Sensitive and rapid detection of infectious pancreatic necrosis virus by reverse transcription loop mediated isothermal amplification

Journal of Virological Methods

Volumn 158, Issue 1-2, 2009, Pages 77-83

  Soliman, Hatem ^a   Midtlyng, Paul J ^b   El Matbouli, Mansour ^a  

^a UNIVERSITY OF MUNICH   (Germany)

^b Centre for Veterinary Contract Research   (Norway)

Author keywords

Aquabirnavirus; Fluorescent detection reagent (FDR); IPN diagnosis; Polyethylenimine (PEI); RT LAMP; SYBR Green I

Indexed keywords

DNA POLYMERASE; RNA; RNA DIRECTED DNA POLYMERASE;

AGAR GEL ELECTROPHORESIS; ANIMAL TISSUE; ARTICLE; ATLANTIC SALMON; CELL CULTURE; CONTROLLED STUDY; INCUBATION TIME; INFECTIOUS PANCREATIC NECROSIS VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION LOOP MEDIATED ISOTHERMAL AMPLIFICATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; TEMPERATURE SENSITIVITY; VIRUS DETECTION;

ANIMALS; BASE SEQUENCE; DNA PRIMERS; INFECTIOUS PANCREATIC NECROSIS VIRUS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID AMPLIFICATION TECHNIQUES; SALMO SALAR; SENSITIVITY AND SPECIFICITY; TEMPERATURE; TIME FACTORS;

AQUABIRNAVIRUS; INFECTIOUS PANCREATIC NECROSIS VIRUS; SALMO SALAR;

EID: 64949158445     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2009.01.018     Document Type: Article

References (33)

