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Volumn 55, Issue 4, 2009, Pages 774-785

Interindividual and interethnic variation in genomewide gene expression: Insights into the biological variation of gene expression and Clinical implications

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DISEASE MARKER; ETHNIC DIFFERENCE; ETHNICITY; GENE; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENETIC ANALYSIS; GENETIC MODEL; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; HAPLOTYPE MAP; HUMAN; HUMAN CELL; SAMPLE; CELL LINE; GENE EXPRESSION REGULATION; GENETICS; HUMAN GENOME; LYMPHOCYTE; METABOLISM; MUTATION;

EID: 64149083208     PISSN: 00099147     EISSN: 15308561     Source Type: Journal    
DOI: 10.1373/clinchem.2008.119107     Document Type: Article
Times cited : (18)

References (39)
  • 1
    • 18044371615 scopus 로고    scopus 로고
    • Use of CEPH and non-CEPH lymphoblast cell lines in pharmacogenetic stud- ies
    • Shukla SJ, Dolan ME. Use of CEPH and non-CEPH lymphoblast cell lines in pharmacogenetic stud- ies. Pharmacogenomics 2005;6:303-10.
    • (2005) Pharmacogenomics , vol.6 , pp. 303-310
    • Shukla, S.J.1    Dolan, M.E.2
  • 2
    • 42649086788 scopus 로고    scopus 로고
    • From gene expression to disease risk
    • Dermitzakis ET. From gene expression to disease risk. Nat Genet 2008;40:492-3.
    • (2008) Nat Genet , vol.40 , pp. 492-493
    • Dermitzakis, E.T.1
  • 3
    • 12244283722 scopus 로고    scopus 로고
    • Messenger RNA expression of major histocompatibility complex class II genes in whole blood from septic shock patients
    • discussion 236-7
    • Pachot A, Monneret G, Brion A, Venet F, BohéJ, Bienvenu J, et al. Messenger RNA expression of major histocompatibility complex class II genes in whole blood from septic shock patients. Crit Care Med 2005;33:31-8; discussion 236-7.
    • (2005) Crit Care Med , vol.33 , pp. 31-38
    • Pachot, A.1    Monneret, G.2    Brion, A.3    Venet, F.4    Bohé, J.5    Bienvenu, J.6
  • 5
    • 1642533454 scopus 로고    scopus 로고
    • Quan- titative tissue factor gene expression analysis in whole blood: Development and evaluation of a real-time PCR platform
    • Mueller J, Rox JM, Madlener K, Poetzsch B. Quan- titative tissue factor gene expression analysis in whole blood: development and evaluation of a real-time PCR platform. Clin Chem 2004;50: 245-7.
    • (2004) Clin Chem , vol.50 , pp. 245-247
    • Mueller, J.1    Rox, J.M.2    Madlener, K.3    Poetzsch, B.4
  • 6
    • 43449103648 scopus 로고    scopus 로고
    • Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients
    • Russom A, Sethu P, Irimia D, Mindrinos MN, Calvano SE, Garcia I, et al. Microfluidic leukocyte isolation for gene expression analysis in critically ill hospitalized patients. Clin Chem 2008;54:891-900.
    • (2008) Clin Chem , vol.54 , pp. 891-900
    • Russom, A.1    Sethu, P.2    Irimia, D.3    Mindrinos, M.N.4    Calvano, S.E.5    Garcia, I.6
  • 7
    • 33846405255 scopus 로고    scopus 로고
    • Gene-expression patterns in whole blood identify subjects at risk for recurrent tuberculosis
    • Mistry R, Cliff JM, Clayton CL, Beyers N, Mo- hamed YS, Wilson PA, et al. Gene-expression patterns in whole blood identify subjects at risk for recurrent tuberculosis. J Infect Dis 2007;195: 357-65.
    • (2007) J Infect Dis , vol.195 , pp. 357-365
    • Mistry, R.1    Cliff, J.M.2    Clayton, C.L.3    Beyers, N.4    Mo- hamed, Y.S.5    Wilson, P.A.6
  • 8
    • 33847408050 scopus 로고    scopus 로고
    • Gene expression patterns in blood leukocytes discriminate patients with acute infections
    • Ramilo O, Allman W, Chung W, Mejias A, Ardura M, Glaser C, et al. Gene expression patterns in blood leukocytes discriminate patients with acute infections. Blood 2007;109:2066-77.
    • (2007) Blood , vol.109 , pp. 2066-2077
    • Ramilo, O.1    Allman, W.2    Chung, W.3    Mejias, A.4    Ardura, M.5    Glaser, C.6
  • 10
    • 33847643776 scopus 로고    scopus 로고
    • Nolan T, Hands RE, Bustin SA. Quantification of mRNA using real-time RT-PCR. Nat Protoc 2006; 1:1559-82.
