-
1
-
-
0026794668
-
The mutational spectrum of single base-pair substitutions in mRNAsplicejunctions of human genes: Causes and consequences
-
Krawczak M, Reiss J, Cooper DN (1992) The mutational spectrum of single base-pair substitutions in mRNAsplicejunctions of human genes: Causes and consequences. Hum Genet 90:41-54.
-
(1992)
Hum Genet
, vol.90
, pp. 41-54
-
-
Krawczak, M.1
Reiss, J.2
Cooper, D.N.3
-
2
-
-
0033835333
-
Sorting out the complexity of SR protein functions
-
Graveley BR (2000) Sorting out the complexity of SR protein functions. RNA 6:1197-1211.
-
(2000)
RNA
, vol.6
, pp. 1197-1211
-
-
Graveley, B.R.1
-
3
-
-
14644431487
-
Broad specificity of SR (serine/arginine) proteins in the regulation of alternative splicing of pre-messenger RNA
-
Bourgeois CF, Lejeune F, Stevenin J (2004) Broad specificity of SR (serine/arginine) proteins in the regulation of alternative splicing of pre-messenger RNA. Prog Nucleic Acid Res Mol Biol 78:37-88.
-
(2004)
Prog Nucleic Acid Res Mol Biol
, vol.78
, pp. 37-88
-
-
Bourgeois, C.F.1
Lejeune, F.2
Stevenin, J.3
-
4
-
-
33745609509
-
RS domains contact splicing signals and promote splicing by a common mechanism in yeast through humans
-
Shen H, Green MR (2006) RS domains contact splicing signals and promote splicing by a common mechanism in yeast through humans. Genes Dev 20:1755-1765.
-
(2006)
Genes Dev
, vol.20
, pp. 1755-1765
-
-
Shen, H.1
Green, M.R.2
-
5
-
-
0142091509
-
Regulation of alternative splicing by SRrp86 and its interacting proteins
-
Li J, et al. (2003) Regulation of alternative splicing by SRrp86 and its interacting proteins. Mol Cell Biol 23:7437-7447.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 7437-7447
-
-
Li, J.1
-
6
-
-
0035833259
-
ZNF265, a novel spliceosomal protein able to induce alternative splicing
-
Adams DJ, etal. (2001) ZNF265, a novel spliceosomal protein able to induce alternative splicing. J Cell Biol 154:25-32.
-
(2001)
J Cell Biol
, vol.154
, pp. 25-32
-
-
Adams, D.J.1
-
7
-
-
38949162902
-
Expression pattern and splicing function of mouseZNF265
-
Li J, etal. (2008) Expression pattern and splicing function of mouseZNF265. Neurochem Res 33:483-489.
-
(2008)
Neurochem Res
, vol.33
, pp. 483-489
-
-
Li, J.1
-
8
-
-
0038604103
-
The structure of the zinc finger domain from human splicing factor ZNF265 fold
-
PlambeckCA
-
PlambeckCA, etal. (2003) The structure of the zinc finger domain from human splicing factor ZNF265 fold. J Biol Chem 278:22805-22811.
-
(2003)
J Biol Chem
, vol.278
, pp. 22805-22811
-
-
-
9
-
-
0038036801
-
Structure and ubiquitin interactions of the conserved zinc finger domain of Npl4
-
Wang B, et al. (2003) Structure and ubiquitin interactions of the conserved zinc finger domain of Npl4. J Biol Chem 278:20225-20234.
-
(2003)
J Biol Chem
, vol.278
, pp. 20225-20234
-
-
Wang, B.1
-
10
-
-
2342522100
-
Ubiquitin interactions of NZF zinc fingers
-
Alam SL, et al. (2004) Ubiquitin interactions of NZF zinc fingers. EMBO J 23:1411-1421.
-
(2004)
EMBO J
, vol.23
, pp. 1411-1421
-
-
Alam, S.L.1
-
11
-
-
34447124442
-
Molecular characterization of the ran-binding zinc finger domain of NUP153
-
Higa MM, Alam SL, SundquistWI, Ullman KS (2007) Molecular characterization of the ran-binding zinc finger domain of NUP153. J Biol Chem 282:17090-17100.
