Pre-melting dynamics of DNA and its relation to specific functions

Journal of Physics Condensed Matter

Volumn 21, Issue 3, 2009, Pages

  Alexandrov, Boian ^a   Voulgarakis, Nikolaos K ^b   Rasmussen, Kim Ø ^a   Usheva, Anny ^c   Bishop, Alan R ^a  

^a LOS ALAMOS NATIONAL LABORATORY   (United States)

^b University of California   (United States)

^c HARVARD MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DYNAMICS; GENES; NUCLEIC ACIDS;

DNA DOUBLE STRANDS; DNA DYNAMICS; DNA FUNCTIONS; DOUBLE-STRANDED DNAS; DYNAMIC FORCE SPECTROSCOPIES; MELTING DYNAMICS; NON-LINEAR DYNAMICS; REGULATORY EFFECTS; REPAIR PROTEINS; SEQUENCE DEPENDENTS; THERMALLY INDUCED; TRANSCRIPTION INITIATIONS; ULTRA VIOLETS; VIRAL DNAS;

DNA;

EID: 63649104268     PISSN: 09538984     EISSN: 1361648X     Source Type: Journal    
DOI: 10.1088/0953-8984/21/3/034107     Document Type: Article

References (36)

1. Peyrard M and Bishop A R 1989 Phys. Rev. Lett. 62 2755
2. Dauxois T, Peyrard M and Bishop A R 1993 Phys. Rev. E 47 R44
3. Campa A and Giansanti A 1998 Phys. Rev. E 58 3585
4. Montrichok A, Gruner G and Zocchi G 2003 Europhys. Lett. 62 452
5. Zeng Y, Montrichok A and Zocchi G 2003 Phys. Rev. Lett. 91 148101
6. Zeng Y, Montrichok A and Zocchi G 2004 J. Mol. Biol. 339 67
7. Ares S, Voulgarakis N K, Rasmussen K and Bishop AR 2005 Phys. Rev. Lett. 94 035504
8. Danilowicz C, Kafri Y, Conroy R S, Coljee V W, Weeks J and Prentiss M 2004 Phys. Rev. Lett. 93 078101
9. Voulgarakis N K, Redondo A, Bishop A R and Rasmussen K 2006 Phys. Rev. Lett. 96 248101
10. Nelson D R 2006 NATO Science Series II: Mathematics, Physics and Chemistry vol 160 (New York: Springer-Verlag) p65 and references therein
11. Hanne J, Zocchi G, Voulgarakis N K, Bishop A R and Rasmussen K 2007 Phys. Rev. E 76 011909
12. Voulgarakis N K, Kalosakas G, Rasmussen K and Bishop AR 2004 Nano Lett. 4 629
13. Kalosakas G, Rasmussen K and Bishop A R 2004 Synth. Met. 141 93
14. Kalosakas G, Rasmussen K and Bishop A R 2006 Chem. Phys. Lett. 432 291
15. Alexandrov B S, Gelev V, Usheva A, Bishop A R and Rasmussen K 2008 in preperation
16. Allawi H T and SantaLucia J Jr 1997 Biochemistry 36 10581
17. Daphne G, Benjamin D, Vinciane B, Depiereux E, Uversky EV, Gerday C and Feller G 2003 J. Biol. Chem. 278 37015
18. Gueron M, Kochoyan M and Leroy J L 1987 Nature 328 89
19. Choi C H, Kalosakas G, Rasmussen K, Hiromura M, Bishop A R and Usheva A 2004 Nucl. Acids. Res. 32 1584
20. Kalosakas G, Rasmussen K, Bishop A R, Choi C H and Usheva A 2004 Europhys. Lett. 68 127
21. Rapti Z, Smerzi A, Rasmussen K, Bishop A R, Choi C H and Usheva A 2006 Europhys. Lett. 74 540
22. Rapti Z, Smerzi A, Rasmussen K, Bishop A R, Choi C H and Usheva A 2006 Phys. Rev. E 73 51902
23. Alexandrov B S, Wille L T, Rasmussen K, Bishop A R and Blagoev K 2006 Phys. Rev. E 74 50901
24. Montgomery J, Wittwer C T, Palais R and Zhou L 2007 Nat. Protoc. 2 59
25. Kemmink J, Boelens R, Koning T, van der Marel G A, van Boom J H and Kaptein R 1987 Nucl. Acids Res. 15 4645
26. Fixman M 1974 Proc. Natl. Acad. Sci. USA 71 3050
27. Blagoev K B, Alexandrov B S, Goodwin E H and Bishop AR 2006 DNA Repair 7 863
28. Tretiak S, Saxena A, Martin R L and Bishop A R 2003 Proc. Natl. Acad. Sci. USA 100 2185
29. Bishop A R, Lookman T, Saxena A and Shenoy S R 2004 Europhys. Lett. 63 289
30. Ahn K, Lookman T and Bishop A R 2004 Nature 428 401
31. Volkman B F, Lipson D, Wemmer D E and Kern D 2001 Science 291 2429
32. Ming D and Wall M E 2005 Phys. Rev. Lett. 95 198103
33. Juanico B, Sanejouand Y-H, Piazza F and De Los Rios P 2007 Phys. Rev. Lett. 99 238104
34. Thorpe M F, Jacobs D J, Chubynsky M V and Phillips J C 2000 J. Non-Cryst. Solids 266 859
35. Barre J, Bishop A R, Lookman T and Saxena 2005 Phys. Rev. Lett. 94 208701
36. Frauenfelder H, Sligar S G and Wolynes P G 1991 Science 254 1598