Quantitative trait loci mapping of flag-leaf ligule length in rice and alignment with ZmLG1 gene

Journal of Integrative Plant Biology

Volumn 51, Issue 4, 2009, Pages 360-366

  Zeng, Dali ^a   Hu, Jiang ^a   Dong, Guojun ^a   Liu, Jian ^a   Zeng, Longjun ^a   Zhang, Guangheng ^a   Guo, Longbiao ^a   Zhou, Yihua ^b   Qian, Qian ^a  

^a CHINA NATIONAL RICE RESEARCH INSTITUTE   (China)

^b INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

Author keywords

Double haploid population; In silico mapping; Ligule length of flag leaf; Quantitative trait loci; Rice

Indexed keywords

VEGETABLE PROTEIN;

CHROMOSOME; MAPPING METHOD; MOLECULAR ANALYSIS; QUANTITATIVE ANALYSIS; RICE;

AMINO ACID SEQUENCE; ARTICLE; BIOLOGY; CHEMISTRY; CHROMOSOME MAP; GENE LOCUS; GENETICS; HAPLOIDY; HISTOLOGY; MAIZE; MOLECULAR GENETICS; PLANT CHROMOSOME; PLANT GENE; PLANT LEAF; QUANTITATIVE TRAIT LOCUS; RICE; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; COMPUTATIONAL BIOLOGY; GENES, PLANT; GENETIC LOCI; HAPLOIDY; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PLANT LEAVES; PLANT PROTEINS; QUANTITATIVE TRAIT LOCI; SEQUENCE ALIGNMENT; ZEA MAYS;

JAPONICA; ZEA MAYS;

EID: 64149109084     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/j.1744-7909.2008.00803.x     Document Type: Article

References (46)

