Avoidance of Linkage Drag Between Blast Resistance Gene and the QTL Conditioning Spikelet Fertility Based on Genotype Selection Against Heading Date in Rice

Rice Science

Volumn 16, Issue 1, 2009, Pages 21-26

  LIU, Wen qiang ^a   FAN, Ye yang ^a   CHEN, Jie ^a   SHI, Yong feng ^a   WU, Jian li ^a  

^a CHINA NATIONAL RICE RESEARCH INSTITUTE   (China)

Author keywords

blast resistance; heading date; linkage drag; quantitative trait locus; rice (Oryza sativa); spikelet fertility

Indexed keywords

ORYZA SATIVA;

EID: 64049086473     PISSN: 16726308     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1672-6308(08)60052-9     Document Type: Article

References (24)

1. Chen X.W., Shang J.J., Chen D.X., Lei C.L., Zhou Y., Zhai W.X., Liu G.Z., Xu J.C., Ling Z.Z., Cao G., Ma B.T., Wang Y.P., Zhao X.F., Li S.G., and Zhu L.H. A B-lectin receptor kinase conferring rice blast resistance. Plant J 46 (2006) 794-804
2. Liu X.Q., Lin F., Wang L., and Pan Q.H. The in silico map-based cloning of Pi36, a rice CC-NBS-LRR gene which confers race-specific resistance to the blast fungus. Genetics 176 (2007) 2541-2549
3. Deng Y.W., Zhu X.D., Shen Y., and He Z.H. Genetic characterization and fine mapping of the blast resistance locus Pigm(t) tightly linked to Pi2 and Pi9 in a broad-spectrum resistant Chinese variety. Theor Appl Genet 113 (2006) 705-713
4. Song X.J., Huang W., Shi M., Zhu M.Z., and Lin H.X. A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nat Genet 39 (2007) 623-630
5. Fan C.C., Zhong Y., Mao H.L., Lu T.T., Han B., Xu C.G., Li X.H., and Zhang Q.F. GS3, a major QTL for grain length and weight and minor QTL, for grain width and thickness in rice, encodes a putative transmembrane protein. Theor Appl Genet 112 (2006) 1164-1171
6. 3 data. Genetics 15 (1930) 81-98
7. Immer F.R., and Henderson M.T. Linkage studies in barley. Genetics 28 (1943) 419-440
8. Masao Y., and Hiroshi F. Tight linkage of blast-resistance with late maturity observed in different indica varieties of rice. Jpn J Breeding 21 (1971) 35-39
9. Zhuang J.Y., Wu J.L., Fan Y.Y., Rao Z.M., and Zheng K.L. Genetic drag between a blast resistance gene and QTL conditioning yield trait detected in a recombinant inbred line population in rice. RGN 18 (2001) 67-69
10. Remington D.L., Thornsberry J.M., Matsuoka Y., Wilson L.M., Whitt S.R., Doebley J., Kresovich S., Goodman M.M., and Buckler E.S. Structure of linkage disequilibrium and phenotypic associations in the maize genome. Proc Natl Acad Sci USA 98 (2001) 11479-11484
11. Tenaillon M.I., Sawkins M.C., Long A.D., Gaut R.L., Doebley J.F., and Gaut B.S. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc Natl Acad Sci USA 98 (2001) 9161-9166
12. Hagenblad J., and Nordborg M. Sequence variation and haplotype structure surrounding the flowering time locus FR1 in Arabidopsis thaliana. Genetics 161 (2002) 289-298
13. Garris A.J., McCouch S.R., and Kresovich S. Population structure and its effect on haplotype diversity and linkage disequilibrium surrounding the xa5 locus of rice (Oryza sativa L.). Genetics 165 (2003) 759-769
14. Wu J.L., Chai R.Y., Fan Y.Y., Li D.B., Zheng K.L., Leung H., and Zhuang J.Y. Clustering of major genes conferring blast resistance in a durable resistance rice cultivar Gumei 2. Rice Sci 11 (2004) 161-164
15. Lu Y.J., and Zheng K.L. A simple method for isolation of rice DNA. Chinese J Rice Sci 6 (1992) 47-48 (in Chinese).
16. Wu J.L., Fan Y.Y., Li D.B., Zheng K.L., and Zhuang J.Y. Genetic control of rice blast resistance in the durably resistant cultivar Gumei 2 against multiple isolates. Theor Appl Genet 111 (2005) 50-56
17. Lincoln S., Daley M., and Lander E. Constructing genes maps with MAPMAKER/EXP 3.0. Whitehead Institute Technical Report. 3rd edn. (1992), Whitehead Institute, Cambridge, MA
18. Wang S., Basten C.J., and Zeng Z.B. Windows QTL CARTO-GRAPHER 2.5 (2004), Department of Statistics, North Carolina State University, USA, Raleigh, NC
19. t resistance protein determine the resistance specificity to Magnoporthe grisea. MPMI 19 (2006) 1216-1228
20. Qu S.H., Liu G.F., Zhou B., Bellizzie M., Zeng L.R., Dai L.Y., Han B., and Wang G.L. The broad-spectrum blast resistance gene Pi9 encodes an NBS-LRR protein and is a member of the multiple family in rice. Genetics 172 (2006) 1901-1914
21. Yano M., Katayose Y., Ashikari M., Yamanouchi U., Monna L., Fuse T., Baba T., Yamamoto K., Umehara Y., Nagamura Y., and Sasaki T. Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12 (2000) 2473-2483
22. Yamamoto T., Kuboki Y., Lin S.Y., Sasaki T., and Yano M. Fine mapping of quantitative loci Hd-1, Hd-2 and Hd-3, controlling heading date of rice, as single Mendelian factors. Theor Appl Genet 97 (1998) 37-44
23. Kojima S., Takahashi Y., Kobayashi Y., Monna L., Sasaki T., Araki T., and Yano M. Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiol 43 (2002) 1096-1105
24. Takahashi Y., Shomura A., Sasaki T., and Yano M. Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes the alpha subunit of protein kinase CK2. Proc Natl Acad Sci USA 98 (2001) 7922-7927