-
(2007)
J Biol Chem
, vol.282
, pp. 17090-17100
-
-
Higa, M.M.1
Alam, S.L.2
Sundquist, W.I.3
Ullman, K.S.4
-
12
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
ZukerM
-
ZukerM (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31:3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
-
13
-
-
5044222204
-
How did alternative splicing evolve?
-
Ast G (2004) How did alternative splicing evolve? Nat Rev Genet 5:773-782.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 773-782
-
-
Ast, G.1
-
14
-
-
0031921640
-
Statistical features of human exons and their flanking regions
-
Zhang MQ (1998) Statistical features of human exons and their flanking regions. Hum Mol Genet 7:919-932.
-
(1998)
Hum Mol Genet
, vol.7
, pp. 919-932
-
-
Zhang, M.Q.1
-
15
-
-
31344438433
-
Solution structure of the C4 zinc finger domain of HDM2
-
Yu GW, Allen MD, Andreeva A, Fersht AR, Bycroft M (2006) Solution structure of the C4 zinc finger domain of HDM2. Protein Sci 15:384-389.
-
(2006)
Protein Sci
, vol.15
, pp. 384-389
-
-
Yu, G.W.1
Allen, M.D.2
Andreeva, A.3
Fersht, A.R.4
Bycroft, M.5
-
16
-
-
34547592557
-
MolProbity: All-atom contacts and structure validation for proteins and nucleic acids
-
Davis IW, et al. (2007) MolProbity: All-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res 35:W375-383.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Davis, I.W.1
-
17
-
-
0037442962
-
HADDOCK: A protein-protein docking approach based on biochemical or biophysical information
-
Dominguez C, Boelens R, Bonvin AM (2003) HADDOCK: A protein-protein docking approach based on biochemical or biophysical information. J Am ChemSoc 125:1731-1737.
-
(2003)
J Am ChemSoc
, vol.125
, pp. 1731-1737
-
-
Dominguez, C.1
Boelens, R.2
Bonvin, A.M.3
-
18
-
-
0032135105
-
Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: Insights into DNA sequence discrimination by Ets proteins
-
Mo Y, Vaessen B, Johnston K, Marmorstein R (1998) Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: Insights into DNA sequence discrimination by Ets proteins. Mol Cell 2:201-212.
-
(1998)
Mol Cell
, vol.2
, pp. 201-212
-
-
Mo, Y.1
Vaessen, B.2
Johnston, K.3
Marmorstein, R.4
-
19
-
-
0028773473
-
Structure of restriction endonuclease bamhi phased at 1.95-Å resolution by MAD analysis
-
Newman M, Strzelecka T, Dorner LF, Schildkraut I, Aggarwal AK (1994) Structure of restriction endonuclease bamhi phased at 1.95-Å resolution by MAD analysis. Structure (London) 2:439-452.
-
(1994)
Structure (London)
, vol.2
, pp. 439-452
-
-
Newman, M.1
Strzelecka, T.2
Dorner, L.F.3
Schildkraut, I.4
Aggarwal, A.K.5
-
20
-
-
0030475417
-
Deep penetration of an α-helix into a widened RNA major groove in the HIV-1 rev peptide-RNAaptamer complex
-
Ye X, Gorin A, Ellington AD, Patel DJ (1996) Deep penetration of an α-helix into a widened RNA major groove in the HIV-1 rev peptide-RNAaptamer complex. Nat Struct Biol 3:1026-1033.
-
(1996)
Nat Struct Biol
, vol.3
, pp. 1026-1033
-
-
Ye, X.1
Gorin, A.2
Ellington, A.D.3
Patel, D.J.4
-
21
-
-
0025773296
-
Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 Å
-
Pavletich NP, Pabo CO (1991) Zinc finger-DNA recognition: Crystal structure of a Zif268-DNA complex at 2.1 Å. Science 252:809-817.
-
(1991)
Science
, vol.252
, pp. 809-817
-
-
Pavletich, N.P.1
Pabo, C.O.2
-
22
-
-
4944256277
-
Structural basis for packaging the dimeric genome of Moloney murine leukemia virus
-
D'Souza V, Summers MF (2004) Structural basis for packaging the dimeric genome of Moloney murine leukemia virus. Nature 431:586-590.
