Identification and testing of control peptides for antigen microarrays

Journal of Immunological Methods

Volumn 343, Issue 2, 2009, Pages 68-78

  Ngo, Yen ^a   Advani, Reza ^b   Valentini, Davide ^a   Gaseitsiwe, Simani ^b   Mahdavifar, Shahnaz ^b   Maeurer, Markus ^b,c   Reilly, Marie ^a  

^a KAROLINSKA INSTITUTE   (Sweden)

^b Tumor   (Sweden)

^c SWEDISH INSTITUTE FOR INFECTIOUS DISEASE CONTROL   (Sweden)

Author keywords

Bordatella pertussis; False positives; High density printing; M.tuberculosis; Peptide microarrays; Positive controls; Reproducibility

Indexed keywords

ANTIGEN; BUFFER; PROTEIN;

ARTICLE; BLOOD ANALYSIS; BORDETELLA PERTUSSIS; DILUTION; HUMAN; INCUBATION TIME; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN MICROARRAY; PROTEIN SYNTHESIS; TUBERCULOSIS;

AMINO ACID SEQUENCE; ANTIBODIES; ANTIGENS, BACTERIAL; BORDETELLA PERTUSSIS; HUMANS; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM TUBERCULOSIS; PEPTIDES; PROTEIN ARRAY ANALYSIS; REPRODUCIBILITY OF RESULTS; SOFTWARE;

BORDETELLA PERTUSSIS; MYCOBACTERIUM TUBERCULOSIS;

EID: 63749099541     PISSN: 00221759     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jim.2008.12.004     Document Type: Article

References (10)

1. GenePix Pro 6.0. Microarray acquisition and analysis software for GenePix microarray scanners: user's guide and tutorial. Copyright 2005 Molecular Devices, Corp.
2. Gustafsson L., Hallander H.O., Olin P., Reizenstein E., and Storsaeter J. A controlled trial of a two-component acellular, a five-component acellular, and a whole-cell pertussis vaccine. N. Engl. J. Med. 334 6 (1996) 349 Feb 8
3. Hueber W., Tomooka B.H., Zhao X., Kidd B.A., Drijfhout J.W., Fries J.F., van Venrooij W.J., Metzger A.L., Genovese M.C., and Robinson W.H. Proteomic analysis of secreted proteins in early rheumatoid arthritis: anti-citrulline autoreactivity is associated with up regulation of proinflammatory cytokines. Ann. Rheum. Dis. 66 6 (2007) 712 Jun
4. Kozarova A., Petrinac S., Ali A., and Hudson J.W. Array of informatics: applications in modern research. J. Proteome Res. 5 5 (2006) 1051 May
5. MacBeath G., and Schreiber S.L. Printing proteins as microarrays for high-throughput function determination. Science 289 5485 (2000) 1760
6. Nahtman T., Jernberg A., Mahdavifar S., Zerweck J., Schutkowski M., Maeurer M., and Reilly M. Validation of peptide epitope microarray experiments and extraction of quality data. J. Immunol. Methods 328 1-2 (2007) 1 Dec 1
7. Neuman de Vegvar H.E., Amara R.R., Steinman L., Utz P.J., Robinson H.L., and Robinson W.H. Microarray profiling of antibody responses against simian-human immunodeficiency virus: postchallenge convergence of reactivities independent of host histocompatibility type and vaccine regimen. J. Virol. 77 (2003) 11125
8. Quintana F.J., Hagedorn P.H., Elizur G., Merbl Y., Domany E., and Cohen I. Functional immunomics: microarray analysis of IgG autoantibody repertoires predicts the future response of mice to induced diabetes. PNAS 101 (2004) 14615
9. R Development Core Team. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria (2007). http://www.R-project.org ISBN 3-900051-07-0, URL http://www.R-project.org
10. Robinson W.H., DiGennaro C., Hueber W., Haab B.B., Kamachi M., Dean E.J., Fournel S., Fong D., Genovese M.C., de Vegvar H.E., Skriner K., Hirschberg D.L., Morris R.I., Muller S., Pruijn G.J., van Venrooij W.J., Smolen J.S., Brown P.O., Steinman L., and Utz P.J. Autoantigen microarrays for multiplex characterization of autoantibody responses. Nat. Med. 8 3 (2002) 295 Mar