1. Ariel E., and Olesen N.J. Finfish in aquaculture and their diseases-a retrospective view on the European Community. Bull. Eur. Assoc. Fish Pathol. 22 (2002) 72-85
2. Blake S.L., Schill W.B., McAllister P.E., Lee M.K., Singer J.T., and Nicholson B.L. Detection and identification of aquatic birnaviruses by PCR assay. J. Clin. Microbiol. 33 (1995) 835-839
3. Bootland L.M., Dobos P., and Stevenson R.M.W. The IPNV carrier state and demonstration of vertical transmission in experimentally infected brook trout. Dis. Aquat. Org. 10 (1991) 13-21
4. Delmas B., Kibenge F.S.B., Leong J.A., Mundt E., Vakharia V.N., and Wu J.L. Birnaviridae. In: Fauquet C.M., Mayo M.A., Maniloff J., Desselberger U., and Ball A.L. (Eds). Virus Taxonomy (2005), Academic Press, London, UK 561-569
5. Dukes J.P., King D.P., and Alexandersen S. Novel reverse transcription loop-mediated isothermal amplification for rapid detection of foot-and-mouth disease virus. Arch. Virol. 151 (2006) 1093-1106
6. Duncan R., Nagy E., Krell P.J., and Dobos P. Synthesis of the infectious pancreatic necrosis virus polyprotein, detection of a virus-encoded protease, and fine structure mapping of genome segment A coding regions. J. Virol. 61 (1987) 3655-3664
7. Duncan R., Mason C.L., Nagy E., Leong J.A., and Dobos P. Sequence analysis of infectious pancreatic necrosis virus genome segment B and its encoded VP1 protein: a putative RNA-dependent RNA polymerase lacking the Gly-Asp-Asp motif. Virology 181 (1991) 541-552
8. Gunimaladevi I., Kono T., LaPatra S.E., and Sakai M. A loop mediated isothermal amplification (LAMP) method for detection of infectious hematopoietic necrosis virus (IHNV) in rainbow trout (Oncorhynchus mykiss). Arch. Virol. 150 (2005) 899-909
9. Imai M., Ninomiya A., Minekawa H., Notomi T., Ishizaki T., Van Tu P., Tien N.T., Tashiro M., and Odagiri T. Rapid diagnosis of H5N1 avian influenza virus infection by newly developed influenza H5 hemagglutinin gene-specific loop-mediated isothermal amplification method. J. Virol. Methods 141 (2007) 173-180
10. Iwamoto T., Sonobe T., and Hayashi K. Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J. Clin. Microbiol. 41 (2003) 2616-2622
11. Jarp J., Greve A.G., Olsen A.B., and Bruheim T. Risk factors for furunculosis, infectious pancreatic necrosis and mortality in post-smolts of Atlantic salmon, Salmo salar L. J. Fish Dis. 18 (1994) 67-78
12. Karlsen F., Steen H., and Nesland J. SYBR Green I DNA staining increases the detection sensitivity of viruses by polymerase chain reaction. J. Virol. Methods 55 (1995) 153-156
13. Lopez-Lastra M., Gonzalez M., Jashes M., and Sandino A.M. A detection method for infectious pancreatic necrosis virus (IPNV) based on reverse transcription (RT)-polymerase chain-reaction (PCR). J. Fish Dis. 17 (1994) 269-282
14. McAllister P.E., and Owens W.J. Assessment of the virulence of fish and molluscan isolates of infectious pancreatic necrosis virus for salmonid fish by challenge of brook trout, Salvelinus fontinalis (Mitchill). J. Fish Dis. 18 (1995) 97-103
15. Mori Y., Hirano T., and Notomi T. Sequence specific visual detection of LAMP reactions by addition of cationic polymers. BMC Biotechnol. 6 (2006) 3
16. Mori Y., Nagamine K., Tomita N., and Notomi T. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem. Biophys. Res. Commun. 289 (2001) 150-154
17. Murray A.G., Busby C.D., and Bruno D.W. Infectious pancreatic necrosis virus in Scottish Atlantic salmon farms 1996-2001. Emerg. Infect. Dis. 9 (2003) 455-460
18. Nagamine K., Hase T., and Notomi T. Accelerated reaction by loop mediated isothermal amplification using loop primers. Mol. Cell. Probes 16 (2002) 223-229
19. Nagamine K., Watanabe K., Ohtsuka K., Hase T., and Notomi T. Loop-mediated isothermal amplification reaction using a non denatured template. Clin. Chem. 47 (2001) 1742-1743
20. Notomi, T., Okayama, H., Masubuchi, H., Yonekawa, T., Watanabe, K., Amino, N., Hase, T., 2000. Loop-mediated isothermal amplification of DNA. Nucl. Acids Res. 28, e63 (i-vii).
21. Office International des Epizooties (OIE), 2006. Infectious pancreatic necrosis. In: Diagnostic Manual for Aquatic Animal Diseases, 5th ed. Office International des Epizooties, Paris, pp. 176-185 (Chapter 2.1.8).
22. Parida M., Posadas G., Inoue S., Hasebe F., and Morita K. Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus. J. Clin. Microbiol. 42 (2004) 257-263
23. Ramstad A., Romstad A.B., Knappskog D.H., and Midtlyng P.J. Field validation of experimental challenge models for IPN vaccines. J. Fish Dis. 30 (2007) 723-731
24. Reno, P., 1999. Infectious pancreatic necrosis and associated aquatic birnaviruses. In: Woo, P.T.K., Bruno, D.W. (Eds.), Fish Diseases and Disorders, vol. 3. CABI Publishing, New York, pp. 1-55, ISBN 0851991947.
25. Rodàk L., Pospìsil Z., Tomànek J., Vesely T., Obr T., and Valicek L. Enzyme-linked immunosorbent assay (ELISA) for the detection of infectious pancreatic necrosis virus (IPNV) in culture fluids and tissue homogenates of the rainbow trout, Salmo gairdneri, Richardson. J. Fish Dis. 11 (1988) 225-235
26. Smail D.A., Bruno D.W., Dear G., McFarlane L.A., and Ross K. Infectious pancreatic necrosis (IPN) virus Sp serotype in farmed Atlantic salmon, Salmo salar L., post-smolts associated with mortality and clinical disease. J. Fish Dis. 15 (1992) 77-83
27. Skjelstad, B., Brun, E., Jensen, I., Johansen, L.H., Midtlyng, P.J., Rimstad, E., Stagg, R., Evensen, Ø., 2003. IPN in Salmonids-A Review. VESO, Oslo, Norway, 115 pp., ISBN 82-91743-17-7.
28. Soliman H., and El-Matbouli M. Reverse transcription loop-mediated isothermal amplification (RT-LAMP) for rapid detection of viral hemorrhagic septicaemia virus (VHS). Vet. Microbiol. 114 (2006) 205-213
29. Suzuki S., Hosono N., and Kusuda R. Detection of aquatic birnavirus gene from marine fish using a combination of reverse transcription- and nested PCR. J. Mar. Biotechnol. 5 (1997) 205-209
30. Taksdal T., Dannevig B.H., and Rimstad E. Detection of infectious pancreatic necrosis (IPN)-virus in experimentally infected Atlantic salmon parr by RT-PCR and cell culture isolation. Bull. Eur. Assoc. Fish Pathol. 21 (2001) 214-219
31. Thai H.T.C., Le M.Q., Vuong C.D., Parida M., Minekawa H., Tsugunori N., Hasebe F., and Morita K. Development and evaluation of a novel loop-mediated isothermal amplification method for rapid detection of sever acute respiratory syndrome Coronavirus. J. Clin. Microbiol. 42 (2004) 1956-1961
32. Wang W.S., Wi Y.L., and Lee J.S. Single-tube, non-interrupted reverse transcription PCR for detection of infectious pancreatic necrosis virus. Dis. Aquat. Org. 28 (1997) 229-233
33. Yoda T., Suzuki Y., Yamazaki K., Sakon N., Kanki M., Aoyama I., and Tsukamoto T. Evaluation and application of reverse transcription loop-mediated isothermal amplification for detection of noroviruses. J. Med. Virol. 79 (2007) 326-334