-
3
-
-
0035003178
-
A graph layout algorithm for drawing metabolic pathways
-
10.1093/bioinformatics/17.5.461 11331241
-
Becker MY Rojas I A graph layout algorithm for drawing metabolic pathways Bioinformatics 2001, 17(5):461-467. 10.1093/bioinformatics/ 17.5.461 11331241
-
(2001)
Bioinformatics
, vol.17
, Issue.5
, pp. 461-467
-
-
Becker, M.Y.1
Rojas, I.2
-
6
-
-
0001070640
-
A heuristic for graph drawing
-
Eades P A heuristic for graph drawing Congressus Numerantium 1984, 42:149-160.
-
(1984)
Congressus Numerantium
, vol.42
, pp. 149-160
-
-
Eades, P.1
-
8
-
-
84905389375
-
A constrained, force-directed layout algorithm for biological pathways
-
Genc B Dogrusoz U A constrained, force-directed layout algorithm for biological pathways Graph Drawing 2003 2003, 314-319.
-
(2003)
Graph Drawing 2003
, pp. 314-319
-
-
Genc, B.1
Dogrusoz, U.2
-
9
-
-
18744387729
-
A grid layout algorithm for automatic drawing of biochemical networks
-
10.1093/bioinformatics/bti290 15677705
-
Li W Kurata H A grid layout algorithm for automatic drawing of biochemical networks Bioinformatics 2005, 21(9):2036-2042. 10.1093/ bioinformatics/bti290 15677705
-
(2005)
Bioinformatics
, vol.21
, Issue.9
, pp. 2036-2042
-
-
Li, W.1
Kurata, H.2
-
10
-
-
33947388382
-
An efficient grid layout algorithm for biological networks utilizing various biological attributes
-
1821340 17338825
-
Kojima K Nagasaki M Euna J Miyano S An efficient grid layout algorithm for biological networks utilizing various biological attributes BMC Bioinformatics 2007, 8:76. 1821340 17338825
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 76
-
-
Kojima, K.1
Nagasaki, M.2
Euna, J.3
Miyano, S.4
-
11
-
-
33845357608
-
An Algorithm for Modularity Analysis of Directed and Weighted Biological Networks Based on Edge-Betweenness Centrality
-
10.1093/bioinformatics/btl533 17060356
-
Yoon J Blumer A Lee K An Algorithm for Modularity Analysis of Directed and Weighted Biological Networks Based on Edge-Betweenness Centrality Bioinformatics 2006, 22:3106-3108. 10.1093/bioinformatics/btl533 17060356
-
(2006)
Bioinformatics
, vol.22
, pp. 3106-3108
-
-
Yoon, J.1
Blumer, A.2
Lee, K.3
-
13
-
-
45449113970
-
Fast grid layout algorithm for biological networks with sweep calculation
-
10.1093/bioinformatics/btn196 18424458
-
Kojima K Nagasaki M Miyano S Fast grid layout algorithm for biological networks with sweep calculation Bioinformatics 2008, 24:1433-41. 10.1093/ bioinformatics/btn196 18424458
-
(2008)
Bioinformatics
, vol.24
, pp. 1433-1441
-
-
Kojima, K.1
Nagasaki, M.2
Miyano, S.3
-
14
-
-
0001492480
-
Centrality in valued graphs: A measure of betweenness based on network flow
-
10.1016/0378-8733(91)90017-N
-
Freeman LC Borgatti SP White DR Centrality in valued graphs: A measure of betweenness based on network flow Social Networks 1991, 13:141-154. 10.1016/0378-8733(91)90017-N
-
(1991)
Social Networks
, vol.13
, pp. 141-154
-
-
Freeman, L.C.1
Borgatti, S.P.2
White, D.R.3
-
15
-
-
0037062448
-
Community structure in social and biological networks
-
122977 12060727 10.1073/pnas.122653799
-
Girvan M Newman MEJ Community structure in social and biological networks PNAS 2002, 99:7821-7826. 122977 12060727 10.1073/pnas.122653799
-
(2002)
PNAS
, vol.99
, pp. 7821-7826
-
-
Girvan, M.1
Newman, M.E.J.2
-
16
-
-
25444490121
-
The Use of Edge-Betweenness Clustering to Investigate Biological Function in Protein Interaction Networks
-
555937 10.1186/1471-2105-6-39
-
Dunn R Dudbridge F Sanderson CM The Use of Edge-Betweenness Clustering to Investigate Biological Function in Protein Interaction Networks BMC Bioinformatics 2005, 6:39. 555937 15740614 10.1186/1471-2105-6-39
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 39
-
-
Dunn, R.1
Dudbridge, F.2
Sanderson, C.M.3
-
17
-
-
0035648637
-
A Faster Algorithm for Betweenness Centrality
-
Brandes U A Faster Algorithm for Betweenness Centrality Journal of Mathematical Soctology 2001, 25:163-177.