    • Nolan T, Hands RE, Bustin SA. Quantification of mRNA using real-time RT-PCR. Nat Protoc 2006; 1:1559-82.
  • 11
    • 33645452683 scopus 로고    scopus 로고
    • Quantification of mRNA in whole blood by assessing recovery of RNA and efficiency of cDNA synthesis
    • Mitsuhashi M, Tomozawa S, Endo K, Shinagawa A. Quantification of mRNA in whole blood by assessing recovery of RNA and efficiency of cDNA synthesis. Clin Chem 2006;52:634-42.
    • (2006) Clin Chem , vol.52 , pp. 634-642
    • Mitsuhashi, M.1    Tomozawa, S.2    Endo, K.3    Shinagawa, A.4
  • 12
    • 33745439811 scopus 로고    scopus 로고
    • Sensitive and quantitative measurement of gene expression di- rectly from a small amount of whole blood
    • Zheng Z, Luo Y, McMaster GK. Sensitive and quantitative measurement of gene expression di- rectly from a small amount of whole blood. Clin Chem 2006;52:1294-302.
    • (2006) Clin Chem , vol.52 , pp. 1294-1302
    • Zheng, Z.1    Luo, Y.2    McMaster, G.K.3
  • 13
    • 39749133586 scopus 로고    scopus 로고
    • Characterization of globin RNA interference in gene expression profiling of whole-blood samples
    • Wright C, Bergstrom D, Dai H, Marton M, Morris M, Tokiwa G, et al. Characterization of globin RNA interference in gene expression profiling of whole-blood samples. Clin Chem 2008;54:396-405.
    • (2008) Clin Chem , vol.54 , pp. 396-405
    • Wright, C.1    Bergstrom, D.2    Dai, H.3    Marton, M.4    Morris, M.5    Tokiwa, G.6
  • 14
    • 34249914273 scopus 로고    scopus 로고
    • Effects of storage, RNA extraction, GeneChip type, and donor sex on gene expression profiling of human whole blood
    • Kim SJ, Dix DJ, Thompson KE, Murrell RN, Schmid JE, Gallagher JE, Rockett JC. Effects of storage, RNA extraction, GeneChip type, and donor sex on gene expression profiling of human whole blood. Clin Chem 2007;53:1038-45.
    • (2007) Clin Chem , vol.53 , pp. 1038-1045
    • Kim, S.J.1    Dix, D.J.2    Thompson, K.E.3    Murrell, R.N.4    Schmid, J.E.5    Gallagher, J.E.6    Rockett, J.C.7
  • 15
    • 34147194552 scopus 로고    scopus 로고
    • Preanalytical mRNA stabilization of whole bone marrow samples
    • Langebrake C, Gunther K, Lauber J, Reinhardt D. Preanalytical mRNA stabilization of whole bone marrow samples. Clin Chem 2007;53:587-93.
    • (2007) Clin Chem , vol.53 , pp. 587-593
    • Langebrake, C.1    Gunther, K.2    Lauber, J.3    Reinhardt, D.4
  • 16
    • 23444450270 scopus 로고    scopus 로고
    • Collection and storage of human blood cells for mRNA expression profiling: A 15-month stability study
    • Marteau JB, Mohr S, Pfister M, Visvikis-Siest S. Collection and storage of human blood cells for mRNA expression profiling: a 15-month stability study. Clin Chem 2005;51:1250-2.
    • (2005) Clin Chem , vol.51 , pp. 1250-1252
    • Marteau, J.B.1    Mohr, S.2    Pfister, M.3    Visvikis-Siest, S.4
  • 17
    • 0031803416 scopus 로고    scopus 로고
    • Biological variation of cystatin C: Implications for the assessment of glomerular filtration rate
    • Keevil BG, Kilpatrick ES, Nichols SP, Maylor PW. Biological variation of cystatin C: implications for the assessment of glomerular filtration rate. Clin Chem 1998;44:1535-9.
    • (1998) Clin Chem , vol.44 , pp. 1535-1539
    • Keevil, B.G.1    Kilpatrick, E.S.2    Nichols, S.P.3    Maylor, P.W.4
  • 18
    • 0032916805 scopus 로고    scopus 로고
    • Within- and between-subject vari- ation in commonly measured anthropometric and biochemical variables
    • Widjaja A, Morris RJ, Levy JC, Frayn KN, Manley SE, Turner RC. Within- and between-subject vari- ation in commonly measured anthropometric and biochemical variables. Clin Chem 1999;45: 561-6.
