Robustness of QTLs across germplasm pools using a model quantitative trait

Genome

Volumn 52, Issue 1, 2009, Pages 39-48

  Lee, E A ^a   Staebler, J M ^a   Grainger, C ^a   Snook, M E ^b  

^a UNIVERSITY OF GUELPH   (Canada)

^b RUSSELL RESEARCH CENTER   (United States)

Author keywords

C glycosyl flavones; Maize; Popcorn; QTLs; Zea mays L.

Indexed keywords

FLAVONE DERIVATIVE;

ALLELE; ANIMAL; ARTICLE; BIOLOGICAL MODEL; CHROMOSOME MAP; CROSS BREEDING; GENETIC PROCEDURES; GENETIC VARIABILITY; GENETICS; GENOTYPE; GLYCOSYLATION; MAIZE; METABOLISM; PHENOTYPE; PLANT GENE; QUANTITATIVE TRAIT LOCUS;

ALLELES; ANIMALS; CHROMOSOME MAPPING; CROSSES, GENETIC; FLAVONES; GENES, PLANT; GENETIC TECHNIQUES; GENETIC VARIATION; GENOTYPE; GLYCOSYLATION; MODELS, GENETIC; PHENOTYPE; QUANTITATIVE TRAIT LOCI; ZEA MAYS;

ZEA MAYS;

EID: 65349090026     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G08-100     Document Type: Article

References (36)

