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Volumn 75, Issue 7, 2009, Pages 2079-2090

Oenococcus oeni genome plasticity is associated with fitness

Author keywords

[No Author keywords available]

Indexed keywords

BACILLI; ELASTICITY; WINE;

EID: 63849335934     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02194-08     Document Type: Article
Times cited : (57)

References (50)
  • 2
    • 56649119062 scopus 로고    scopus 로고
    • Characterization of an acquired dps- containing gene island in the lactic acid bacterium Oenococcus oeni
    • Athané, A., E. Bilhère, E. Bon, P. Lucas, A. Lonvaud, and C. Le Marrec. 2008. Characterization of an acquired dps- containing gene island in the lactic acid bacterium Oenococcus oeni. J. Appl. Microbiol. 105:1866-1875.
    • (2008) J. Appl. Microbiol , vol.105 , pp. 1866-1875
    • Athané, A.1    Bilhère, E.2    Bon, E.3    Lucas, P.4    Lonvaud, A.5    Le Marrec, C.6
  • 3
    • 1642410137 scopus 로고    scopus 로고
    • A bacterial gene homologous to ABC transporters protects Oenococcus oeni from ethanol and other stress factors in wine
    • Bourdineaud, J. P., B. Nehme, S. Tesse, and A. Lonvaud-Funel. 2004. A bacterial gene homologous to ABC transporters protects Oenococcus oeni from ethanol and other stress factors in wine. Int. J. Food Microbiol. 92: 1-14.
    • (2004) Int. J. Food Microbiol , vol.92 , pp. 1-14
    • Bourdineaud, J.P.1    Nehme, B.2    Tesse, S.3    Lonvaud-Funel, A.4
  • 4
    • 33644889057 scopus 로고    scopus 로고
    • Both arginine and fructose stimulate pH-indepen-dent resistance in the wine bacteria Oenococcus oeni
    • Bourdineaud, J. P. 2006. Both arginine and fructose stimulate pH-indepen-dent resistance in the wine bacteria Oenococcus oeni. Int. J. Food Microbiol. 107:274-280.
    • (2006) Int. J. Food Microbiol , vol.107 , pp. 274-280
    • Bourdineaud, J.P.1
  • 5
    • 4544321685 scopus 로고    scopus 로고
    • Phages and the evolution of bacterial pathogens: From genomic rearrangements to lysogenic conversions
    • Brüssow, H., C. Canchaya, and W. D. Hardt. 2004. Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversions. Microbiol. Mol. Biol. Rev. 68:560-602.
    • (2004) Microbiol. Mol. Biol. Rev , vol.68 , pp. 560-602
    • Brüssow, H.1    Canchaya, C.2    Hardt, W.D.3
  • 8
    • 10444271036 scopus 로고    scopus 로고
    • Allelic diversity and population structure in Oenococcus oeni as determined from sequence analysis of housekeeping genes
    • de Las Rivas, B., A. Marcobal, and R. Munoz. 2004. Allelic diversity and population structure in Oenococcus oeni as determined from sequence analysis of housekeeping genes. Appl. Environ. Microbiol. 70:7210-7219.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 7210-7219
    • de Las Rivas, B.1    Marcobal, A.2    Munoz, R.3
  • 9
    • 23944526394 scopus 로고    scopus 로고
    • Sequence analysis of the plasmid genome of the probiotic strain Lactobacillus paracasei NFBC338 which includes the plasmids pCDOl and pCD02
    • s
    • Desmond, C, R. P. Ross, G. Fitzgerald, and C. Stanton. 2005. Sequence analysis of the plasmid genome of the probiotic strain Lactobacillus paracasei NFBC338 which includes the plasmids pCDOl and pCD02. Plasmid 54s:160-175.
    • (2005) Plasmid , vol.54 , pp. 160-175
    • Desmond, C.1    Ross, R.P.2    Fitzgerald, G.3    Stanton, C.4
  • 10
    • 11844274688 scopus 로고    scopus 로고
    • Determination of an internal control to apply reverse transcription quantitative PCR to study stress response in the lactic acid bacterium Oenococcus oeni
    • Desroche, N., C. Beltramo, and J. Guzzo. 2005. Determination of an internal control to apply reverse transcription quantitative PCR to study stress response in the lactic acid bacterium Oenococcus oeni. J. Microbiol. Methods 60:325-333.
