Targeted N-linked glycosylation analysis of H5N1 influenza hemagglutinin by selective sample preparation and liquid chromatography/tandem mass spectrometry

Analytical Chemistry

Volumn 81, Issue 8, 2009, Pages 3109-3118

  Blake, Thomas A ^a   Williams, Tracie L ^a   Pirkle, James L ^a   Barr, John R ^a  

^a NATIONAL CENTER FOR ENVIRONMENTAL HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCES; ANTIGENICITY; ECTODOMAIN; GLYCANS; GLYCOPEPTIDES; HYDROPHILIC INTERACTION LIQUID CHROMATOGRAPHIES; INFLUENZA VIRUS; LIQUID CHROMATOGRAPHY/TANDEM MASS SPECTROMETRIES; N TERMINALS; N-LINKED GLYCOSYLATION; POST-TRANSLATIONAL MODIFICATIONS; PROTEIN SEQUENCES; SAMPLE COMPLEXITY; SAMPLE PREPARATIONS; SITE OCCUPATIONS; SOLID-PHASE EXTRACTIONS; TRYPTIC DIGESTS;

AMINES; AMINO ACIDS; BINARY MIXTURES; CHROMATOGRAPHIC ANALYSIS; ESTERIFICATION; GLYCOSYLATION; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; HYDROPHILICITY; HYDROXYLATION; LIQUIDS; MASS SPECTROMETERS; MASS SPECTROMETRY; ORGANIC ACIDS; PEPTIDES; SPECTRUM ANALYSIS; STRAIN; VIRUSES;

EXTRACTION;

GLYCAN; GLYCOPEPTIDE; HYDRAZIDE; VIRUS HEMAGGLUTININ;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ANTIGENICITY; ARTICLE; CHICKEN; EMBRYO; INFLUENZA VIRUS A H5N1; LIQUID CHROMATOGRAPHY; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN GLYCOSYLATION; SOLID PHASE EXTRACTION; TANDEM MASS SPECTROMETRY; VIRUS VIRULENCE;

AMINO ACID SEQUENCE; ANALYTIC SAMPLE PREPARATION METHODS; BINDING SITES; CHROMATOGRAPHY, LIQUID; GLYCOSYLATION; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; INFLUENZA A VIRUS, H5N1 SUBTYPE; INFLUENZA VACCINES; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; REASSORTANT VIRUSES; SOLID PHASE EXTRACTION; TANDEM MASS SPECTROMETRY; TRYPSIN; VIRULENCE;

EID: 65249188741     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac900095h     Document Type: Article

References (67)