    • (1999) Clin Chem , vol.45 , pp. 561-566
    • Widjaja, A.1    Morris, R.J.2    Levy, J.C.3    Frayn, K.N.4    Manley, S.E.5    Turner, R.C.6
  • 19
    • 34249864812 scopus 로고    scopus 로고
    • Quality- controlled measurement methods for quantifica- tion of variations in transcript abundance in whole blood samples from healthy volunteers
    • Peters EH, Rojas-Caro S, Brigell MG, Zahorchak RJ, des Etages SA, Ruppel PL, et al. Quality- controlled measurement methods for quantifica- tion of variations in transcript abundance in whole blood samples from healthy volunteers. Clin Chem 2007;53:1030-7.
    • (2007) Clin Chem , vol.53 , pp. 1030-1037
    • Peters, E.H.1    Rojas-Caro, S.2    Brigell, M.G.3    Zahorchak, R.J.4    des Etages, S.A.5    Ruppel, P.L.6
  • 21
    • 27644482314 scopus 로고    scopus 로고
    • Mapping determinants of human gene expression by regional and genome- wide association
    • Cheung VG, Spielman RS, Ewens KG, Weber TM, Morley M, Burdick JT. Mapping determinants of human gene expression by regional and genome- wide association. Nature 2005;437:1365-9.
    • (2005) Nature , vol.437 , pp. 1365-1369
    • Cheung, V.G.1    Spielman, R.S.2    Ewens, K.G.3    Weber, T.M.4    Morley, M.5    Burdick, J.T.6
  • 22
    • 33846978695 scopus 로고    scopus 로고
    • Relative impact of nucleotide and copy number variation on gene expression phenotypes
    • Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, Thorne N, et al. Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science 2007;315:848-53.
    • (2007) Science , vol.315 , pp. 848-853
    • Stranger, B.E.1    Forrest, M.S.2    Dunning, M.3    Ingle, C.E.4    Beazley, C.5    Thorne, N.6
  • 23
    • 28444445926 scopus 로고    scopus 로고
    • Vienna: R Foundation for Statistical Computing;, Available at
    • R Development Core Team. R: a language and environment for statistical computing [software]. Vienna: R Foundation for Statistical Computing; 2005. Available at: http://www.r-project.org/.
    • (2005) R: A language and environment for statistical computing [software]
  • 24
    • 42949176212 scopus 로고    scopus 로고
    • Menges T, Konig IR, Hossain H, Little S, Tchatal- bachev S, Thierer F, et al. Sepsis syndrome and death in trauma patients are associated with variation in the gene encoding tumor necrosis factor. Crit Care Med 2008;36:1456-62, e1-6.
    • Menges T, Konig IR, Hossain H, Little S, Tchatal- bachev S, Thierer F, et al. Sepsis syndrome and death in trauma patients are associated with variation in the gene encoding tumor necrosis factor. Crit Care Med 2008;36:1456-62, e1-6.
  • 26
    • 41649086294 scopus 로고    scopus 로고
    • Gene-expression profiling of gram-positive and gram-negative sepsis in criti- cally ill patients
    • Tang BM, McLean AS, Dawes IW, Huang SJ, Cowley MJ, Lin RC. Gene-expression profiling of gram-positive and gram-negative sepsis in criti- cally ill patients. Crit Care Med 2008;36:1125-8.
    • (2008) Crit Care Med , vol.36 , pp. 1125-1128
    • Tang, B.M.1    McLean, A.S.2    Dawes, I.W.3    Huang, S.J.4    Cowley, M.J.5    Lin, R.C.6
  • 27
    • 33749128507 scopus 로고    scopus 로고
    • Circulating cell-free DNA in plasma/serum of lung cancer patients as a potential screening and prognostic tool
    • Pathak AK, Bhutani M, Kumar S, Mohan A, Gule- ria R. Circulating cell-free DNA in plasma/serum of lung cancer patients as a potential screening and prognostic tool. Clin Chem 2006;52:1833-42.
    • (2006) Clin Chem , vol.52 , pp. 1833-1842
    • Pathak, A.K.1    Bhutani, M.2    Kumar, S.3    Mohan, A.4    Gule- ria, R.5
  • 28
    • 34347376321 scopus 로고    scopus 로고
    • Optimal markers for real-time quantitative reverse transcription PCR detection of circulating tumor cells from melanoma, breast, colon, esophageal, head and neck, and lung can- cers
    • Xi L, Nicastri DG, El-Hefnawy T, Hughes SJ, Luke- tich JD, Godfrey TE. Optimal markers for real-time quantitative reverse transcription PCR detection of circulating tumor cells from melanoma, breast, colon, esophageal, head and neck, and lung can- cers. Clin Chem 2007;53:1206-15.