    • (2005) J. Microbiol. Methods , vol.60 , pp. 325-333
    • Desroche, N.1    Beltramo, C.2    Guzzo, J.3
  • 11
    • 0025176875 scopus 로고
    • Taxonomy of Leuconostoc species, particularly Leuconostoc oenos, as revealed by numerical analysis of total soluble cell protein patterns, DNA base composition and DNA-DNA hybridizations
    • Dicks, L. M. T., H. J. J. Van Vuuren, and F. Dellaglio. 1990. Taxonomy of Leuconostoc species, particularly Leuconostoc oenos, as revealed by numerical analysis of total soluble cell protein patterns, DNA base composition and DNA-DNA hybridizations. Int. J. Syst. Bacteriol. 40:83-91.
    • (1990) Int. J. Syst. Bacteriol , vol.40 , pp. 83-91
    • Dicks, L.M.T.1    Van Vuuren, H.J.J.2    Dellaglio, F.3
  • 12
    • 0242584380 scopus 로고    scopus 로고
    • Molecular characterization of Oenococcus oeni genes encoding proteins involved in arginine transport
    • Divol, B., T, Tonon, S. Morichon, E. Gindreau, and A. Lonvaud-Funel, 2003. Molecular characterization of Oenococcus oeni genes encoding proteins involved in arginine transport. J. Appl. Microbiol.94:738-746.
    • (2003) J. Appl. Microbiol , vol.94 , pp. 738-746
    • Divol, B.T.1    Tonon2    Morichon, S.3    Gindreau, E.4    Lonvaud-Funel, A.5
  • 13
    • 46949089096 scopus 로고    scopus 로고
    • Studies on gtf, a glucosyltransferase gene in the genome of Pediococcus parvulus and Oenococcus oeni, two bacterial species commonly found in wine
    • Dols-Lafargue, M., H. Y. Lee, C. Le Marrec, A, Heyraud, G. Chambat, and A. Lonvaud-Funel. 2008. Studies on gtf, a glucosyltransferase gene in the genome of Pediococcus parvulus and Oenococcus oeni, two bacterial species commonly found in wine. Appl. Environ. Microbiol. 74:4079-4090.
    • (2008) Appl. Environ. Microbiol , vol.74 , pp. 4079-4090
    • Dols-Lafargue, M.1    Lee, H.Y.2    Le Marrec, C.3    Heyraud, A.4    Chambat, G.5    Lonvaud-Funel, A.6
  • 14
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing, B., L. Hillier, M. C. Wendl, and P. Green. 1998. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8:175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 15
    • 0038121597 scopus 로고    scopus 로고
    • Sequence analysis and characterization of plasmids from Streptococcus thermophilus
    • Geis, A., H. A. El Demerdash, and K. J. Heller. 2003. Sequence analysis and characterization of plasmids from Streptococcus thermophilus. Plasmid 50: 53-69.
    • (2003) Plasmid , vol.50 , pp. 53-69
    • Geis, A.1    El Demerdash, H.A.2    Heller, K.J.3
  • 16
    • 0031043630 scopus 로고    scopus 로고
    • Identification and sequence analysis of the region encoding the site-specific integration system from Leuconostoc oenos (Oenococcus oeni) temperate bacteriophage phl 10MC
    • Gindreau, E., S. Torlois, and A. Lonvaud-Funel. 1997. Identification and sequence analysis of the region encoding the site-specific integration system from Leuconostoc oenos (Oenococcus oeni) temperate bacteriophage phl 10MC. FEMS Microbiol. Lett. 147:279-285.
    • (1997) FEMS Microbiol. Lett , vol.147 , pp. 279-285
    • Gindreau, E.1    Torlois, S.2    Lonvaud-Funel, A.3
  • 17
    • 0033020341 scopus 로고    scopus 로고
    • Molecular analysis of the region encoding the lytic system from Oenococcus oeni temperate phl 10MC
    • Gindreau, E., and A. Lonvaud-Funel. 1999. Molecular analysis of the region encoding the lytic system from Oenococcus oeni temperate phl 10MC. FEMS Microbiol. Lett. 171:231-238.
    • (1999) FEMS Microbiol. Lett , vol.171 , pp. 231-238
    • Gindreau, E.1    Lonvaud-Funel, A.2
  • 19
    • 0029933276 scopus 로고    scopus 로고
    • An improved sequence assembly program
    • Huang, X. 1996. An improved sequence assembly program. Genomics 133: 21-31.
