Plant peptides in signalling: looking for new partners

Trends in Plant Science

Volumn 14, Issue 5, 2009, Pages 255-263

  Butenko, Melinka A ^a   Vie, Ane Kjersti ^b   Brembu, Tore ^b   Aalen, Reidunn B ^a   Bones, Atle M ^b  

^a UNIVERSITY OF OSLO   (Norway)

^b NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; CLV3 PROTEIN, ARABIDOPSIS; IDA PROTEIN, ARABIDOPSIS; PEPTIDE; PROTEIN SERINE THREONINE KINASE; RLK5 PROTEIN, ARABIDOPSIS;

ARTICLE; BIOLOGICAL MODEL; CLASSIFICATION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PHYLOGENY; PHYSIOLOGY; SIGNAL TRANSDUCTION;

ARABIDOPSIS PROTEINS; GENE EXPRESSION REGULATION, PLANT; MODELS, BIOLOGICAL; PEPTIDES; PHYLOGENY; PROTEIN-SERINE-THREONINE KINASES; SIGNAL TRANSDUCTION;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 65449140371     PISSN: 13601385     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tplants.2009.02.002     Document Type: Article

References (77)

1. Pearce G., et al. A polypeptide from tomato leaves induces wound-inducible proteinase inhibitor proteins. Science 253 (1991) 895-897
2. Shiu S.H., and Bleecker A.B. Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 10763-10768
3. Lease K.A., and Walker J.C. The Arabidopsis unannotated secreted peptide database, a resource for plant peptidomics. Plant Physiol. 142 (2006) 831-838
4. Cho S.K., et al. Regulation of floral organ abscission in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U. S. A. 105 (2008) 15629-15634
5. Stenvik G.E., et al. The EPIP peptide of INFLORESCENCE DEFICIENT IN ABSCISSION is sufficient to induce abscission in Arabidopsis through the receptor-like kinases HAESA and HAESA-LIKE2. Plant Cell 20 (2008) 1805-1817
6. Butenko M.A., et al. INFLORESCENCE DEFICIENT IN ABSCISSION controls floral organ abscission in Arabidopsis and identifies a novel family of putative ligands in plants. Plant Cell 15 (2003) 2296-2307
7. Cock J.M., and McCormick S. A large family of genes that share homology with CLAVATA3. Plant Physiol. 126 (2001) 939-942
8. Jun J.H., et al. The CLE family of plant polypeptide signaling molecules. Cell. Mol. Life Sci. 65 (2008) 743-755
9. Ni J., and Clark S.E. Evidence for functional conservation, sufficiency and proteolytic processing of the CLAVATA3 CLE domain. Plant Physiol. 140 (2006) 726-733
10. Deyoung B.J., and Clark S.E. BAM receptors regulate stem cell specification and organ development through complex interactions with CLAVATA signaling. Genetics 180 (2008) 895-904
11. Matsubayashi Y., and Sakagami Y. Peptide hormones in plants. Annu. Rev. Plant Biol. 57 (2006) 649-674
12. Ryan C.A., et al. New insights into innate immunity in Arabidopsis. Cell. Microbiol. 9 (2007) 1902-1908
13. McGurl B., et al. Structure, expression, and antisense inhibition of the systemin precursor gene. Science 255 (1992) 1570-1573
14. Narvaez-Vasquez J., et al. The plant cell wall matrix harbors a precursor of defense signaling peptides. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 12974-12977
15. Pearce G., et al. Production of multiple plant hormones from a single polyprotein precursor. Nature 411 (2001) 817-820
16. Yang H., et al. Oryza sativa PSK gene encodes a precursor of phytosulfokine-α, a sulfated peptide growth factor found in plants. Proc. Natl. Acad. Sci. U. S. A. 96 (1999) 13560-13565
17. Amano Y., et al. Tyrosine-sulfated glycopeptide involved in cellular proliferation and expansion in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 18333-18338
18. Ito Y., et al. Dodeca-CLE peptides as suppressors of plant stem cell differentiation. Science 313 (2006) 842-845
19. Kondo T., et al. A plant peptide encoded by CLV3 identified by in situ MALDI-TOF MS analysis. Science 313 (2006) 845-848
20. Huffaker A., et al. An endogenous peptide signal in Arabidopsis activates components of the innate immune response. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 10098-10103
21. Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408 (2000) 796-815
22. Hobe M., et al. Loss of CLE40, a protein functionally equivalent to the stem cell restricting signal CLV3, enhances root waving in Arabidopsis. Dev. Genes Evol. 213 (2003) 371-381
23. Sharma V.K., et al. The Arabidopsis CLV3-like (CLE) genes are expressed in diverse tissues and encode secreted proteins. Plant Mol. Biol. 51 (2003) 415-425
