메뉴 건너뛰기




Volumn 20, Issue 3, 2009, Pages 603-607

Osmium complexation of mismatched DNA: Effect of the bases adjacent to mismatched 5-methylcytosine

Author keywords

[No Author keywords available]

Indexed keywords

5 METHYLCYTOSINE; DNA; DNA BASE; OSMIUM; THYMINE;

EID: 63749099318     PISSN: 10431802     EISSN: None     Source Type: Journal    
DOI: 10.1021/bc800531z     Document Type: Article
Times cited : (14)

References (25)
  • 2
    • 0014023956 scopus 로고
    • Isolation and properties of isomeric thymine dimers
    • Weinblum, D., and Johns, H. (1966) Isolation and properties of isomeric thymine dimers. Biochim. Biophys. Acta 114, 450-459.
    • (1966) Biochim. Biophys. Acta , vol.114 , pp. 450-459
    • Weinblum, D.1    Johns, H.2
  • 3
    • 0016898893 scopus 로고
    • Bisulfite modification of nucleic acids and their constituents
    • Hayatsu, H. (1976) Bisulfite modification of nucleic acids and their constituents. Prog. Nucleic Acids Res. Mol. Biol. 16, 75-124.
    • (1976) Prog. Nucleic Acids Res. Mol. Biol , vol.16 , pp. 75-124
    • Hayatsu, H.1
  • 4
    • 0001773702 scopus 로고
    • Damage to DNA caused by hydrolysis
    • Seeberg, E, and Kleppe, K, Eds, pp, Plenum Publishing Corp, New York
    • Shapiro, R. (1981) Damage to DNA caused by hydrolysis. Chromosome Damage and Repair (Seeberg, E., and Kleppe, K., Eds.) pp 3-12, Plenum Publishing Corp., New York.
    • (1981) Chromosome Damage and Repair , pp. 3-12
    • Shapiro, R.1
  • 5
    • 0027212216 scopus 로고
    • Kinetics of bisulfate-induced cytosine deamination in single-stranded DNA
    • Chen, H., and Shaw, B. R. (1993) Kinetics of bisulfate-induced cytosine deamination in single-stranded DNA. Biochemistry 32, 3535-3539.
    • (1993) Biochemistry , vol.32 , pp. 3535-3539
    • Chen, H.1    Shaw, B.R.2
  • 6
    • 0013927583 scopus 로고
    • Determination of base sequence in nucleic acids with the electron microscope. V. The thymine-specific reactions of osmium tetroxide with deoxyribonucleic acid and its components
    • Beer, M., Stern, S., Carmalt, D., and Mohlhenrich, K. H. (1966) Determination of base sequence in nucleic acids with the electron microscope. V. The thymine-specific reactions of osmium tetroxide with deoxyribonucleic acid and its components. Biochemistry 5, 2283-2288.
    • (1966) Biochemistry , vol.5 , pp. 2283-2288
    • Beer, M.1    Stern, S.2    Carmalt, D.3    Mohlhenrich, K.H.4
  • 7
    • 0019883163 scopus 로고
    • Identification of the cis-thymine glycol moiety in oxidized deoxyribonucleic acid
    • Frenkel, K., Goldstein, M. S., Duker, N. J., and Teebor, G. W. (1981) Identification of the cis-thymine glycol moiety in oxidized deoxyribonucleic acid. Biochemistry 20, 750-754.
    • (1981) Biochemistry , vol.20 , pp. 750-754
    • Frenkel, K.1    Goldstein, M.S.2    Duker, N.J.3    Teebor, G.W.4
  • 8
    • 0020490761 scopus 로고
    • 5,6-Saturated thymine lesions in DNA-Production by ultraviolet light or hydrogen peroxide
    • Demple, B., and Linn, S. (1982) 5,6-Saturated thymine lesions in DNA-Production by ultraviolet light or hydrogen peroxide. Nucleic Acids Res. 10, 3781-3789.
    • (1982) Nucleic Acids Res , vol.10 , pp. 3781-3789
    • Demple, B.1    Linn, S.2