    • (1996) Genomics , vol.133 , pp. 21-31
    • Huang, X.1
  • 20
    • 0032898423 scopus 로고    scopus 로고
    • Expression of the Oenococcus oeni trxA gene is induced by hydrogen peroxide and heat shock
    • Jobin, M. P., D. Garmyn, C. Diviès, and J. Guzzo. 1999. Expression of the Oenococcus oeni trxA gene is induced by hydrogen peroxide and heat shock. Microbiology 145:1245-1251.
    • (1999) Microbiology , vol.145 , pp. 1245-1251
    • Jobin, M.P.1    Garmyn, D.2    Diviès, C.3    Guzzo, J.4
  • 21
    • 0344153756 scopus 로고    scopus 로고
    • Phytogeny of the bacterial superfamily of Crp-Fnr transcription regulators: Exploiting the metabolic spectrum by controlling alternative gene programs
    • Körner, H., H. J. Sofia, and W. G. Zumft. 2003. Phytogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs. FEMS Microbiol. Rev. 27:589-592.
    • (2003) FEMS Microbiol. Rev , vol.27 , pp. 589-592
    • Körner, H.1    Sofia, H.J.2    Zumft, W.G.3
  • 22
    • 33745647288 scopus 로고    scopus 로고
    • Evaluation of intra-specific diversities in Oenococcus oeni through analysis of genomic and expressed DNA
    • Lechiancole, T., G. Blaiotta, D. Messina, V. Fusco, F. Vilani, and G. Salzano. 2006. Evaluation of intra-specific diversities in Oenococcus oeni through analysis of genomic and expressed DNA. Syst. Appl. Microbiol. 29:375-381.
    • (2006) Syst. Appl. Microbiol , vol.29 , pp. 375-381
    • Lechiancole, T.1    Blaiotta, G.2    Messina, D.3    Fusco, V.4    Vilani, F.5    Salzano, G.6
  • 23
    • 0031039767 scopus 로고    scopus 로고
    • Sequence of DNA 16S/23S spacer region of Leuconostoc oenos (Oenococcus oeni): Application to strain differentiation
    • Le Jeune, C, and A. Lonvaud-Funel. 1997. Sequence of DNA 16S/23S spacer region of Leuconostoc oenos (Oenococcus oeni): application to strain differentiation. Res. Microbiol. 148:79-86.
    • (1997) Res. Microbiol , vol.148 , pp. 79-86
    • Le Jeune, C.1    Lonvaud-Funel, A.2
  • 25
    • 33845539696 scopus 로고    scopus 로고
    • Evidence for horizontal gene transfer as origin of putrescine production in Oenococcus oeni RM83
    • Marcobal, A., B. de Las Rivas, M. W. Moreno-Arribas, and R. Munoz. 2006. Evidence for horizontal gene transfer as origin of putrescine production in Oenococcus oeni RM83. Appl. Environ. Microbiol. 72:7954-7958.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 7954-7958
    • Marcobal, A.1    de Las Rivas, B.2    Moreno-Arribas, M.W.3    Munoz, R.4
  • 26
    • 38749153289 scopus 로고    scopus 로고
    • Role of hypermutability in the evolution of the genus Oenococcus
    • Marcobal, A. M., D. A. Sela, Y. I. Wolf, K. S. Makarova, and D. A. Mills. 2008. Role of hypermutability in the evolution of the genus Oenococcus. J. Bacteriol. 190:564-570.
    • (2008) J. Bacteriol , vol.190 , pp. 564-570
    • Marcobal, A.M.1    Sela, D.A.2    Wolf, Y.I.3    Makarova, K.S.4    Mills, D.A.5
  • 27
    • 23944514505 scopus 로고    scopus 로고
    • Genomic analysis of Oenococcus oeni PSU-1 and its relevance to winemak-ing
    • Mills, D. A., H. Rawsthorne, C. Parker, D. Tamir, and K. Makarova. 2005. Genomic analysis of Oenococcus oeni PSU-1 and its relevance to winemak-ing. FEMS Microbiol. Rev. 29:465-475.
    • (2005) FEMS Microbiol. Rev , vol.29 , pp. 465-475
    • Mills, D.A.1    Rawsthorne, H.2    Parker, C.3    Tamir, D.4    Makarova, K.5
  • 29
    • 33645704918 scopus 로고    scopus 로고
    • The arginine deimi-nase locus of Oenococcus oeni includes a putative arginyl-tRNA synthetase AxgS2 at its 3'-end
    • Nehmé, B., M. A. Ganga, and A. Lonvaud-Funel. 2006. The arginine deimi-nase locus of Oenococcus oeni includes a putative arginyl-tRNA synthetase AxgS2 at its 3'-end. Appl. Microbiol. Biotechnol. 70:590-597.
