Genetic diversity of Pakistani cotton cultivars as revealed by simple sequence repeat markers

Communications in Biometry and Crop Science

Volumn 4, Issue 1, 2009, Pages 21-30

  Khan, Azeem I ^a   Fu, Yong Bi ^b   Khan, Iftikhar A ^a  

^a UNIVERSITY OF AGRICULTURE   (Pakistan)

^b SASKATOON RESEARCH CENTRE   (Canada)

Author keywords

Genetic distinctiveness; Genetic diversity; Genetic relationship; Gossypium hirsutum; Simple Sequence Repeat (SSR) marker.

Indexed keywords

GOSSYPIUM HIRSUTUM;

EID: 64649089811     PISSN: None     EISSN: 18960782     Source Type: Journal    
DOI: None     Document Type: Article

References (27)

1. Blenda, A., Scheffler, J., Scheffler, B., Palmer, M., et al. (2006). CMD: a cotton microsatellite database resource for Gossypium genomics. BMC Genomics 7, 132.
2. Bowman, D.T., May, O.L., Calhoun, D.S. (1996). Genetic base of upland cotton cultivars released between 1970 and 1990. Crop Science 36, 577-581.
3. Excoffier, L., Laval, G., Schneider, S. (2005). Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1, 47-50.
4. Federal Bureau of Statistics. (2004). Economic Survey of Pakistan (2003-04). Government of Pakistan.
5. Fu, Y.B. (2000). Effectiveness of bulking procedures in measuring population-pairwise similarity with dominant and co-dominant genetic markers. Theoretical and Applied Genetics 100, 1284-1289.
6. Fu, Y.B. (2006). Genetics redundancy and distinctness of flax germplasm as revealed by RAPD dissimilarity. Plant Genetic Resources 4, 177-124.
7. Fu, Y.B., Peterson, G.W., Morrison, M.J. (2007). Genetic diversity of Canadian soybean cultivars and exotic germplasm revealed by simple sequence repeat markers. Crop Science 47, 1947-1954.
8. Han, Z., Wang, C., Song, X., Guo, W., Gou, J., Li. C., Chen, X., Zhang, T. (2006). Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theoretical and Applied Genetics 112, 430-439.
9. Hussain, A., Ibrahim, M., Tajammal, M.A., Naz, M.A. (2005). Cotton Varieties of Pakistan. Federal Seed Certification and Registration Department. Ministry of Food, Agriculture & Livestock (MINFAL), Government of Pakistan.
10. Iqbal, M.J., Aziz, N., Saeed, N.A., Zafar, Y., Mailk, K.A. (1997). Genetic diversity of some elite cotton varieties by RAPD analysis. Theoretical and Applied Genetics 94, 139-144.
11. Iqbal, M.J., Reddy, O.U.K., El-Zak, K.M., Pepper, A.E. (2001). A genetic bottleneck in the 'evolution under domestication' of upland cotton Gossypium hirsutum L. examined using DNA fingerprinting. Theoretical and Applied Genetics 103, 547-554.
12. Karp, A. (2002). The new genetic era: will it help us in managing genetic diversity? In: Engels, J.M.M., Rao, V.R., Brown, A.H.D., Jackson, M.T. (Eds): Managing Plant Genetic diversity. International Plant Genetic Resources Institute, Rome, Italy, 43-56.
13. Lacape, J.M., Dessauw, D., Rajab, M., Noyer, J.L., Hau, B. (2007). Microsatellite diversity in tetraploid Gossypium germplasm: assembling a highly informative genotyping set of cotton SSRs. Molecular Breeding 19, 45-58.
14. Liu, S., Cantrell, R.G., McCarty, J.C. Jr., Stewart, J.M. (2000). Simple sequence repeat-based assessment of genetic diversity in cotton race stock accessions. Crop Science 40, 1459-1469.
15. Meredith, W.R. Jr. (2000). Cotton yield progress-why has it reached a plateau? Better Crops 84, 6-9.
16. Ministry of Food, Agriculture & Livestock (MINFAL). (1992). Annual Report. Government of Pakistan.
17. Multani, D.S., Lyon, B.R. (1995). Genetic fingerprinting of Australian cotton cultivars with RAPD markers. Genome 38, 1005-1008.
18. Nguyen, T.B., Giband, M., Brottier, P., Risterucci, A.M., Lacape, J.M. (2004). Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theoretical and Applied Genetics 109, 167-175.
19. Rana, M.K., Singh, V.P., Bha, K.V. (2005). Assessment of genetic diversity in upland cotton (Gossypium hirsutum L.) breeding lines by using amplified fragment length polymorphism (AFLP) markers and morphological characteristics. Genetic Resources and Crop Evolution 52, 989-997.
20. Reddy, O.U., Pepper, A.E., Abdurakhmonov, I., Saha, S., Jenkins, J.N., Brooks, T., Bolek, Y., El-Zik, K.M. (2001). New dinucleotide and trinucleotide microsatellite marker resources for cotton genome research. Crop Science 5, 103-113.
21. Rohlf, F.J. (1997). NTSYS-pc 2.1. Numerical taxonomy and multivariate analysis system. Exeter Software, Setauket, NY.
22. Roussel, V., Koenig, J., Bechert, M., Balfourier, F. (2004). Molecular diversity in French bread wheat accessions related to temporal trends and breeding programmes. Theoretical and Applied Genetics 108, 920-930.
23. Sokal, R.R., Michener, C.D. (1958). A statistical method for evaluating systematic relationships. University of Kansas Science Bulletin 38, 1409-1438.
24. Wendel, J.F., Brubaker, C.L. (1993). RFLP diversity in Gossypium hirsutum L. and new insights into the domestication of cotton. American Journal of Botany 80 (SUPPL.), 71.
25. Wendel, J.F., Brubaker, C.L., Percival, A.E. (1992). Genetic diversity in Gossypium hirsutum and the origin of upland cotton. American Journal of Botany 97, 1291-1310.
26. Zhang, H.B., Li, Y., Wang B., Chee, P.W. (2008). Recent advances in cotton genomics. International Journal of Plant Genomics Volume 2008, Article ID 742304 (doi:10.1155/2008/742304).
27. Zhang, J.F., Lu, Y., Cantrell, R.G., Hughs, E. (2005). Molecular marker diversity and field performance in commercial cotton cultivars evaluated in the Southwestern USA. Crop Science 45, 1483-1490.