-
(2004)
Nature
, vol.431
, pp. 586-590
-
-
D'Souza, V.1
Summers, M.F.2
-
23
-
-
2242469712
-
Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element
-
De Guzman RN, et al. (1998) Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element. Science 279:384-388.
-
(1998)
Science
, vol.279
, pp. 384-388
-
-
De Guzman, R.N.1
-
25
-
-
0037162703
-
Modular recognition of RNA by a human pumilio-homology domain
-
Wang X, McLachlan J, Zamore PD, Hall TM (2002) Modular recognition of RNA by a human pumilio-homology domain. Cell 110:501-512.
-
(2002)
Cell
, vol.110
, pp. 501-512
-
-
Wang, X.1
McLachlan, J.2
Zamore, P.D.3
Hall, T.M.4
-
26
-
-
2442664066
-
Structural basis of single-stranded RNA recognition
-
Messias AC, Sattler M (2004) Structural basis of single-stranded RNA recognition. Acc Chem Res 37:279-287.
-
(2004)
Acc Chem Res
, vol.37
, pp. 279-287
-
-
Messias, A.C.1
Sattler, M.2
-
27
-
-
0034603208
-
Sequence-specific RNA binding by a Nova KH domain: Implications for paraneoplastic disease and the fragile X syndrome
-
Lewis HA, et al. (2000) Sequence-specific RNA binding by a Nova KH domain: Implications for paraneoplastic disease and the fragile X syndrome. Cell 100:323-332.
-
(2000)
Cell
, vol.100
, pp. 323-332
-
-
Lewis, H.A.1
-
28
-
-
34047142206
-
The testis-specific human protein RBMY recognizes RNA through a novel mode of interaction
-
Skrisovska L, et al. (2007) The testis-specific human protein RBMY recognizes RNA through a novel mode of interaction. EMBO Rep 8:372-379.
-
(2007)
EMBO Rep
, vol.8
, pp. 372-379
-
-
Skrisovska, L.1
-
29
-
-
0034692906
-
Solution structureofthe two N-terminal RNA-binding domains of nucleolin and NMR study of the interaction with its RNA target
-
Allain FH, Gilbert DE, BouvetP,FeigonJ (2000) Solution structureofthe two N-terminal RNA-binding domains of nucleolin and NMR study of the interaction with its RNA target. J Mol Biol 303:227-241.
-
(2000)
J Mol Biol
, vol.303
, pp. 227-241
-
-
Allain, F.H.1
Gilbert, D.E.2
Bouvet, P.3
Feigon, J.4
-
30
-
-
0242581682
-
Crystal structure of a zinc-finger-RNA complex reveals two modes of molecular recognition
-
Lu D, Searles MA, Klug A (2003) Crystal structure of a zinc-finger-RNA complex reveals two modes of molecular recognition. Nature 426:96-100.
-
(2003)
Nature
, vol.426
, pp. 96-100
-
-
Lu, D.1
Searles, M.A.2
Klug, A.3
-
31
-
-
34249316905
-
RNA-binding proteins: Modular design for efficient function
-
Lunde BM, Moore C, Varani G (2007) RNA-binding proteins: Modular design for efficient function. Nat Rev Mol Cell Biol 8:479-490.
-
(2007)
Nat Rev Mol Cell Biol
, vol.8
, pp. 479-490
-
-
Lunde, B.M.1
Moore, C.2
Varani, G.3
-
32
-
-
7244242399
-
Domain architectures and characterization of an RNA-binding protein, TLS
-
Iko Y, et al. (2004) Domain architectures and characterization of an RNA-binding protein, TLS. J Biol Chem 279:44834-44840.
-
(2004)
J Biol Chem
, vol.279
, pp. 44834-44840
-
-
Iko, Y.1
-
33
-
-
0035794162
-
Identification of an RNA binding specificity for the potential splicing factor TLS
-
Lerga A, et al. (2001) Identification of an RNA binding specificity for the potential splicing factor TLS. J Biol Chem 276:6807-6816.