    • (2006) Appl. Microbiol. Biotechnol , vol.70 , pp. 590-597
    • Nehmé, B.1    Ganga, M.A.2    Lonvaud-Funel, A.3
  • 30
    • 0142040874 scopus 로고    scopus 로고
    • ISLpll is a functional IS30-related insertion element in Lactobacillus plantarum that is also found in other lactic acid bacteria
    • Nicoloff, H., and F. Bringel. 2003. ISLpll is a functional IS30-related insertion element in Lactobacillus plantarum that is also found in other lactic acid bacteria. Appl. Environ. Microbiol. 69:6032-6040.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 6032-6040
    • Nicoloff, H.1    Bringel, F.2
  • 31
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • Notredame, C, D. G. Higgins, and J. Heringa. 2000. T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302:205-217.
    • (2000) J. Mol. Biol , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 34
    • 0031955536 scopus 로고    scopus 로고
    • Lysogeny of Oenococcus oeni and study of their induced bacteriophages
    • Poblet-Icart, M., A. Bordons, and A. Lonvaud-Funel. 1998. Lysogeny of Oenococcus oeni and study of their induced bacteriophages. Curr. Microbiol. 36:365-369.
    • (1998) Curr. Microbiol , vol.36 , pp. 365-369
    • Poblet-Icart, M.1    Bordons, A.2    Lonvaud-Funel, A.3
  • 35
    • 18244394012 scopus 로고    scopus 로고
    • Role of mutS and mutL genes in hypermutability and recombination in Staphylococcus aureus
    • Prunier, A. L., and R. Leclercq. 2005. Role of mutS and mutL genes in hypermutability and recombination in Staphylococcus aureus. J. Bacteriol. 187:3455-3464.
    • (2005) J. Bacteriol , vol.187 , pp. 3455-3464
    • Prunier, A.L.1    Leclercq, R.2
  • 36
    • 1942520292 scopus 로고    scopus 로고
    • Escherichia coli thioredoxin inhibition by cadmium: Two mutually exclusive binding sites involving Cys32 and Asp26
    • Rollin-Genetet, F., C. Berthomieu, A. H. Davin, and E. Quéméneur. 2004. Escherichia coli thioredoxin inhibition by cadmium: two mutually exclusive binding sites involving Cys32 and Asp26. Eur. J. Biochem. 271:1299-1309.
    • (2004) Eur. J. Biochem , vol.271 , pp. 1299-1309
    • Rollin-Genetet, F.1    Berthomieu, C.2    Davin, A.H.3    Quéméneur, E.4
  • 37
    • 0031918310 scopus 로고    scopus 로고
    • Genome diversity in temperate bacteriophages of Oenococcus oeni
    • Santos, R., C. Sao-José G. Vieira, H. Paveia, and M. A. Santos. 1998. Genome diversity in temperate bacteriophages of Oenococcus oeni. Arch. Virol. 143:523-536.
    • (1998) Arch. Virol , vol.143 , pp. 523-536
    • Santos, R.1    Sao-José, C.2    Vieira, G.3    Paveia, H.4    Santos, M.A.5
  • 38
    • 3042658408 scopus 로고    scopus 로고
    • Diversity in the lysis-integration region of oenophage genomes and evidence for multiple tRNA loci, as targets for prophage integration in Oenococcus oeni
    • Sao-José, C, S. Santos, J. Nascimento, A. G. Brito-Madurro, and M. A. Santos. 2004. Diversity in the lysis-integration region of oenophage genomes and evidence for multiple tRNA loci, as targets for prophage integration in Oenococcus oeni. Virology 32582-95.
    • (2004) Virology , vol.325 , pp. 82-95
    • Sao-José, C.1    Santos, S.2    Nascimento, J.3    Brito-Madurro, A.G.4    Santos, M.A.5
  • 42
    • 33646777080 scopus 로고    scopus 로고
    • Environmental stress response in wine lactic acid bacteria: Beyond Bacillus subtilis
    • Spano, G., and S. Massa. 2006. Environmental stress response in wine lactic acid bacteria: beyond Bacillus subtilis. Crit. Rev. Microbiol. 32:77-86.