1. Skehel, J. J.; Wiley, D. C. Annu. Rev. Biochem. 2000, 69, 531-569.
2. Bullough, P. A.; Hughson, F. M.; Skehel, J. J.; Wiley, D. C. Nature 1994, 371, 37-43.
3. Gambaryan, A. S.; Marinina, V. P.; Tuzikov, A. B.; Bovin, N. V.; Rudneva, I. A.; Sinitsyn, B. V.; Shilov, A. A.; Matrosovich, M. N. Virology 1998,247, 170-177.
4. Matrosovich, M.; Zhou, N.; Kawaoka, Y.; Webster, R. J. Virol. 1999, 73, 1146-1155.
5. Ohuchi, M.; Ohuchi, R.; Feldmann, A.; Klenk, H. D. J. Virol. 1997, 71, 8377-8384.
6. Mishin, V. P.; Novikov, D.; Hayden, F. G.; Gubareva, L. V. J. Virol. 2005, 79, 12416-12424.
7. Wagner, R.; Wolff, T.; Herwig, A.; Pleschka, S.; Klenk, H.-D. J. Virol. 2000, 74, 6316-6323.
8. Munk, K.; Pritzer, E.; Kretzschmar, E.; Gutte, B.; Garten, W.; Klenk, H.-D. Glycobiology 1992, 2, 233-240.
9. Skehel, J. J.; Stevens, D. J.; Daniels, R. S.; Douglas, A. R.; Knossow, M.; Wilson, I. A.; Wiley, D. C. Proc. Natl. Acad. Sci. U.S.A 1984, 81, 1779-1783.
10. Abe, Y.; Takashita, E.; Sugawara, K.; Matsuzaki, Y.; Muraki, Y.; Hongo, S. J. Virol. 2004, 78, 9605-9611.
11. Klenk, H.-D.; Rott, R.; Orlich, M.; Blödorn, J. Virology 1975, 68, 426-439.
12. Lazarowitz, S. G.; Choppin, P. W. Virology 1975, 68, 440-454.
13. Bosch, F. X.; Garten, W.; Klenk, H. D.; Rott, R. Virology 1981, 113, 725-735.
14. Deshpande, K. L.; Fried, V. A.; Ando, M.; Webster, R. G. Proc. Natl. Acad. Sci. U.S.A 1987, 84, 36-40.
15. Ohuchi, M.; Orlich, M.; Ohuchi, R.; Simpson, B. E. J.; Garten, W.; Klenk, H.-D.; Rott, R. Virology 1989, 168, 274-280.
16. Deom, C. M.; Schulze, I. T. J. Biol. Chem. 1985, 260, 14771-14774.
17. Wagner, R.; Geyer, H.; Geyer, R.; Klenk, H.-D. J. Virol. 1996, 70, 4103-4109.
18. Mir-Shekari, S. Y.; Ashford, D. A.; Harvey, D. J.; Dwek, R. A.; Schulze, I. T. J. Biol. Chem. 1997, 272, 4027-4036.
19. Schulze, I. T. J. Infect. Dis. 1997, 176, S24-S28.
20. Keil, W.; Niemann, H.; Schwarz, R. T.; Klenk, H. D. Virology 1984, 133, 77-91.
21. Basak, S.; Pritchard, D. G.; Bhown, A. S.; Compans, R. W. J. Virol. 1981, 37, 549-558.
22. Keil, W.; Geyer, R.; Dabrowski, J.; Dabrowski, U.; Niemann, H. v.; Stirml, S.; Klenk, H.-D. EMBO J. 1985, 4, 2711-2720.
23. Inkster, M. D.; Hinshaw, V. S.; Schulze, I. T. J. Virol. 1993, 67, 7436-7443.
24. Zhang, M.; Gaschen, B.; Blay, W.; Foley, B.; Haigwood, N.; Kuiken, C; Korber, B. Glycobiology 2004, 14, 1229-1246.
25. Vigerust, D. J.; Ulett, K. B.; Boyd, K L.; Madsen, J.; Hawgood, S.; McCullers, J. A. J. Virol. 2007, 81, 8593-8600.
26. Morelle, W.; Canis, K; Chirat, F.; Faid, V.; Michalski, J.-C. Proteomics 2006, 6, 3993-4015.
27. Wuhrer, M.; Catalina, M. I.; Deelder, A. M.; Hokke, C. H.J. Chromatogr., B 2007, 849, 115-128.
28. Dalpathado, D. S.; Desaire, H. Analyst 2008, 133, 731-738.
29. Hogan, J. M.; Pitteri, S. J.; Chrisman, P. A.; McLuckey, S. A. J. Proteome Res. 2005, 4, 628-632.
30. Adamson, J. T.; Hakansson, K J. Proteome Res. 2006, 5, 493-501.
31. Alley, W. R.; Mechref, Y.; Novotny, M. V. Rapid Commun. Mass Spectrom. 2009, 23, 161-170.
32. Wu, S.-L.; Huhmer, A. F. R.; Hao, Z.; Karger, B. L. J. Proteome Res. 2007, 6, 4230-4244.
33. Ceroni, A.; Maass, K.; Geyer, H.; Geyer, R.; Dell, A.; Haslam, S. M. J. Proteome.Res. 2008, 7, 1650-1659.
34. Go, E. P.; Rebecchi, K R.; Dalpathado, D. S.; Bandu, M. L.; Zhang, Y.; Desaire, H. Anal. Cham. 2007, 79, 1708-1713.