    • (2007) Clin Chem , vol.53 , pp. 1206-1215
    • Xi, L.1    Nicastri, D.G.2    El-Hefnawy, T.3    Hughes, S.J.4    Luke- tich, J.D.5    Godfrey, T.E.6
  • 29
    • 44949231424 scopus 로고    scopus 로고
    • Analyzing real-time PCR data by the comparative C-T method
    • Schmittgen TD, Livak KJ. Analyzing real-time PCR data by the comparative C-T method. Nat Protoc 2008;3:1101-8.
    • (2008) Nat Protoc , vol.3 , pp. 1101-1108
    • Schmittgen, T.D.1    Livak, K.J.2
  • 30
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalisation; strategies and consider- ations
    • Huggett J, Dheda K, Bustin S, Zumla A. Real-time RT-PCR normalisation; strategies and consider- ations. Genes Immun 2005;6:279-84.
    • (2005) Genes Immun , vol.6 , pp. 279-284
    • Huggett, J.1    Dheda, K.2    Bustin, S.3    Zumla, A.4
  • 31
    • 29244459423 scopus 로고    scopus 로고
    • Choice of endogenous control for gene expression in nonsmall cell lung cancer
    • Liu DW, Chen ST, Liu HP. Choice of endogenous control for gene expression in nonsmall cell lung cancer. Eur Respir J 2005;26:1002-8.
    • (2005) Eur Respir J , vol.26 , pp. 1002-1008
    • Liu, D.W.1    Chen, S.T.2    Liu, H.P.3
  • 32
    • 0038692119 scopus 로고    scopus 로고
    • Human housekeeping genes are compact
    • Eisenberg E, Levanon EY. Human housekeeping genes are compact. Trends Genet 2003;19: 362-5.
    • (2003) Trends Genet , vol.19 , pp. 362-365
    • Eisenberg, E.1    Levanon, E.Y.2
  • 33
    • 12344270322 scopus 로고    scopus 로고
    • Normalization of gene expression measurements in tumor tissues: Com- parison of 13 endogenous control genes
    • de Kok JB, Roelofs RW, Giesendorf BA, Pennings JL, Waas ET, Feuth T, et al. Normalization of gene expression measurements in tumor tissues: com- parison of 13 endogenous control genes. Lab Invest 2005;85:154-9.
    • (2005) Lab Invest , vol.85 , pp. 154-159
    • de Kok, J.B.1    Roelofs, R.W.2    Giesendorf, B.A.3    Pennings, J.L.4    Waas, E.T.5    Feuth, T.6
  • 34
    • 12944307847 scopus 로고    scopus 로고
    • Housekeeping gene variability in normal and cancerous colorectal, pancreatic, esophageal, gastric and hepatic tissues
    • Rubie C, Kempf K, Hans J, Su T, Tilton B, Georg T, et al. Housekeeping gene variability in normal and cancerous colorectal, pancreatic, esophageal, gastric and hepatic tissues. Mol Cell Probes 2005; 19:101-9.
    • (2005) Mol Cell Probes , vol.19 , pp. 101-109
    • Rubie, C.1    Kempf, K.2    Hans, J.3    Su, T.4    Tilton, B.5    Georg, T.6
  • 35
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real- time reverse transcription PCR (RT-PCR): Trends and problems
    • Bustin SA. Quantification of mRNA using real- time reverse transcription PCR (RT-PCR): trends and problems. J Mol Endocrinol 2002;29:23-39.
    • (2002) J Mol Endocrinol , vol.29 , pp. 23-39
    • Bustin, S.A.1
  • 36
    • 0033775615 scopus 로고    scopus 로고
    • Absolute quantification of mRNA using Interindividual Variation in Genomewide Gene Expression real-time reverse transcription polymerase chain re- action assays
    • Bustin S. Absolute quantification of mRNA using Interindividual Variation in Genomewide Gene Expression real-time reverse transcription polymerase chain re- action assays. J Mol Endocrinol 2000;25:169-93.
    • (2000) J Mol Endocrinol , vol.25 , pp. 169-193
    • Bustin, S.1
  • 38
    • 33745201174 scopus 로고    scopus 로고
    • Monocyte HLA-DR and interferon-gamma treat- ment in severely injured patients-a critical re- appraisal more than a decade later
    • Turina M, Dickinson A, Gardner S, Polk HC Jr. Monocyte HLA-DR and interferon-gamma treat- ment in severely injured patients-a critical re- appraisal more than a decade later. J Am Coll Surg 2006;203:73-81.
    • (2006) J Am Coll Surg , vol.203 , pp. 73-81
    • Turina, M.1    Dickinson, A.2    Gardner, S.3    Polk Jr., H.C.4


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