    • (2006) Crit. Rev. Microbiol , vol.32 , pp. 77-86
    • Spano, G.1    Massa, S.2
  • 43
    • 0025236912 scopus 로고
    • Genomic subtraction for cloning DNA corresponding to deletion mutations
    • Straus, D. F, and M. Ausubel. 1990. Genomic subtraction for cloning DNA corresponding to deletion mutations. Proc. Natl. Acad. Sci. USA 87:1889-1893.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 1889-1893
    • Straus, D.F.1    Ausubel, M.2
  • 44
    • 0028143188 scopus 로고
    • Cloning, sequence and in vitro transcription/translation analysis of a 3.2-kb EcoRI-HindIII fragment of Leuconostoc oenos bacteriophage L10
    • Sutherland, M., H. J. van Vuuren, and M. M. Howe. 1994. Cloning, sequence and in vitro transcription/translation analysis of a 3.2-kb EcoRI-HindIII fragment of Leuconostoc oenos bacteriophage L10. Gene 148:125-129.
    • (1994) Gene , vol.148 , pp. 125-129
    • Sutherland, M.1    van Vuuren, H.J.2    Howe, M.M.3
  • 45
    • 0028103862 scopus 로고
    • Inter-strain relationships among wine leuconostocs and their divergence from other Leuconostoc species, as revealed by low frequency restriction fragment analysis of genomic DNA
    • Tenreiro, R., M. A. Santos, H. Paveia, and G. Vieira. 1994. Inter-strain relationships among wine leuconostocs and their divergence from other Leuconostoc species, as revealed by low frequency restriction fragment analysis of genomic DNA. J. Appl. Bacteriol. 77:271-280.
    • (1994) J. Appl. Bacteriol , vol.77 , pp. 271-280
    • Tenreiro, R.1    Santos, M.A.2    Paveia, H.3    Vieira, G.4
  • 46
    • 34248648767 scopus 로고    scopus 로고
    • Coordinating responses to iron and oxygen stress with DNA and mRNA promoters: The ferritin story
    • Theil, E. C. 2007. Coordinating responses to iron and oxygen stress with DNA and mRNA promoters: the ferritin story. Biometals 20:513-521.
    • (2007) Biometals , vol.20 , pp. 513-521
    • Theil, E.C.1
  • 47
    • 0034862014 scopus 로고    scopus 로고
    • The arcABC gene cluster encoding the arginine deiminase pathway of Oenococcus oeni, and arginine induction of a CRP-like gene
    • Tonon, T., J. P. Bourdineaud, and A. Lonvaud-Funel. 2001. The arcABC gene cluster encoding the arginine deiminase pathway of Oenococcus oeni, and arginine induction of a CRP-like gene. Res. Microbiol. 152:653-661.
    • (2001) Res. Microbiol , vol.152 , pp. 653-661
    • Tonon, T.1    Bourdineaud, J.P.2    Lonvaud-Funel, A.3
  • 48
    • 33645009654 scopus 로고    scopus 로고
    • Conservation of key elements of natural competence in Lactococcus lactis ssp
    • Wydau, S., R. Dervyn, J. Anba, S. Dusko Ehrlich, and E. Maguin. 2006. Conservation of key elements of natural competence in Lactococcus lactis ssp. FEMS Microbiol. Lett. 257:32-42.
    • (2006) FEMS Microbiol. Lett , vol.257 , pp. 32-42
    • Wydau, S.1    Dervyn, R.2    Anba, J.3    Dusko Ehrlich, S.4    Maguin, E.5
  • 49
    • 0034116547 scopus 로고    scopus 로고
    • Genomic DNA fingerprinting of Oenococcus oeni strains by pulsed-field gel electrophoresis and randomly amplified polymorphic DNA-PCR
    • Zapparoli, G., C. Reguant, A. Bordons, S. Torriani, and F. Dellaglio. 2000. Genomic DNA fingerprinting of Oenococcus oeni strains by pulsed-field gel electrophoresis and randomly amplified polymorphic DNA-PCR. Curr. Microbiol. 40:351-355.
    • (2000) Curr. Microbiol , vol.40 , pp. 351-355
    • Zapparoli, G.1    Reguant, C.2    Bordons, A.3    Torriani, S.4    Dellaglio, F.5
  • 50
    • 0034518221 scopus 로고    scopus 로고
    • The Oenococcus oeni genome: Physical and genetic mapping of strain GM and comparison with the genome of a "divergent" strain, PSU-1
    • Ze-Ze, L., R. Tenreiro, and H. Paveia. 2000. The Oenococcus oeni genome: physical and genetic mapping of strain GM and comparison with the genome of a "divergent" strain, PSU-1. Microbiology 146:3195-3204.
    • (2000) Microbiology , vol.146 , pp. 3195-3204
    • Ze-Ze, L.1    Tenreiro, R.2    Paveia, H.3


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