  • 9
    • 0022472898 scopus 로고
    • Mechanism of OH radical reactions with thymine and uracil derivatives
    • Jovanovic, S. V., and Simic, M. G. (1986) Mechanism of OH radical reactions with thymine and uracil derivatives. J. Am. Chem. Soc. 108, 5968-5972.
    • (1986) J. Am. Chem. Soc , vol.108 , pp. 5968-5972
    • Jovanovic, S.V.1    Simic, M.G.2
  • 10
    • 1842277439 scopus 로고
    • The reaction of osmium tetroxide-pyridine complexes with nucleic acid components
    • Subbaraman, L. R., Subbaraman, J., and Behrman, E. J. (1971) The reaction of osmium tetroxide-pyridine complexes with nucleic acid components. Bioinorg. Chem. 1, 35-55.
    • (1971) Bioinorg. Chem , vol.1 , pp. 35-55
    • Subbaraman, L.R.1    Subbaraman, J.2    Behrman, E.J.3
  • 11
    • 33847782157 scopus 로고
    • Reactions of cytosine and 5-methylcytosine with osmium(VIII) reagents: Synthesis and deamination to uracil and thymine derivatives
    • Chang, C.-H., Ford, H., and Behrman, E. J. (1981) Reactions of cytosine and 5-methylcytosine with osmium(VIII) reagents: Synthesis and deamination to uracil and thymine derivatives. Inorg. Chim. Acta 55, 77-80.
    • (1981) Inorg. Chim. Acta , vol.55 , pp. 77-80
    • Chang, C.-H.1    Ford, H.2    Behrman, E.J.3
  • 12
    • 33744821360 scopus 로고    scopus 로고
    • Sequence- selective osmium oxidation of DNA: Efficient distinction between 5-methylcytosine and cytosine
    • Okamoto, A., Tainaka, K., and Kamei, T. (2006) Sequence- selective osmium oxidation of DNA: Efficient distinction between 5-methylcytosine and cytosine. Org. Biomol. Chem. 4, 1638-1640.
    • (2006) Org. Biomol. Chem , vol.4 , pp. 1638-1640
    • Okamoto, A.1    Tainaka, K.2    Kamei, T.3
  • 13
    • 33847774041 scopus 로고    scopus 로고
    • Methylation- selective fluorescence quenching by osmium complexation
    • Tanaka, K., Tainaka, K., and Okamoto, A. (2007) Methylation- selective fluorescence quenching by osmium complexation. Bioorg. Med. Chem. 15, 1615-1621.
    • (2007) Bioorg. Med. Chem , vol.15 , pp. 1615-1621
    • Tanaka, K.1    Tainaka, K.2    Okamoto, A.3
  • 14
    • 34247855814 scopus 로고    scopus 로고
    • Direct labeling of 5-methylcytosine and its applications
    • Tanaka, K., Tainaka, K., Kamei, T., and Okamoto, A. (2007) Direct labeling of 5-methylcytosine and its applications. J. Am. Chem. Soc. 129, 5612-5620.
    • (2007) J. Am. Chem. Soc , vol.129 , pp. 5612-5620
    • Tanaka, K.1    Tainaka, K.2    Kamei, T.3    Okamoto, A.4
  • 15
    • 57549100476 scopus 로고    scopus 로고
    • Chemical approach toward efficient DNA methylation analysis
    • Okamoto, A. (2009) Chemical approach toward efficient DNA methylation analysis. Org. Biomol. Chem. 7, 21-26.
    • (2009) Org. Biomol. Chem , vol.7 , pp. 21-26
    • Okamoto, A.1
  • 16
    • 0024462602 scopus 로고
    • Genomic sequencing and methylation analysis by ligation mediated PCR
    • Pfeifer, G. P., Steigerwald, S. D., Mueller, P. R., Wold, B., and Riggs, A. D. (1989) Genomic sequencing and methylation analysis by ligation mediated PCR. Science 246, 810-813.
    • (1989) Science , vol.246 , pp. 810-813
    • Pfeifer, G.P.1    Steigerwald, S.D.2    Mueller, P.R.3    Wold, B.4    Riggs, A.D.5
