvesting for high throughput protein identification
-
Breen, E.J., Hophood, F.G., Williams, K.L. and Wilkins, M.R. (2000) ‘Automatic Poisson peaking harvesting for high throughput protein identification’, Electrophoresis, Vol. 21, pp.2243–2251.
-
(2000)
Electrophoresis
, vol.21
, pp. 2243-2251
-
-
Breen, E.J.1
Hophood, F.G.2
Williams, K.L.3
Wilkins, M.R.4
-
5
-
-
33748659203
-
Improved peak detection in mass spectrum by incorporating continues wavelet transform-based pattern matching
-
Du, P., Kibbe, W.A. and Lin, S.M. (2006) ‘Improved peak detection in mass spectrum by incorporating continues wavelet transform-based pattern matching’, Bioinformatics, Vol. 22, pp.2059–2065.
-
(2006)
Bioinformatics
, vol.22
, pp. 2059-2065
-
-
Du, P.1
Kibbe, W.A.2
Lin, S.M.3
-
6
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequence in a protein database
-
Eng, K.J., McCormack, A.L. and Yates, J.R. (1994) ‘An approach to correlate tandem mass spectral data of peptides with amino acid sequence in a protein database’, J. Am. Soc. Mass Spectrom, Vol. 5, pp.976–989.
-
(1994)
J. Am. Soc. Mass Spectrom
, vol.5
, pp. 976-989
-
-
Eng, K.J.1
McCormack, A.L.2
Yates, J.R.3
-
7
-
-
0036211823
-
RADARS, a bioinformatics solution that automates proteome mass spectral analysis, optimizes protein identification, and archives data in a relation database
-
Field, H.I., Fenyö, D. and Beavis, R.C. (2002) ‘RADARS, a bioinformatics solution that automates proteome mass spectral analysis, optimizes protein identification, and archives data in a relation database’, Proteomics, Vol. 2, pp.36–47.
-
(2002)
Proteomics
, vol.2
, pp. 36-47
-
-
Field, H.I.1
Fenyö, D.2
Beavis, R.C.3
-
8
-
-
13844319908
-
PepNovo: De Novo peptide sequencing via probabilistic network modeling
-
Frank, A. and Pevzner, P. (2005) ‘PepNovo: De Novo peptide sequencing via probabilistic network modeling’, Analytical Chemistry, Vol. 77, pp.964–973.
-
(2005)
Analytical Chemistry
, vol.77
, pp. 964-973
-
-
Frank, A.1
Pevzner, P.2
-
9
-
-
0345414073
-
Mean shift based clustering in high dimensions: a texture classification example
-
Georgescu, B., Shimshoni, I. and Meer, P. (2003) ‘Mean shift based clustering in high dimensions: a texture classification example’, Ninth IEEE International Conference on Computer Vision (ICCV’03), Vol. 1, pp.456–463.
-
(2003)
Ninth IEEE International Conference on Computer Vision (ICCV’03)
, vol.1
, pp. 456-463
-
-
Georgescu, B.1
Shimshoni, I.2
Meer, P.3
-
10
-
-
0036406762
-
Experimental protein mixture for validating tandem mass spectral analysis
-
Keller, A., Purvine, S., Nesvizhskii, A.I., Stolyar, S., Goodlett, D.R. and Kolker E. (2002) ‘Experimental protein mixture for validating tandem mass spectral analysis’, OMICS, Vol. 6, pp.207–212.
-
(2002)
OMICS
, vol.6
, pp. 207-212
-
-
Keller, A.1
Purvine, S.2
Nesvizhskii, A.I.3
Stolyar, S.4
Goodlett, D.R.5
Kolker, E.6
-
12
-
-
0141989734
-
Peaks: powerful software for peptide de novo sequencing by tandem mass spectrometry
-
Ma, B., Zhang, K., Hendrie, C., Liang, C., Li, M., Doherty-Kirby, A. and Lajoie, G. (2003) ‘Peaks: powerful software for peptide de novo sequencing by tandem mass spectrometry’, Rapid Communication in Mass Spectrometry, Vol. 17, pp.337–2342.
-
(2003)
Rapid Communication in Mass Spectrometry
, vol.17
, pp. 337-2342
-
-
Ma, B.1
Zhang, K.2
Hendrie, C.3
Liang, C.4
Li, M.5
Doherty-Kirby, A.6
Lajoie, G.7
-
13
-
-
33645708138
-
Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data
-
Nesvizhskii, A.I., Roos, F.F., Grossmann, J., Vogelzang, M., Eddes, J.S., Gruissem, W., Baginsky, S. and Aebersild, R. (2006) ‘Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data’, Journal of Proteome Research, Vol. 5, pp.652–670.