24. Hanada K., et al. A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection. Genome Res. 17 (2007) 632-640
25. Matsubayashi Y., and Sakagami Y. Phytosulfokine, sulfated peptides that induce the proliferation of single mesophyll cells of Asparagus officinalis L. Proc. Natl. Acad. Sci. U. S. A. 93 (1996) 7623-7627
26. Beers E.P., et al. The S8 serine, C1A cysteine and A1 aspartic protease families in Arabidopsis. Phytochemistry 65 (2004) 43-58
27. Srivastava R., et al. Proteolytic processing of a precursor protein for a growth-promoting peptide by a subtilisin serine protease in Arabidopsis. Plant J. 56 (2008) 219-227
28. Casamitjana-Martinez E., et al. Root-specific CLE19 overexpression and the sol1/2 suppressors implicate a CLV-like pathway in the control of Arabidopsis root meristem maintenance. Curr. Biol. 13 (2003) 1435-1441
29. Li J., et al. BRS1, a serine carboxypeptidase, regulates BRI1 signaling in Arabidopsis thaliana. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 5916-5921
30. Zhou A., and Li J. Arabidopsis BRS1 is a secreted and active serine carboxypeptidase. J. Biol. Chem. 280 (2005) 35554-35561
31. Berger D., and Altmann T. A subtilisin-like serine protease involved in the regulation of stomatal density and distribution in Arabidopsis thaliana. Genes Dev. 14 (2000) 1119-1131
32. Tanaka H., et al. A subtilisin-like serine protease is required for epidermal surface formation in Arabidopsis embryos and juvenile plants. Development 128 (2001) 4681-4689
33. Hara K., et al. The secretory peptide gene EPF1 enforces the stomatal one-cell-spacing rule. Genes Dev. 21 (2007) 1720-1725
34. Tanaka H., et al. Novel receptor-like kinase ALE2 controls shoot development by specifying epidermis in Arabidopsis. Development 134 (2007) 1643-1652
35. Kinoshita A., et al. Gain-of-function phenotypes of chemically synthetic CLAVATA3/ESR-related (CLE) peptides in Arabidopsis thaliana and Oryza sativa. Plant Cell Physiol. 48 (2007) 1821-1825
36. Ohyama K., et al. Identification of a biologically active, small, secreted peptide in Arabidopsis by in silico gene screening, followed by LC-MS-based structure analysis. Plant J. 55 (2008) 152-160
37. Fiers M., et al. The 14-amino acid CLV3, CLE19, and CLE40 peptides trigger consumption of the root meristem in Arabidopsis through a CLAVATA2-dependent pathway. Plant Cell 17 (2005) 2542-2553
38. Montoya T., et al. Cloning the tomato curl3 gene highlights the putative dual role of the leucine-rich repeat receptor kinase tBRI1/SR160 in plant steroid hormone and peptide hormone signaling. Plant Cell 14 (2002) 3163-3176
39. Scheer J.M., and Ryan C.A. The systemin receptor SR160 from Lycopersicon peruvianum is a member of the LRR receptor kinase family. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 9585-9590
40. Holton N., et al. Tomato BRASSINOSTEROID INSENSITIVE1 is required for systemin-induced root elongation in Solanum pimpinellifolium but is not essential for wound signaling. Plant Cell 19 (2007) 1709-1717
41. Yamaguchi Y., et al. The cell surface leucine-rich repeat receptor for AtPep1, an endogenous peptide elicitor in Arabidopsis, is functional in transgenic tobacco cells. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 10104-10109
42. Kondo T., et al. Dual assay for MCLV3 activity reveals structure-activity relationship of CLE peptides. Biochem. Biophys. Res. Commun. 377 (2008) 312-316
43. Hirakawa Y., et al. Non-cell-autonomous control of vascular stem cell fate by a CLE peptide/receptor system. Proc. Natl. Acad. Sci. U. S. A. 105 (2008) 15208-15213
44. Fisher K., and Turner S. PXY, a receptor-like kinase essential for maintaining polarity during plant vascular-tissue development. Curr. Biol. 17 (2007) 1061-1066
45. Shinohara H., and Matsubayashi Y. Functional immobilization of plant receptor-like kinase onto microbeads towards receptor array construction and receptor-based ligand fishing. Plant J. 52 (2007) 175-184
46. Jinn T.-L., et al. HAESA, an Arabidopsis leucine-rich repeat receptor kinase, controls floral organ abscission. Genes Dev. 14 (2000) 108-117
47. Stenvik G.E., et al. Overexpression of INFLORESCENCE DEFICIENT IN ABSCISSION activates cell separation in vestigial abscission zones in Arabidopsis. Plant Cell 18 (2006) 1467-1476