  • 17
    • 0026603943 scopus 로고
    • X-chromosome inactivation and cell memory
    • Riggs, A. D., and Pfeifer, G. P. (1992) X-chromosome inactivation and cell memory. Trends Genet. 8, 169-174.
    • (1992) Trends Genet , vol.8 , pp. 169-174
    • Riggs, A.D.1    Pfeifer, G.P.2
  • 19
    • 0029011539 scopus 로고
    • 5′ CpG island methylation is associated with transcriptional silencing of the tumor suppressor pl6/CDKN2/MTSl in human cancers
    • Merlo, A., Herman, J. G., Mao, L., Lee, D. J., Gabrielson, E., Burger, P. C, Baylin, S. B., and Sidransky, D. (1995) 5′ CpG island methylation is associated with transcriptional silencing of the tumor suppressor pl6/CDKN2/MTSl in human cancers. Nat. Med. 1, 686-692.
    • (1995) Nat. Med , vol.1 , pp. 686-692
    • Merlo, A.1    Herman, J.G.2    Mao, L.3    Lee, D.J.4    Gabrielson, E.5    Burger, P.C.6    Baylin, S.B.7    Sidransky, D.8
  • 20
    • 0030046322 scopus 로고    scopus 로고
    • Hypermethylation-associated inactivation indicates a tumor suppressor role for pl5(INK4Bl)
    • Herman, J. G., Jen, J., Merlo, A., and Baylin, S. B. (1996) Hypermethylation-associated inactivation indicates a tumor suppressor role for pl5(INK4Bl). Cancer Res. 56, 722-727.
    • (1996) Cancer Res , vol.56 , pp. 722-727
    • Herman, J.G.1    Jen, J.2    Merlo, A.3    Baylin, S.B.4
  • 21
    • 36448991947 scopus 로고    scopus 로고
    • An osmium-DNA interstrand complex: Application to facile DNA methylation analysis
    • Tanaka, K., Tainaka, K., Umemoto, T., Nomura, A., and Okamoto, A. (2007) An osmium-DNA interstrand complex: Application to facile DNA methylation analysis. J. Am. Chem. Soc. 129, 14511-14517.
    • (2007) J. Am. Chem. Soc , vol.129 , pp. 14511-14517
    • Tanaka, K.1    Tainaka, K.2    Umemoto, T.3    Nomura, A.4    Okamoto, A.5
  • 22
    • 58149187122 scopus 로고    scopus 로고
    • Heterogeneity of osmium oxidation efficiency at consecutive thymines
    • Nomura, A., and Okamoto, A. (2008) Heterogeneity of osmium oxidation efficiency at consecutive thymines. Org. Biomol. Chem. 6, 3905-3907.
    • (2008) Org. Biomol. Chem , vol.6 , pp. 3905-3907
    • Nomura, A.1    Okamoto, A.2
  • 23
    • 37849030507 scopus 로고    scopus 로고
    • Synthesis and characterization of the 5-methyl-2′-deoxycytidine glycol-dioxoos-mium-bipyridine ternary complex in DNA
    • Umemoto, T., and Okamoto, A. (2008) Synthesis and characterization of the 5-methyl-2′-deoxycytidine glycol-dioxoos-mium-bipyridine ternary complex in DNA. Org. Biomol. Chem. 6, 269-271.
    • (2008) Org. Biomol. Chem , vol.6 , pp. 269-271
    • Umemoto, T.1    Okamoto, A.2
  • 24
    • 0024284752 scopus 로고
    • Base pair mismatches and carcinogen- modified bases in DNA: An NMR study of A-C and A-04meT pairing in dodecanucleotide duplexes
    • Kalnik, M. W., Kouchakdjian, M., Li, B. F. L., Swann, P. F., and Patel, D. J. (1988) Base pair mismatches and carcinogen- modified bases in DNA: an NMR study of A-C and A-04meT pairing in dodecanucleotide duplexes. Biochemistry 27, 100-108.
    • (1988) Biochemistry , vol.27 , pp. 100-108
    • Kalnik, M.W.1    Kouchakdjian, M.2    Li, B.F.L.3    Swann, P.F.4    Patel, D.J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.