Microbial availability of different forms of phenanthrene in soils

Environmental Science and Technology

Volumn 43, Issue 6, 2009, Pages 1852-1857

  Yang, Yu ^a,b   Hunter, Wesley ^b   Tao, Shu ^a   Gan, Jay ^b  

^a PEKING UNIVERSITY   (China)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL AVAILABILITIES; CORRELATION ANALYSIS; DEGRADATION RATES; EQUILIBRIUM DISTRIBUTIONS; FREELY DISSOLVED CONCENTRATIONS; HYDROPHOBIC ORGANIC COMPOUNDS; KINETICS ANALYSIS; MICROBIAL DEGRADATIONS; POLYDIMETHYLSILOXANE PDMS; POROSITY PROPERTIES; REMOVAL PROCESS; SOIL CONDITIONS; SOIL SURFACES;

ANTHRACENE; BIODEGRADATION; BIOLOGICAL MATERIALS; CHEMICAL COMPOUNDS; DEGRADATION; DISSOLUTION; FIRE HAZARDS; MINERALOGY; ORGANIC CARBON; REGRESSION ANALYSIS; SILICONES;

SOILS;

DIMETICONE; ORGANIC CARBON; PHENANTHRENE;

BIODEGRADATION; CONCENTRATION (COMPOSITION); DEGRADATION; HYDROPHOBICITY; ORGANIC CARBON; ORGANIC COMPOUND; PAH; PHENANTHRENE;

ARTICLE; CONTROLLED STUDY; KINETICS; MICROBIAL DEGRADATION; SOIL;

BIODEGRADATION, ENVIRONMENTAL; PHENANTHRENES; SOIL; SOIL MICROBIOLOGY; SOIL POLLUTANTS;

BACTERIA (MICROORGANISMS);

EID: 64549121455     PISSN: 0013936X     EISSN: 15205851     Source Type: Journal    
DOI: 10.1021/es802966z     Document Type: Article

References (49)