-
(2006)
Journal of Proteome Research
, vol.5
, pp. 652-670
-
-
Nesvizhskii, A.I.1
Roos, F.F.2
Grossmann, J.3
Vogelzang, M.4
Eddes, J.S.5
Gruissem, W.6
Baginsky, S.7
Aebersild, R.8
-
14
-
-
0033434080
-
Probability-based protein identification by searching sequence database using mass spectrometry data
-
Perkins, D.N., Pappin, D.J., Creasy, D.M. and Cottrell, J.S. (1999) ‘Probability-based protein identification by searching sequence database using mass spectrometry data’, Electrophoresis, Vol. 20, pp.3551–3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
15
-
-
7044263254
-
Spectral quality assessment for high-throughput tandem mass spectrometry proteomics
-
Purvine, S., Kolker, N. and Kolker, E. (2004) ‘Spectral quality assessment for high-throughput tandem mass spectrometry proteomics’, OMICS, Vol. 8, pp. 255–265.
-
(2004)
OMICS
, vol.8
, pp. 255-265
-
-
Purvine, S.1
Kolker, N.2
Kolker, E.3
-
17
-
-
0036589948
-
Code developments to improve the efficiency of automated MS/MS spectra interpretation
-
Sadygov, R., Eng, J., Durr, E., Saraf, A., McDonald, H., MacCoss, M.J. and Yates, J.R. (2002) ‘Code developments to improve the efficiency of automated MS/MS spectra interpretation’, J. Proteome Res., Vol. 1, pp.211–215.
-
(2002)
J. Proteome Res.
, vol.1
, pp. 211-215
-
-
Sadygov, R.1
Eng, J.2
Durr, E.3
Saraf, A.4
McDonald, H.5
MacCoss, M.J.6
Yates, J.R.7
-
18
-
-
0000685292
-
Protein identification by SEQUEST
-
James, P. (Ed.) Springer, Berlin
-
Tabb, D.L., Eng, J.K. and Yates, J.R. (2000) ‘Protein identification by SEQUEST’, in James, P. (Ed.): Proteome Research: Mass Spectrometry (Principles and Practice), Springer, Berlin, pp.125–142.
-
(2000)
Proteome Research: Mass Spectrometry (Principles and Practice)
, pp. 125-142
-
-
Tabb, D.L.1
Eng, J.K.2
Yates, J.R.3
-
19
-
-
0027576716
-
Morphological grayscale reconstruction in image analysis: application and efficient algorithm
-
Vincent, L. (1993) ‘Morphological grayscale reconstruction in image analysis: application and efficient algorithm’, IEEE Transaction on Image Processing, Vol. 2, pp.176–201.
-
(1993)
IEEE Transaction on Image Processing
, vol.2
, pp. 176-201
-
-
Vincent, L.1
-
20
-
-
33847654762
-
msmsEval: tandem mass spectral quality assignment for high throughput proteomics
-
Wong, J.W., Sullivan, M.J., Cartwright, H.M. and Gsgmru, G. (2007) ‘msmsEval: tandem mass spectral quality assignment for high throughput proteomics’, BMC Bioinformatics, Vol. 8, 51.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 51
-
-
Wong, J.W.1
Sullivan, M.J.2
Cartwright, H.M.3
Gsgmru, G.4
-
21
-
-
47249084271
-
Quality assessment of peptide tandem mass spectra
-
Wu, F.X., Gagne, P., Droit, A. and Poirier, G.G. (2008) ‘Quality assessment of peptide tandem mass spectra’, BMC Bioinformatics, Vol. 9 (Suppl: 6), p.S13.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. S13
-
-
Wu, F.X.1
Gagne, P.2
Droit, A.3
Poirier, G.G.4
-
22
-
-
17444423714
-
Assessing data quality of peptide mass spectra obtained by quadrupole ion trap mass spectrometry
-
Xu, M., Geer, L.Y., Bryant, S.H., Roth, J.S., Kowalak, J.A., Maynard, D.M. and Markey, S.P. (2005) ‘Assessing data quality of peptide mass spectra obtained by quadrupole ion trap mass spectrometry’, Journal of Proteome Research, Vol. 4, 300–305.
-
(2005)
Journal of Proteome Research
, vol.4
, pp. 300-305
-
-
Xu, M.1
Geer, L.Y.2
Bryant, S.H.3
Roth, J.S.4
Kowalak, J.A.5
Maynard, D.M.6
Markey, S.P.7
-
23
-
-
84950306448
-
-
http://people.revoledu.com/kardi/tutorial/LDA/LDA.html
-
-
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