-
(2001)
Journal of Mathematical Soctology
, vol.25
, pp. 163-177
-
-
Brandes, U.1
-
19
-
-
85027125892
-
Comparison of Centrality for Biological Networks
-
Bioinformatics Center Gatersleben-Halle Stoye GJ
-
Koschutzki D Schreiber F Comparison of Centrality for Biological Networks Proceedings German conference for bioinformatics Bioinformatics Center Gatersleben-Halle Stoye GJ 2004, 199-206.
-
(2004)
Proceedings German Conference for Bioinformatics
, pp. 199-206
-
-
Koschutzki, D.1
Schreiber, F.2
-
20
-
-
0035799707
-
Lethality and Centrality in Protein Networks
-
10.1038/35075138
-
Jeong H Mason SP Barabasi AL Oltvai ZN Lethality and Centrality in Protein Networks Nature 2001, 411:41-42. 10.1038/35075138 11333967
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabasi, A.L.3
Oltvai, Z.N.4
-
21
-
-
33846681448
-
Modular organization of protein interaction networks
-
10.1093/bioinformatics/btl562
-
Luo F Yang Y Chen CF Change R Zhou J Modular organization of protein interaction networks Bioinformatics 2002, 23:207-214. 10.1093/ bioinformatics/btl562
-
(2002)
Bioinformatics
, vol.23
, pp. 207-214
-
-
Luo, F.1
Yang, Y.2
Chen, C.F.3
Change, R.4
Zhou, J.5
-
22
-
-
0030264246
-
Drawing Graphs Nicely Using Simulated Annealing
-
10.1145/234535.234538
-
Davidson R Harel D Drawing Graphs Nicely Using Simulated Annealing ACM Transactions on Graphics 1996, 15:301-331. 10.1145/234535.234538
-
(1996)
ACM Transactions on Graphics
, vol.15
, pp. 301-331
-
-
Davidson, R.1
Harel, D.2
-
23
-
-
0021644214
-
The Quadtree and Related Heiarchical Data Structures
-
10.1145/356924.356930
-
Samet H The Quadtree and Related Heiarchical Data Structures ACM Computing Surveys 1984, 16:187-260. 10.1145/356924.356930
-
(1984)
ACM Computing Surveys
, vol.16
, pp. 187-260
-
-
Samet, H.1
-
27
-
-
33845444174
-
A complex oscillating network of signaling genes underlies the mouse segmentation clock
-
10.1126/science.1133141 17095659
-
Deque'ant ML Glynn E Gaudenz K Wahl M Chen J Mushegian A Pourquie' O A complex oscillating network of signaling genes underlies the mouse segmentation clock Science 2006, 314:1595-1598. 10.1126/science.1133141 17095659
-
(2006)
Science
, vol.314
, pp. 1595-1598
-
-
Deque'ant, M.L.1
Glynn, E.2
Gaudenz, K.3
Wahl, M.4
Chen, J.5
Mushegian, A.6
Pourquie', O.7
-
28
-
-
0036013593
-
Statistical mechanics of complex networks
-
10.1103/RevModPhys.74.47
-
Albert R Barabasi AL Statistical mechanics of complex networks Reviews of Modern Physics 2002, 74:47-97. 10.1103/RevModPhys.74.47
-
(2002)
Reviews of Modern Physics
, vol.74
, pp. 47-97
-
-
Albert, R.1
Barabasi, A.L.2
-
29
-
-
0024640140
-
An algorithm for drawing general undirected graphs
-
10.1016/0020-0190(89)90102-6
-
Kamada T Kawai S An algorithm for drawing general undirected graphs Information Processing Letters 1989, 31:7-15. 10.1016/ 0020-0190(89)90102-6
-
(1989)
Information Processing Letters
, vol.31
, pp. 7-15
-
-
Kamada, T.1
Kawai, S.2
-
31
-
-
0002226683
-
Pajek - Program for large network analysis
-
Batagelj V Mrvar A Pajek - program for large network analysis Connections 1998, 21:47-57.
-
(1998)
Connections
, vol.21
, pp. 47-57
-
-
Batagelj, V.1
Mrvar, A.2
-
33
-
-
0142148182
-
A fast layout algorithm for protein interaction networks
-
10.1093/bioinformatics/btg346 14555620
-
Han K Ju B A fast layout algorithm for protein interaction networks Bioinformatics 2003, 19:1882-1888. 10.1093/bioinformatics/btg346 14555620
-
(2003)
Bioinformatics
, vol.19
, pp. 1882-1888
-
-
Han, K.1
Ju, B.2
-
34
-
-
2642533799
-
Genomic Object Net: I. A platform for modeling and simulating biopathways
-
15130806
-
Nagasaki M Doi A Matsuno H Miyano S Genomic Object Net: I. A platform for modeling and simulating biopathways Applied Bioinformatics 2003, 2:181-184. 15130806
-
(2003)
Applied Bioinformatics
, vol.2
, pp. 181-184
-
-
Nagasaki, M.1
Doi, A.2
Matsuno, H.3
Miyano, S.4
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