GeNGe: Systematic generation of gene regulatory networks

Bioinformatics

Volumn 25, Issue 9, 2009, Pages 1205-1207

  Hache, Hendrik ^a   Wierling, Christoph ^a   Lehrach, Hans ^a   Herwig, Ralf ^a  

^a MAX PLANCK INSTITUTE FOR MOLECULAR GENETICS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AUTOMATION; BIOINFORMATICS; COMPUTER PREDICTION; COMPUTER PROGRAM; COMPUTER SIMULATION; GENE REGULATORY NETWORK; NONHUMAN; PRIORITY JOURNAL; PROCESS DEVELOPMENT; THEORETICAL MODEL;

COMPUTATIONAL BIOLOGY; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORKS; INTERNET; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 65449134730     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp115     Document Type: Article

References (10)

1. Barabási,A.-L. and Oltvai,Z.N. (2004) Network biology: Understanding the cell's functional organization. Nat. Rev. Genet, 5, 101-113.
2. Bollobás,B. et al. (2003) Directed scale-free graphs. In SODA'03: Proceedings of the fourteenth annual ACM-SIAM symposium on Discrete algorithms. Society for Industrial and Applied Mathematics, Philadelphia, PA, USA, pp. 132-139.
3. Davidson,E.H. et al. (2002) A genomic regulatory network for development. Science, 295, 1669-1678.
4. den Bulcke,T.V. et al. (2006) Syntren: A generator of synthetic gene expression data for design and analysis of structure learning algorithms. BMC Bioinformatics, 7, 43.
5. Elowitz,M.B. and Leibler,S. (2000) A synthetic oscillatory network of transcriptional regulators. Nature, 403, 335-338.
6. Hill,A.D. et al. (2008) Synbioss: The synthetic biology modeling suite. Bioinformatics, 24, 2551-2553.
7. Lee,T.I. et al. (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science, 298, 799-804.
8. Roy,S. et al. (2008) A system for generating transcription regulatory networks with combinatorial control of transcription. Bioinformatics, 24, 1318-1320.
9. Schilstra,M.J. and Nehaniv,C.L. (2008) Bio-logic: Gene expression and the laws of combinatorial logic. Art. Life, 14, 121-133.
10. Wierling,C. et al. (2007) Resources, standards and tools for systems biology. Brief. Funct. Genomic Proteomic, 6, 240-251.