1. Anderson, E.G. 1921. The inheritance of salmon silk color in maize. Cornell Univ. Agric. Exp. Stn. Mem. 48: 535-554.
2. Brown, W.L., and Goodman, M.M. 1977. Races of corn. In Corn and corn improvement. Edited by G.F. Sprague. American Society of Agronomy, Madison, Wis. pp. 49-88.
3. Byrne, P.F., McMullen, M.D., Snook, M.E., Musket, T.A., Theuri, J.M., Widstrom, N.W., et al. 1996. Quantitative trait loci and metabolic pathways: genetic control of the concentration of maysin, a corn earworm resistance factor, in maize silks. Proc. Natl. Acad. Sci. U.S.A. 93: 8820-8825. doi:10.1073/pnas.93.17. 8820. PMID:11607699.
4. Byrne, P.F., McMullen, M.D., Wiseman, B.R., Snook, M.E., Musket, T.A., Theuri, J.M., et al. 1998. Maize silk maysin concentration and corn earworm antibiosis: QTLs and genetic mechanisms. Crop Sci. 38: 461-471.
5. Chen, J., Greenblatt, I.M., and Dellaporta, S.L. 1987. Transposition of Ac from the P locus of maize into unreplicated chromosomal sites. Genetics, 117: 109-116. PMID:2822530.
6. Cortes-Cruz, M., Snook, M., and McMullen, M.D. 2003. The genetic basis of C-glycosyl flavone B-ring modification in maize (Zea mays L.) silks. Genome, 46: 182-194. doi:10.1139/g02-119. PMID:12723034.
7. Dellaporta, S.L., Greenblatt, I.M., Kermicle, J., Hicks, J.B., and Wessler, S.R. 1988. Molecular cloning of the maize R-nj allele by transposon tagging with Ac. In Chromosome structure and function, 18th Stadler Genetics Symposium. Edited by J.P. Gus-tafson and R. Appels. Plenum Press, New York. pp. 263-282.
8. Elliger, C.A., Chan, B.G., Waiss, A.C., Jr., Lundin, R.E., and Had-don, W.F. 1980a. C-glycosylflavones from Zea mays that inhibit insect development. Phytochemistry, 19: 293-297. doi:10.1016/ S0031-9422(00)81977-9.
9. Elliger, C.A., Chan, G.B., and Waiss, A.C., Jr. 1980b. Flavonoids as larval growth inhibitors. Naturwissenschaften, 67: 358-360. doi:10.1007/BF01106595.
10. Grotewold, E., Drummond, B.J., Bowen, B., and Peterson, T. 1994. The mybhomologous P gene controls phlobaphene pigmentation in maize floral organs by directly activating a flavonoid biosyn-thetic gene subset. Cell, 76: 543-553. doi:10.1016/0092-8674(94)90117-1. PMID:8313474.
11. Holland, J.B., Moser, H.S., O'Donoughue, L.S., and Lee, M. 1997. QTLs and epistasis associated with vernalization responses in oat. Crop Sci. 37: 1306-1316.
12. Larson, R.L., Bussard, J.B., and Coe, E.H. 1986. Gene-dependent flavonoid 3′-hydroxylation in maize. Biochem. Genet. 24: 615- 624. doi:10.1007/BF00504338. PMID:3753432.
13. Lee, E.A., Byrne, P.F., McMullen, M.D., Snook, M.E., Wiseman, B.R., Widstrom, N.W., and Coe, E.H. 1998. Genetic mechanism underlying apimaysin and maysin synthesis and corn earworm antibiosis in maize (Zea mays L.). Genetics, 149: 1997-2006. PMID:9691053.
14. Lee, E.A., Singh, A., Ash, M.J., and Good, B. 2006. Use of sister-lines and the performance of modified single-cross maize hybrids. Crop Sci. 46: 312-320. doi:10.2135/cropsci2005.0103.
15. Lee, M., Sharopova, N., Beavis, W.D., Grant, D., Katt, M., Blair, D.L., and Hallauer, A.R. 2002. Expanding the genetic map of maize with the intermated B73 × Mo17 (IBM) population. Plant Mol. Biol. 48: 453-461. doi:10.1023/A:1014893521186. PMID:11999829.
16. MaizeGDB. 2008. Maize genetics and genomics database. www. maizegdb.org. USDA/ARS. (Verified 7-8-08.)
17. Matsuoka, Y., Vigouroux, Y., Goodman, M.M., Sanchez G, J., Buckler, E., and Doebley, J. 2002. A single domestication for maize shown by multilocus microsatellite genotyping. Proc. Natl. Acad. Sci. U.S.A. 99: 6080-6084. doi:10.1073/pnas. 052125199. PMID:11983901.
18. McMullen, M.D., Byrne, P.F., Snook, M.E., Wiseman, B.R., Lee, E.A., Widstrom, N.W., and Coe, E.H. 1998. Quantitative trait loci and metabolic pathways. Proc. Natl. Acad. Sci. U.S.A. 95: 1996-2000. doi:10.1073/pnas.95.5.1996. PMID:9482823.
19. McMullen, M.D., Snook, M., Lee, E.A., Byrne, P.F., Kross, H., Musket, T.A., et al. 2001. The biological basis of epistasis between quantitative trait loci for flavone and 3-deoxyanthocyanin synthesis in maize (Zea mays L.). Genome, 44: 667-676. doi:10. 1139/gen-44-4-667. PMID:11550903.
20. McMullen, M.D., Kross, H., Snook, M.E., Cortes-Cruz, M., Hou-chins, K.E., Musket, T.A., and Coe, E.H., Jr. 2004. Salmon silk genes contribute to the elucidation of the flavone pathway in maize (Zea mays L.). J. Hered. 95: 225-233. doi:10.1093/ jhered/esh042. PMID:15220389.
21. Nelson, O.E. 1993. The gametophyte factors of maize. In The maize handbook. Edited by M. Freeling and V. Walbot. Springer-Verlag, New York, Berlin, and Heidelberg. pp. 496-503.
22. Paz-Ares, J., Wienand, U., Peterson, PA., and Saedler, H. 1986. Molecular cloning of the c locus of Zea mays: a locus regulating the anthocyanin pathway. EMBO J. 5: 829-833. PMID:15957214.
23. Peterson, T. 1990. Intragenic transposition of Ac generates a new allele of the maize P gene. Genetics, 126: 469-476. PMID:1700963.
24. Santacruz-Varela, A., Widrlechner, M.P., Ziegler, K.E., Salvador, R.J., Millard, M.J., and Bretting, P.K. 2004. Relationships among North American popcorns and their evolutionary links to Mexican and South American popcorns. Crop Sci. 44: 1456-1467.
25. SAS Institute Inc. 1999. SAS language guide. Release 8.00 edition. SAS Institute Inc., Cary, N.C.
26. Schwartz, D. 1950. The analysis of case of cross sterility in maize. Proc. Natl. Acad. Sci. U.S.A. 36: 719-724. doi:10.1073/pnas.36. 12.719. PMID:14808161.
27. Senior, M.L., Murphy, J.P., Goodman, M.M., and Stuber, C.W. 1998. Utility of SSRs for determining genetic similarities and relationships in maize using an agarose gel system. Crop Sci. 38: 1088-1098.
28. Sharopova, N., McMullen, M.D., Schultz, L., Schroeder, S., San-chez-Villeda, H., Gardiner, J., et al. 2002. Development and mapping of SSR markers for maize. Plant Mol. Biol. 48: 463- 481. doi:10.1023/A: 1014868625533. PMID:12004892.
29. Snook, M.E., Widstrom, N.W., and Gueldner, R.C. 1989. Re-versed-phase high-performance liquid chromotographic procedure for the determination of maysin in corn silks. J. Chromatogr. A, 477: 439-447. doi:10.1016/S0021-9673(01) 89654-0.
30. Snook, M.E., Gueldner, R.C., Widstrom, N.W., Wiseman, B.R., Himmelsbach, D.S., Harwood, J.S., and Costello, C.E. 1993. Levels of maysin and maysin analogues in silks of maize germ-plasm. J. Agric. Food Chem. 41: 1481-1485. doi:10.1021/ jf00033a024.
31. Szalma, S.J., Snook, M.E., Bushman, B.S., Houchins, K.E., and McMullen, M.D. 2002. Duplicate loci as QTL: the role of chal-cone synthase loci in flavone and phenylpropanoid biosynthesis in maize. Crop Sci. 42: 1679-1687.
32. Taramino, G., and Tingey, S. 1996. Simple sequence repeats for germplasm analysis and mapping in maize. Genome, 39: 277- 287. doi:10.1139/g96-038. PMID:8984002.
33. Waiss, A.C., Jr., Chan, B.G., Elliger, C.A., Wiseman, B.R., McMil-lian, W.W., Widstrom, N.W., et al. 1979. Maysin, a flavone gly-coside from corn silks with antibiotic activity toward corn earworm. J. Econ. Entomol. 72: 256-258.
34. Waiss, A.C., Jr., Chan, B.G., Elliger, C.A., Dreyer, D.L., Binder, R.G., and Gueldner, R.C. 1981. Insect growth inhibitors in crop plants. Bull. Entomol. Soc. Am. 27: 217-221.
35. Zhang, P., Chopra, S., and Peterson, T.A. 2000. A segmental gene duplication generated differentially expressed myb-homologous genes in maize. Plant Cell, 12: 2311-2322. doi:10.1105/tpc.12. 12.2311. PMID:11148280.
36. Zhang, P., Wang, Y., Zhang, J., Maddock, S., Snook, M.E., and Peterson, T.A. 2003. A maize QTL for silk maysin levels contains duplicated myb homologous genes which jointly regulate fla-vone biosynthesis. Plant Mol. Biol. 52: 1-15. doi:10.1023/ A:1023942819106. PMID:12825685.