48. Trotochaud A.E., et al. The CLAVATA1 receptor-like kinase requires CLAVATA3 for its assembly into a signaling complex that includes KAPP and a Rho-related protein. Plant Cell 11 (1999) 393-406
49. Miwa H., et al. The receptor-like kinase SOL2 mediates CLE signaling in Arabidopsis. Plant Cell Physiol. 49 (2008) 1752-1757
50. Muller R., et al. The receptor kinase CORYNE of Arabidopsis transmits the stem cell-limiting signal CLAVATA3 independently of CLAVATA1. Plant Cell 20 (2008) 934-946
51. Gray J.E., et al. Intercellular peptide signals regulate plant meristematic cell fate decisions. Sci. Signal. 1 (2008) pe53
52. Stone J.M., et al. Interaction of a protein phosphatase with an Arabidopsis serine-threonine receptor kinase. Science 266 (1994) 793-795
53. DeYoung B.J., et al. The CLAVATA1-related BAM1, BAM2 and BAM3 receptor kinase-like proteins are required for meristem function in Arabidopsis. Plant J. 45 (2006) 1-16
54. Hord C.L., et al. The BAM1/BAM2 receptor-like kinases are important regulators of Arabidopsis early anther development. Plant Cell 18 (2006) 1667-1680
55. Cano-Delgado A., et al. BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis. Development 131 (2004) 5341-5351
56. Craigon D.J., et al. NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res. 32 (2004) D575-D577
57. Barrett T., et al. NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res. 37 (2008) D885-D890
58. Parkinson H., et al. ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Res. 33 (2005) D553-D555
59. Zimmermann P., et al. GENEVESTIGATOR. Arabidopsis Microarray Database and Analysis Toolbox. Plant Physiol 136 (2004) 2621-2632
60. Thimm O., et al. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 37 (2004) 914-939
61. Toufighi K., et al. The botany array resource: e-Northerns, expression angling, and promoter analyses. Plant J. 43 (2005) 153-163
62. Obayashi T., et al. ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res. 37 (2008) D987-D991
63. Srinivasasainagendra V., et al. CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol. 147 (2008) 1004-1016
64. Mutwil M., et al. GeneCAT - novel webtools that combine BLAST and co-expression analyses. Nucleic Acids Res. 36 (2008) W320-W326
65. Yang S.L., et al. TAPETUM DETERMINANT1 is required for cell specialization in the Arabidopsis anther. Plant Cell 15 (2003) 2792-2804
66. Huffaker A., and Ryan C.A. Endogenous peptide defense signals in Arabidopsis differentially amplify signaling for the innate immune response. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 10732-10736
67. Mishima M., et al. Structure of the male determinant factor for Brassica self-incompatibility. J. Biol. Chem. 278 (2003) 36389-36395
68. Vanoosthuyse V., et al. Two large Arabidopsis thaliana gene families are homologous to the Brassica gene superfamily that encodes pollen coat proteins and the male component of the self-incompatibility response. Plant Mol. Biol. 46 (2001) 17-34
69. Scheer J.M., and Ryan Jr. C.A. The systemin receptor SR160 from Lycopersicon peruvianum is a member of the LRR receptor kinase family. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 9585-9590
70. Yang H., et al. Diversity of Arabidopsis genes encoding precursors for phytosulfokine, a peptide growth factor. Plant Physiol. 127 (2001) 842-851
71. Casson S.A., et al. The POLARIS gene of Arabidopsis encodes a predicted peptide required for correct root growth and leaf vascular patterning. Plant Cell 14 (2002) 1705-1721
72. Topping J.F., and Lindsey K. Promoter trap markers differentiate structural and positional components of polar development in Arabidopsis. Plant Cell 9 (1997) 1713-1725
73. Narita N.N., et al. Overexpression of a novel small peptide ROTUNDIFOLIA4 decreases cell proliferation and alters leaf shape in Arabidopsis thaliana. Plant J. 38 (2004) 699-713
74. Olsen A.N., et al. Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs. In Silico Biol. 2 (2002) 441-451
75. Charon C., et al. enod40 induces dedifferentiation and division of root cortical cells and legumes. Proc. Natl. Acad. Sci. U. S. A. 94 (1997) 8901-8906
76. Gultyaev A.P., and Roussis A. Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants. Nucleic Acids Res. 35 (2007) 3144-3152
77. Röhrig H., et al. Soybean ENOD40 encodes two peptides that bind to sucrose synthase. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 1915-1920