1. Semple, K. T.; Doick, K. J.; Jones, K. C.; Burauel, P.; Craven, A.; Harms, H. Defining bioavailability and bioaccessibility of contaminated soil and sediment is complicated. Environ. Sci. Technol. 2004, 38, 228A-231A.
2. Reichenberg, F.; Mayer, P. Two complementary sides of bioavailability: Accessibility and chemical activity of organic contaminants in sediments and soils. Environ. Toxicol. Chem. 2006, 25, 1239-1245.
3. Luthy, R. G.; Aiken, G. R.; Brusseau, M. L.; Cunningham, S. D.; Gschwend, P. M.; Pignatello, J. J.; Reinhard, M.; Traina, S. J.; Weber, W. J.; Westall, J. C. Sequestration of hydrophobic organic contaminants by geosorbents. Environ. Sci. Technol. 1997, 31, 3341-3347.
4. Nam, K.; Chung, N.; Alexander, M. Relationship between organic matter content of soil and the sequestration of phenanthrene. Environ. Sci. Technol. 1998, 32, 3785-3788.
5. Bouchez, M.; Blanchet, D.; Vandecasteele, J. P. Substrate availability in phenanthrene biodegradation: Transfer mechanism and influence on metabolism. Appl Microbiol. Biotechnol. 1995, 43, 952-960.
6. Feng, Y. C.; Park, J. H.; Voice, T. C.; Boyd, S. A. Bioavailability of soil-sorbed biphenyl to bacteria. Environ. Sci. Technol. 2000, 34, 1977-1984.
7. Wick, L. Y.; Colangelo, T.; Harms, H. Kinetics of mass transfer limited bacterial growth on solid PAHs. Environ. Sci. Technol. 2001, 35, 354-361.
8. Uyttebroek, M.; Ortega-Calvo, J. J.; Breugelmans, P.; Springael, D. Comparison of mineralization of solid-sorbed phenanthrene by polycyclic aromatic hydrocarbon (PAH)-degrading Mycobacterium spp. and Sphingomonas spp. Appl. Microbiol. Biotechnol. 2006, 72, 829-836.
9. Harms, H.; Bosma, T. N. P. Mass transfer limitation of microbial growth and pollutant degradation. J. Ind. Microbiol. Biot. 1997, 18, 97-105.
10. Guerin, W. F.; Boyd, S. A. Differential bioavailability of soil-sorbed naphthalene to 2 bacterial species. Appl. Environ. Microb. 1992, 58, 1142-1152.
11. Crocker, F. H.; Guein, W. F.; Boyd, S. A. Bioavailability of naphthalene sorbed to cationic surfactant-modified smectite clay. Environ. Sci. Technol. 1995, 29, 2953-2958.
12. Guerin, W. F.; Boyd, S. A. Bioavailability of naphthalene associated with natural and synthetic sorbents. Water. Res. 1997, 31, 1504-1512.
13. Wu, G. Y.; Feng, Y. C.; Boyd, S. A. Characterization of bacteria capable of degrading soil-sorbed biphenyl. Bull. Environ. Contam. Toxicol. 2003, 71, 768-775.
14. Park, J. H.; Feng, Y. C.; Cho, S. Y.; Voice, T. C.; Boyd, S. A. Sorbed atrazine shifts into non-desorbable sites of soil organic matter during aging. Water. Res. 2004, 38, 3881-3892.
15. Scribner, D. E.; Benzing, T. R.; Boyd, S. A. Sorption and bioavailability of aged simazine residues in soil from a continous corn field. J. Environ. Qual. 1992, 21, 115-120.
16. Hatzinger, P. B.; Alexander, M. Effect of aging of chemicals in soil on their biodegradability and extractability. Environ. Sci. Technol. 1995, 29, 537-545.
17. Sharer, M.; Park, J. H.; Voice, T. C.; Boyd, S. A. Time dependence of chlorobenzene sorption/desorption by soils. Soil. Sci. Soc. Am. J. 2003, 67, 1740-1745.
18. Sharer, M.; Park, J. H.; Voice, T. C.; Boyd, S. A. Aging effects on the sorption-desorption characteristics of anthropogenic organic compounds in soil. J. Environ. Qual. 2003, 32, 1385-1392.
19. Cornelissen, G.; Gustafsson, O.; Bucheli, T. D.; Jonker, M. T. O.; Koelmans,AA.;VanNoort, P. CM. Extensive sorption of organic compounds to black carbon, coal, and kerogen in sediments and soils: Mechanisms and consequences for distribution, bioaccumulation, and biodegradation. Environ. Sci. Technol. 2005, 39, 6881-6895.
20. Ghosh, U. The role of black carbon in influencing availability of PAHs in sediments. Hum. Ecol. Risk Assess. 2007, 13, 276-285.
21. Di Toro, D. M.; Zarba, C. S.; Hansen, D. J.; Berry, W. J.; Swartz, R. C.; Cowan, C. E.; Pavlou, S. P.; Allen, H. E.; Thomas, N. A.; Paquin, P. R. Technical basis for establishing sediment quality criteria for nonionic organic chemicals using equilibrium partitioning. Environ. Toxicol. Chem. 1991, 10, 1541-1583.
22. You, J.; Landrum, P. F.; Lydy, M. J. Comparison of chemical approaches for assessing bioavailability of sediment-associated contaminants. Environ. Sci. Technol. 2006, 40, 6348-6353.
23. Mayer, P.; Vaes, W. H. J.; Wijnker, F.; Legierse, K. C. H. M.; Kraaij, R. H.; Tolls, J.; Hermens, J. L. M. Sensing dissolved sediment porewater concentrations of persistent and bioac-cumulative pollutants using disposable solid-phase microex-traction fibers. Environ. Sci. Technol. 2000, 34, 5177-5183.
24. Ter Laak, T. L.; Barendregt, A.; Hermens, J. L. M. Freely dissolved pore water concentrations and sorption coefficients of PAHs in spiked aged, and field-contaminated soils. Environ. Sci. Technol. 2006, 40, 2184-2190.
25. Styrishave, B.; Mortensen, M.; Krogh, P. H.; Andersen, O.; Jensen, J. Solid-phase microextraction (SPME) as a tool to predict the bioavailahility and toxicity of pyrene to the springtail Folsomia candida, under various soil conditions. Environ. Sci. Technol. 2008, 42, 1332-1336.
