Nocardia jinanensis sp. nov., an amicoumacin B-producing actinomycete

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 2, 2009, Pages 417-420

  Sun, Wei ^a   Zhang, Yue Qin ^a   Huang, Ying ^b   Zhang, Yu Qin ^a   Yang, Zhao Yong ^a   Liu, Zhi Heng ^b  

^a INSTITUTE OF MEDICINAL BIOTECHNOLOGY   (China)

^b INSTITUTE OF MICROBIOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMICOUMACIN B; ANTIBIOTIC AGENT; BACTERIAL DNA; BONE MORPHOGENETIC PROTEIN 2; KANAMYCIN; RNA 16S; TOBRAMYCIN; UNCLASSIFIED DRUG; COUMARIN DERIVATIVE;

ACTINOBACTERIA; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; NEW SPECIES; NOCARDIA; NOCARDIA JINANENSIS; NOCARDIA SPELUNCAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SOIL; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; SPECIES DIFFERENCE;

NOCARDIA;

ACTINOBACTERIA; COUMARINS; MOLECULAR SEQUENCE DATA; NOCARDIA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SPECIES SPECIFICITY;

EID: 63449129631     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.002899-0     Document Type: Article

References (39)

1. Collins, M. D. (1985). Isoprenoid quinone analysis in classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
2. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
3. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
4. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
5. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
6. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees. Science 155, 279-284.
7. Goodfellow, M. (1971). Numerical taxonomy of some nocardioform bacteria. J Gen Microbiol 69, 33-80.
8. Goodfellow, M. (1998). Nocardia and related genera. In Topley and Wilson's Microbiology and Microbial Infections, 9th edn, vol. 2, Systematic Bacteriology, pp. 463-489. Edited by A. Balows & B. I. Duerden. London: Arnold.
9. AL. In Bergey's Manual of Systematic Bacteriology, vol. 4, pp. 2350-2361. Edited by S. T. Williams, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
10. Goodfellow, M., Isik, K. & Yates, E. (1999). Actinomycete systematics: an unfinished synthesis. Nova Acta Leopold NF80, 47-82.
11. Gordon, R. E. & Mihm, J. M. (1957). A comparative study of some strains received as nocardiae. J Bacteriol 73, 15-27.
12. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
13. Gu, Q., Luo, H., Zheng, W., Liu, Z. & Huang, Y. (2006). Pseudonocardia oroxyli sp. nov., a novel actinomycete isolated from surface-sterilized Oroxylum indicum root. Int J Syst Evol Microbiol 56, 2193-2197.
14. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
15. Isik, K., Chun, J., Hah, Y. C. & Goodfellow, M. (1999). Nocardia uniformis nom. rev. Int J Syst Bacteriol 49, 1227-1230.
16. Itoh, J., Omoto, S., Nishizawa, N., Kodama, Y. & Inouye, S. (1982). Chemical structures of amicoumacins produced by Bacillus pumilus. Agric Biol Chem 46, 2659-2665.
17. Jones, K. L. (1949). Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57, 141-145.
18. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
19. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
20. Kinoshita, N., Homma, Y., Igarashi, M., Ikeno, S., Hori, M. & Hamada, M. (2001). Nocardia vinacea sp. nov. Actinomycetologica 15, 1-5.
21. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
22. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
23. Lechevalier, H. A. & Lechevalier, M. P. (1980). The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy, Special Publication 6, pp. 227-291. Edited by A. Dietz & D. W. Thayer. Arlington, VA: Society for Industrial Microbiology.
24. Lechevalier, M. P., De Bièvre, C. & Lechevalier, H. A. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249-260.
25. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
26. Minnikin, D. E., Alshamaony, L. & Goodfellow, M. (1975). Differentiation of Mycobacterium, Nocardia, and related taxa by thin-layer chromatographic analysis of whole-organism methanolysates. J Gen Microbiol 88, 200-204.
27. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
28. Mordarska, H., Mordarski, M. & Goodfellow, M. (1972). Chemotaxonomic characters and classification of some nocardioform bacteria. J Gen Microbiol 71, 77-86.
29. Rainey, F. A.,Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
30. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
31. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
32. Schaal, K. P. & Lee, H. J. (1992). Actinomycete infections in humans - a review. Gene 115, 201-211.
33. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
34. Sun, W., Huang, Y., Zhang, Y.-Q. & Liu, Z.-H. (2007). Streptomyces emeiensis sp. nov., a novel streptomycete from soil in China. Int J Syst Evol Microbiol 57, 1635-1639.
35. Trevisan, V. (1889). I Generi e le Specie delle Batteriacee. Milan: Zanaboni & Gabuzzi (in Italian).
36. Wallace, R. J.JrBrown, B. A., Tsukamura, M., Brown, J. M. & Onyi, G. O. (1991). Clinical and laboratory features of Nocardia nova. J Clin Microbiol 29, 2407-2411.
37. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
38. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
39. Yang, Z., Sun, W., Yang, J., Ding, Y., Si, S. & Zhang, Y. (2007). Study of the effect of a production of Nocardia 04-5195 amicoumacin B on BMP-2 gene. Chin Pharm J 42, 268-271.