35. Goldberg, D.; Bern, M.; Parry, S.; Sutton-Smith, M.; Panico, M.; Morris, H. R.; Dell, A. J. Proteome Res. 2007, 6, 3995-4005.
36. Irungu, J.; Go, E. P.; Dalpathado, D. S.; Desaire, H. Anal. Chem. 2007, 79, 3065-3074.
37. Ozohanics, O.; Krenyacz, J.; Ludányi, K.; Pollreisz, F.; Vékey, K; Drahos, L. Rapid Commun. Mass Spectrom. 2008, 22, 3245-3254.
38. Opitz, L.; Salaklang, J.; Buttner, H.; Reichl, U.; Wolff, M. W. Vaccine 2007, 25, 939-947.
39. Opitz, L.; Zimmermann, A.; Lehmann, S.; Genzel, Y.; Lübben, H.; Reichl, U.; Wolff, M. W. J. Virol. Methods 2008, 154, 61-68.
40. Madera, M.; Mechref, Y.; Novotny, M. V. Anal. Chem. 2005, 77, 4081-4090.
41. Zhang, H.; Li, X.-j.; Martin, D. B.; Aebersold, R. Nat. Biotechnol. 2003,21, 660-666.
42. Tian, Y.; Zhou, Y.; Elliott, S.; Aebersold, R.; Zhang, H. Nat. Protoc. 2007, 2, 334-339.
43. Zhang, Y.; Go, E. P.; Desaire, H. Anal. Chem. 2008, 80, 3144-3158.
44. Yu, Y. Q.; Gilar, M.; Lee, P. J.; Bouvier, E. S.; Gebler, J. C. Anal. Chem. 2003, 75, 6023-6028.
45. Clauser, K. R.; Baker, P.; Burlingame, A. L. Anal. Chem. 1999, 71, 2871-2882.
46. Bao, Y.; Bolotov, P.; Dernovoy, D.; Kiryutin, B.; Zaslavsky, L.; Tatusova, T.; Ostell, J.; Lipman, D.J. Virol. 2008, 82, 596-601.
47. Edgar, R. Nucleic. Acids Res. 2004, 32, 1792-1797.
48. Cooper, C. A.; Gasteiger, E.; Packer, N. H. Pmteomics 2001, 1, 340-349.
49. Williams, T. L.; Luna, L.; Guo, Z.; Cox, N. J.; Pirkle, J. L.; Donis, R. O.; Barr, J. R. Vaccine 2008, 26, 2510-2520.
50. Luna, L. G.; Williams, T. L; Pirkle, J. L.; Barr, J. R. Anal. Chem. 2008, 80, 2688-2693.
51. Conboy, J. J.; Henion, J. D. J. Am. Soc. Mass Spectrom. 1992, 3, 804-814.
52. Medzihradszky, K. F.; Gillece-Castro, B. L.; Settineri, C. A.; Townsend, R. R.; Masiarz, F. R.; Burlingame, A. L. Biol. Mass Spectrom. 1990,19, 777-781.
53. Kuster, B.; Mann, M. Anal. Chem. 1999, 71, 1431-1440.
54. Atwood, J. A., III.; Minning, T.; Ludolf, F.; Nuccio, A.; Weatherly, D. B.; Alvarez-Manilla, G.; Tarleton, R.; Orlando, R. J. Proteome Res. 2006, 5, 3376-3384.
55. Angel, P. M.; Lim, J.-M.; Wells, L.; Bergmann, C; Orlando, R. Rapid Commun. Mass Spectrom. 2007, 21, 674-682.
56. Bouchon, B.; Jaquinod, M.; Klarskov, K.; Trottein, F.; Klein, M.; Van Dorsselaer, A.; Bischoff, R.; Roitsch, C. J. Chromatogr., B 1994, 662, 279-290.
57. Lagerwerf, F. M.; Weert, M. v. d.; Heerma, W.; Haverkamp, J. Rapid Commun.Mass. Spectrom. 1996, 10, 1905-1910.
58. Mo, W.; Ma, Y.; Takao, T.; Neubert, T. A. Rapid Commun. Mass Spectrom. 2000, 14, 2080-2081.
59. Taylor, S. W.; Fahy, E.; Murray, J.; Capaldi, R. A.; Ghosh, S. S. J. Biol. Chem. 2003, 278, 19587-19590.
60. Yagüe, J.; Núñez, A.; Boix, M.; Esteller, M.; Alfonso, P.; Casal, J. I. Proteomics 2005, 5, 2761-2768.
61. Geoghegan, K F.; Hoth, L. R.; Tan, D. H.; Borzilleri, K A.; Withka, J. M.; Boyd, J. G. J. Proteome Res. 2002, 1, 181-187.
62. Carr, S. A.; Huddleston, M. J.; Bean, M. F. Protein Sci. 1993,2, 183-196.
63. Sullivan, B.; Addona, T. A.; Carr, S. A. Anal. Chem. 2004, 76, 3112-3118.
64. Olivova, P.; Chen, W.; Chakraborty, A. B.; Gebler, J. C. Rapid Commun. Mass Spectrom. 2008, 22, 29-40.
65. Wuhrer, M.; Boer, A. R. d.; Deelder, A. M. Mass Spectrom. Rev. 2009,28, 192-206.
66. Zaia, J. Mass Spectrom. Rev. 2009, 28, 254-272.
67. Bateman, R. H.; Carruthers, R.; Hoyes, J. B.; Jones, C.; Langridge, J. I.; Millar, A.; Vissers, J. P. C. J. Am. Soc. Mass Spectrom. 2002, 13, 792-803.