26. Xu, Y.; Spurlock, F.; Wang, Z.; Gan, J. Comparison of five methods for measuring sediment toxicity of hydrophobic contaminants. Environ. Sci. Technol. 2007, 41, 8394-8399.
27. Pan, B.; Xing, B. S.; Tao, S.; Liu, W. X.; Lin, X. M.; Xiao, Y.; Dai, H. C.; Zhang, X. M.; Zhang, Y. X.; Yuan, H. S. Effect of physical forms of soil organic matter on phenanthrene sorption. Chemo-sphere. 2007, 68, 1262-1269.
28. Ismail, I.; Rodgers, S. L. Comparisons between fullerene and forms of well-known carbons. Carbon 1992, 30, 229-239.
29. Huang, L. Y.; Boving, T. B.; Xing, B. S. Sorption of PAHs by aspen wood fibers as affected by chemical alterations. Environ. Sci. Technol. 2006, 40, 3279-3284.
30. Yang, K.; Zhu, L. Z.; Xing, B. S. Adsorption of polycyclic aromatic hydrocarbons by carbon nanomaterials. Environ. Sci. Technol. 2006, 40, 1855-1861.
31. Moody, J. D.; Doerge, D. R.; Freeman, J. P.; Cerniglia, C. E. Degradation of biphenyl by Mycobacterium sp strain PYR-1. Appl. Microbiol. Biotechnol. 2002, 58, 364-369.
32. Kim, S. J.; Kweon, O.; Jones, R. C.; Freeman, J. P.; Edmondson, R. D.; Cerniglia, C. E. Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology. J. Bacteriol. 2007, 189, 464-472.
33. Doick, K. J.; Semple, K. T. The effect of soil: water ratios on the mineralisation of phenanthrene: LNAPL mixtures in soil. FEMS Microb. Lett 2003, 220, 29-33.
34. Uyttebroek, M.; Breugelmans, P.; Janssen, M.; Wattiau, P.; Joffe, B.; Karlson, U.; Ortega-Calvo, J. J.; Bastiaens, L.; Ryngaert, A.; Hausner, M.; Springael, D. Distribution of the Mycobacterium community and polycyclic aromatic hydrocarbons (PAHs) among different size fractions of along-term PAH-contaminated soil. Environ. Microbiol. 2006, 8, 836-847.
35. Oomen, A. G.; Mayer, P.; Tolls, J. Nonequilibrium solid phase microextraction for determination of the freely dissolved concentration of hydrophohic organic compounds: Matrix effects and limitations. Anal. Chem. 2000, 72, 2802-2808.
36. Mayer, P.; Karlson, U.; Christensen, P. S.; Johnsen, A. R.; Trapp, S. Quantifying the effect of medium composition on the diffusive mass transfer of hydrophobic organic chemicals through unstirred boundary layers. Environ. Sci. Technol. 2005, 39, 6123-6129.
37. Hawthorne, S. B.; Grabanski, C. B.; Miller, D. J.; Kreitinger, J. P. Solid-phase microextraction measurement of parent and alkyl polycyclic aromatic hydrocarbons in milliliter sediment pore water samples and determination of K-DOC values. Environ. Sci. Technol. 2005, 39, 2795-2803.
38. Zhang, W. X.; Bouwer, E. J.; Ball, W. P. Bioavailability of hydrophobic organic contaminants: Effects and implications of sorption-related mass transfer on bioremediation. Ground Water Monit. Rev. 1998, 18, 126-138.
39. Luthy, R. G.; Aiken, G. R.; Brusseau, M. L.; Cunningham, S. D.; Gschwend, P. M.; Pignatello, J. J.; Reinhard, M.; Traina, S. J.; Weber, W. J.; Westall, J. C. Sequestration of hydrophobic organic contaminants by geosorbents. Environ. Sci. Technol. 1997, 31, 3341-3347.
40. Jonker, M. T. O.; Van Der Heijden, S. A.; Kreitinger, J. P.; Hawthorne, S. B. Predicting PAH bioaccumulation and toxicity in earthworms exposed to manufactured gas plant soils with solid-phase microex-traction. Environ. Sci. Technol. 2007, 41, 7472-7478.
41. Cornelissen, G.; Rigterink, H.; Ten Hulscher, D. E. M.; Vrind, B. A.; Van Noort, P. C. M. A. simple Tenax extraction method to determine the availability of sediment-sorbed organic compounds. Environ. Toxicol. Chem. 2001, 20, 706-711.
42. Shor, L. M.; Rockne, K. J.; Taghon, G. L.; Young, L. Y.; Kosson, D. S. Desorption kinetics for field-aged polycyclic aromatic hydrocarbons from sediments. Environ. Sci. Technol. 2003, 37, 1535-1544.
43. Xu, Y. P.; Gan, J.; Wang, Z. J.; Spurlock, F. Effect of aging on desorption kinetics of sediment-associated pyrethroids. Environ. Toxicol. Chem. 2008, 27, 1293-1301.
44. Johnsen, A. R.; Wick, L. Y.; Harms, H. Principles of microbial PAH-degradation in soil. Environ. Pollut. 2005, 133, 71-84.
45. Gomez-Lahoz, C.; Ortega-Calvo, J. J. Effect of slow desorption on the kinetics of biodegradation of polycyclic aromatic hydrocarbons. Environ. Sci. Technol. 2005, 39, 1535-1544.
46. Wattiau, P.; Springael, D.; Agathos, S. N.; Wuertz, S. Use of the pAL5000 replicon in PAH-degrading Mycobacteria: Application for strain labelling and promoter probing. Appl. Microbiol. Biotechnol. 2002, 59, 700-705.
47. Pignatello, J. J.; Xing, B. S. Mechanisms of slow sorption of organic chemicals to natural particles. Environ. Sci. Technol. 2005, 30, 1-11.
48. Bogan, B. W.; Sullivan, W. R.; Cruz, K. H.; Paterek, J. R.; Ravikovitch, P. I.; Neimark, A. V. "Humic coverage index" as a determining factor governing strain-specific hydrocarbon availability to contaminant- degradingbacteriainsoils. Environ. Sci. Technol. 2003, 37, 5168-5174.
49. Zimmerman, A. R.; Chorover, J.; Goyne, K. W.; Brantley, S. L. Protection of mesopore-adsorbed organic matter from enzymatic degradation. Environ. Sci. Technol. 2004, 38, 4542-4548.