-
(2001)
J Biol Chem
, vol.276
, pp. 6807-6816
-
-
Lerga, A.1
-
34
-
-
33947593538
-
Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes
-
Behzadnia N, et al. (2007) Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes. EMBO J 26:1737-1748.
-
(2007)
EMBO J
, vol.26
, pp. 1737-1748
-
-
Behzadnia, N.1
-
35
-
-
33745860086
-
Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions
-
Deckert J, et al. (2006) Protein composition and electron microscopy structure of affinity-purified human spliceosomal B complexes isolated under physiological conditions. Mol Cell Biol 26:5528-5543.
-
(2006)
Mol Cell Biol
, vol.26
, pp. 5528-5543
-
-
Deckert, J.1
-
36
-
-
0037168541
-
Protein composition of human prespliceosomes isolated by a tobramycin affinity-selection method
-
Hartmuth K, et al. (2002) Protein composition of human prespliceosomes isolated by a tobramycin affinity-selection method. Proc Natl Acad Sci USA 99:16719-16724.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 16719-16724
-
-
Hartmuth, K.1
-
37
-
-
53149145051
-
RBM5/Luca-15/H37 regulates Fas alternative splice site pairing after exon definition
-
Bonnal S, et al. (2008) RBM5/Luca-15/H37 regulates Fas alternative splice site pairing after exon definition. Mol Cell 32:81-95.
-
(2008)
Mol Cell
, vol.32
, pp. 81-95
-
-
Bonnal, S.1
-
38
-
-
57349185582
-
Up-regulation ofthe proapoptotic caspase2 splicing isoform by a candidate tumor suppressor, RBM5
-
Fushimi K,etal. (2008) Up-regulation ofthe proapoptotic caspase2 splicing isoform by a candidate tumor suppressor, RBM5. Proc Natl Acad Sci USA 105:15708-15713.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 15708-15713
-
-
Fushimi, K.1
-
39
-
-
0035423970
-
Isolation and characterization of two novel A20-like proteins
-
Evans PC, et al. (2001) Isolation and characterization of two novel A20-like proteins. Biochem J 357:617-623.
-
(2001)
Biochem J
, vol.357
, pp. 617-623
-
-
Evans, P.C.1
-
40
-
-
33750481849
-
Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8
-
Hargous Y, et al. (2006) Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J 25:5126-5137.
-
(2006)
EMBO J
, vol.25
, pp. 5126-5137
-
-
Hargous, Y.1
-
41
-
-
0034853047
-
Modulation of P-element pre-mRNA splicing by a direct interaction between PSI and U1 snRNP 70K protein
-
Labourier E, Adams MD, Rio DC (2001) Modulation of P-element pre-mRNA splicing by a direct interaction between PSI and U1 snRNP 70K protein. Mol Cell 8:363-373.
-
(2001)
Mol Cell
, vol.8
, pp. 363-373
-
-
Labourier, E.1
Adams, M.D.2
Rio, D.C.3
-
42
-
-
0031033741
-
The alternative splicing factor PSI regulates P-element third intron splicing in vivo
-
Adams MD, Tarng RS, Rio DC (1997) The alternative splicing factor PSI regulates P-element third intron splicing in vivo. Genes Dev 11:129-138.
-
(1997)
Genes Dev
, vol.11
, pp. 129-138
-
-
Adams, M.D.1
Tarng, R.S.2
Rio, D.C.3
-
43
-
-
33749056769
-
An RNA map predicting Nova-dependent splicing regulation
-
Ule J,etal. (2006) An RNA map predicting Nova-dependent splicing regulation. Nature 444:580-586.
-
(2006)
Nature
, vol.444
, pp. 580-586
-
-
Ule, J.1
-
44
-
-
0027939211
-
Characterization of RNA binding specificity of the Drosophila sex-lethal protein by in vitro ligand selection
-
Sakashita E, Sakamoto H (1994) Characterization of RNA binding specificity of the Drosophila sex-lethal protein by in vitro ligand selection. Nucleic Acids Res 22:4082-4086.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4082-4086
-
-
Sakashita, E.1
Sakamoto, H.2
|