1. Ahn S, Tanksley SD (1993). Comparative linkage maps of the rice and maize genomes. Proc. Natl. Acad. Sci. USA 90, 7980-7984.
2. Akiko K, Sadequr R, Yoshinori U, Li ZY, Yasuhiko M, Maki Y et al. (2005). Complementation of sugary-1 phenotype in rice endosperm with the wheat isoamylase1 gene supports a direct role for isoamylase1 in amylopectin biosynthesis. Plant Physiol. 137, 43-56.
3. Becraft PW, Bongard-Pierce DK, Sylvester AW, Poethig RS, Freeling M (1990). The liguleless-1 gene acts tissue specifically in maize leaf development. Dev. Biol. 141, 220-232.
4. Becraft PW, Freeling M (1991). Sectors of liguleless-1 tissue interrupt an inductive signal during maize leaf development. Plant Cell 3, 801-807.
5. Bennetzen JL, Freeling M (1993). Grasses as a single genetic system: genome composition, colinearity and compatibility. Trends Genet. 9, 259-260.
6. Berhan AM, Hulbert SH, Butler LG, Bennetzen JL (1993). Structure and evolution of the genomes of Sorghum bicolor and Zea mays. Theor. Appl. Genet. 86, 598-604.
7. Binelli G, Gianfranceschi L, Pè ME, Taramino G, Busso C, Stenhouse J et al. (1992). Similarity of maize and sorghum genomes as revealed by maize RFLP probes. Theor. Appl. Genet. 84, 10-16.
8. Birkenbihl RP, Jach G, Saedler H, Huijser P (2005). Functional dissection of the plant-specific SBP-domain: Overlap of the DNA-binding and nuclear localization domains. J. Mol. Biol. 352, 585-596.
9. Borre AVD, Watson L (1994). The infrageneric classification of Eragrostis (Poaceae). Taxon 43, 383-422.
10. Cheng KS, Zhou JW, Lu YX, Luo J, Huang DW, Liu GR (1984). Studies on the indigenous rice in Yunnan and their utilization II. A revised classification of Asian culture rice. Acta Agron. Sin. 10, 271 (in Chinese).
11. Ding Y (1949). The origin of rice in China. J. Agron. Zhongshan Univ. 7, 11-24 (in Chinese).
12. Ding Y (1961). Rice Cultivation in China. Agricultural Publishing Company, Beijing (in Chinese).
13. Ding Y (1983). Classification of Chinese Culture Rice. Anthology of Ding Ying's Paper in Rice. Agricultural Publishing Company, Beijing (in Chinese).
14. Dong GJ, Hiroshi F, Teng S, Hu XM, Zeng DL, Guo LB et al. (2003). QTL analysis of flag leaf angle in rice. Chin. J. Rice Sci. 17, 219-222 (in Chinese).
15. Dunford RP, Kurata N, David AL, Tracy AM, Yuzo M, Moore G (1995). Conservation of fine-scale DNA marker order in the genomes of rice and the Triticeae. Nucleic Acids Res. 23, 2724-2728.
16. Foster T, Veit B, Hake S (1999). Mosaic analysis of the dominant mutant, Gnarley1-R, reveals distinct lateral and transverse signaling pathways during maize leaf development. Development 126, 305-313.
17. Fowler JE, Freeling M (1996). Genetic analysis of mutations that alter cell fates in maize leaves: Dominant liguleless mutations. Dev. Genet. 18, 198-222.
18. Harper L, Freeling M (1996). Interactions of liguleless1 and liguleless2 function during ligule induction in maize. Genetics 144, 1871-1882.
19. Hsiao C, Chatterton NJ, Asay KH, Jensen KB (1993). Phylogenetic relationships of 10 grass species: An assessment of phylogenetic utility of the internal transcribed spacer region in nuclear ribosomal DNA in monocots. Genome 37, 112-120.
20. Jones JW (1933). Inheritance of characters in rice. J. Agric. Res. 47, 771-782.
21. Josef H (1972). A note on the infraspecific classification of Helictotrichon desertorum (Less.) Nevskij. Folia Geobot. Phytotax. Praha. 7, 419-421.
22. Kato S, Kosaka H, Hara S (1928). On the affinity of rice varieties as shown by the fertility of rice plants. Centr. Agric. Inst. Kyushu Imp. Univ. 2, 241-276.
23. Klein J, Saedler H, Huijser P (1996). A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet. 250, 7-16.
24. Kunihiro Y, Qian Q, Sato H, Teng S, Zeng DL, Fujimoto K et al. (2002). QTL analysis of sheath blight resistance in rice (Oryza sativa L.). Chin. J. Genet. 29, 50-55 (in Chinese).
25. Laurie DA, Donoughue LSO, Bennett MD (1990). Wheat × maize and other wide sexual hybrids: Their potential for crop improvement and genetic manipulation. In: Gustafson JP, ed. Genetic Manipulation in Plant Development II. Plenum Press, New York. pp. 95-106.
26. Liu XQ, Lin F, Wang L, Pan QH (2007). The in silico map-based cloning of Pi36, a rice coiled-coil-nucleotide-binding site-leucine-rich repeat gene that confers race-specific resistance to the blast fungus. Genetics 176, 2541-2549.
27. Maekawa MI, Takamure, Kinoshita T (1991). Gene mapping of some morphological traits and chlorophyll deficiency in rice. J. Rice Genet. II. IRRI, Manila, Philippines. pp. 111-120.
28. McCouch SR, Cho YG, Yano M, Paul E (1997). Report on QTL nomenclature. Rice Genet. Newslett. 14, 11.
29. Moore G, Devos KM, Wang Z, Gale MD (1995a). Grasses, line up and form a circle. Curr. Biol. 5, 737-739.
30. Moore G, Foote T, Helentjaris T, Devos K, Kurata N, Gale M (1995b). Was there a single ancestral cereal chromosome? Trends Genet. 11, 81-82.
31. Moreno MA, Harper LC, Krueger RW, Dellaporta SL, Freeling M (1997). Liguleless1 encodes a nuclear-localized protein required for induction of ligules and auricles during maize leaf organogenesis. Genes Dev. 11, 616-628.
32. Morinaga T, Fukushima E (1943). Heritable characters in rice I: Abnormal mutant characters and their mode of inheritance. Sci. Bull. Fac. Agric. Kushu Univ. 10, 30-339.
33. Muehlbauer GJ, Fowler JE, Freeling M (1997). Sectors expressing the homeobox gene liguleless3 implicate a time-dependent mechanism for cell fate acquisition along the proximal-distal axis of the maize leaf. Development 124, 5097-5106.
34. Oka HI (1958). Intervarietal variation and classification of cultivated rice. Indian J. Genet. Plant Breed. 18, 79-89.
35. Osmont KS, Jesaitis LA, Freeling M (2003). The extended auricle1 (eta1) gene is essential for the genetic network controlling postinitiation maize leaf development. Genetics 165, 1507-1519.
36. Qian Q, He P, Zheng XW, Chen Y, Zhu LH (2000). Genetic analysis of morphological index and its related taxonomic traits for classification of indica/japonica rice. Sci. China (Series C) 43, 113-119.
37. Quan DX, Nan ZH, Yan YF, Hou LG, Wei CQ (2003). Study on the inheritance of new japonica germplasm without auricle, paraphyll and pulvinus. J. Jilin Agric. Sci. 28(6), 11-12 (in Chinese).
38. Saito A, Yano M, Kishimoto N, Nakagahra M, Yoshimura A, Saito K et al. (1991). Linkage map of restriction fragment length polymorphism loci in rice. J. Jpn. J. Breed. 41, 665-670.
39. Sogawa K, Qian Q, Zeng DL, Hu J, Zeng LJ (2005). Differential expression of whitebacked planthopper resistance in the japonica/indica doubled haploid rice population under field evaluation and seedbox screening test. Rice Sci. 12, 63-67.
40. Sogawa K, Sun ZX, Qian Q, Zeng DL (2004). Phenotypic expression of whitebacked planthopper resistance in the newly established japonica/ indica doubled haploid rice population. Rice Sci. 11, 155-160.
41. Sylvester AW, Cande WZ, Freeling M (1990). Division and differentiation during normal and liguleless-1 maize leaf development. Development 110, 985-1000.
42. Vollbrecht E, Veit B, Sinha N, Hake S (1991). The developmental gene knotted-1 is a member of a maize homeobox gene family. Nature 350, 241-243.
43. Walsh J, Waters CA, Freeling M (1998). The maize gene liguleless2 encodes a basic leucine zipper protein involved in the establishment of the leaf blade-sheath boundary. Genes Dev. 12, 208-218.
44. Yan L, Loukoianov A, Tranquilli G, Helguera M, Fahima T, Dubcovsky J (2003). Positional cloning of the wheat vernalization gene VRN1. Proc. Natl. Acad. Sci. USA 100, 6263-6268.
45. Zhang GH, Zeng DL, Hu SK, Su Y, Aijia LT, Guo LB et al. (2006). QTL analysis of traits concerned submergence tolerance at seedling stage in rice (Oryza sativa L.). Acta Agron. Sin. 32, 1280-1286 (in Chinese).
46. Zwick MS, Islam-Faridi MN, Czeschin DG Jr, Wing RA, Hart GE, Stelly DM et al. (1998). Physical mapping of the liguleless linkage group in sorghum bicolor using rice RFLP-selected sorghum BACs. Genetics 148, 1983-1992.