Phylogeny and evolution of the Arctium-Cousinia complex (Compositae, Cardueae-Carduinae)

Taxon

Volumn 58, Issue 1, 2009, Pages 153-171

  López Vinyallonga, Sara ^a   Mehregan, Iraj ^b   Garcia Jacas, Núria ^a   Tscherneva, Olga ^c   Susanna, Alfonso ^a   Kadereit, Joachim W ^b  

^a INSTITUT BOTÀNIC DE BARCELONA IBB CSIC ICUB   (Spain)

^b JOHANNES GUTENBERG UNIVERSITY   (Germany)

^c KOMAROV BOTANICAL INSTITUTE   (Russian Federation)

Author keywords

Arctium; Cousinia; Irano Turanian region; ITS; Molecular clock; Pamir Alay; rpS4 trnT trnL; Speciation; Tien Shan

Indexed keywords

DICOTYLEDON; PHYLOGENETICS; PHYLOGENY; POLLEN; SPECIATION (BIOLOGY); SPECIES RICHNESS; TAXONOMY;

ASIA; EURASIA; IRAN; MIDDLE EAST;

ARCTIUM; ASTERACEAE; CARDUEAE; COUSINIA; HYPACANTHIUM; MYA; SCHMALHAUSENIA;

EID: 63449118031     PISSN: 00400262     EISSN: None     Source Type: Journal    
DOI: 10.1002/tax.581016     Document Type: Conference Paper

References (81)

1. Andreasen, K. & Baldwin, B.G. 2001. Unequal evolutionary rates between annual and perennial lineages of checker mallows (Sidalcea, Malvaceae): evidence from 18S-26S rDNA internal and external transcribed spacers. Molec. Biol. Evol. 18: 936-944.
2. Aryavand, A. 1975. Contribution à l'étude cytotaxonomique de quelques angiospermes de l'Iran. Bot. Not. 128: 299-311.
3. Boissier, E. 1875. Flora Orientalis, vol. 3. H. Georg, Geneva.
4. Boissier, E. 1888. Flora Orientalis Supplementum. R. Buser, Geneva, Basel, Lyon.
5. Bousquet, J., Strauss, S.H., Doerksen, A.H. & Price, R.A. 1992. Extensive variation in evolutionary rate of rbcL gene sequences among seed plants. Proc. Natl. Acad. Sci. U.S.A. 89: 7844-7848.
6. Bunge, A. von. 1865. Übersichtliche Zusammenstellung der Arten der Gattung Cousinia Cass. Mém. Acad. Imp. Sci. St.-Pétersbourg, Sér 7, 9: 1-56.
7. Candolle, A.P. de. 1838. Cousinia. Pp. 552-557 in: Prodromus systematis naturalis regni vegetabilis. Treuttel & Würtz, Paris.
8. Cassini, A.H.G. 1827. Carlinées-Prototypes. Pp. 498-505 in: Cuvier, G.-F. (ed.), Dictionnaire des Sciences Naturelles, vol. 47. L. Levrault, Strasbourg.
9. Cronn, R.C., Small, R.L., Haselkorn, T. & Wendel, J.F. 2002. Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes. Amer. J. Bot. 89: 707-725.
10. Culling, K.W. 1992. Design and testing of plant-specific PCR primer for ecological and evolutionary studies. Molec. Ecol. 1: 223-240.
11. Dittrich, M. 1977. Cynareae - systematic review. Pp. 999-1015 in: Heywood, V.H., Harborne, J.B. & Turner, B.L. (eds.), The Biology and Chemistry of the Compositae, vol. 2. Academic Press, London.
12. Doyle, J.J. & Doyle, J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
13. Duistermaat, H. 1996. Monograph of Arctium L. (Asteraceae). Generic delimitation (including Cousinia Cass. p. p.), revision of the species, pollen morphology and hybrids. Gorteria 3: 1-143.
14. Duistermaat, H. 1997. Arctium getting entangled to Cousinia (Asteraceae: Cardueae). Bocconea 5: 685-689.
15. Farris, J.S., Källersjö, M., Kluge, A.M. & Bult, C. 1994. Testing significance of incongruence. Cladistics 10: 315-319.
16. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
17. Felsenstein, J. 1988. Phylogenies from molecular sequences: inference and reliability. Annual Rev. Genet. 22: 521-565.
18. Font, M., Garnatje, T., Garcia-Jacas, N. & Susanna, A. 2002. Delineation and phylogeny of Centaurea sect. Acrocentron based on DNA sequences: a restoration of the genus Crocodylium and indirect evidence of introgression. Pl. Syst. Evol. 234: 15-26.
19. Frackman, S., Kobs, G., Simpson, D. & Storts, D. 1998. Betaine and DMSO: enhancing agents for PCR. Promega Notes 65: 27-29.
20. Frenzel, B., Pécsi, M. & Velichko, A.A. 1992. Atlas of Paleoclimates and Paleoenvironments of the Northern Hemisphere. Geographical Research Institute, Hungarian Academy of Sciences, Budapest; Gustav Fischer Verlag, Stuttgart.
21. Frodin, D.G. 2004. History and concepts of big plant genera. Taxon 53: 753-776.
22. Garcia-Jacas, N., Garnatje, T., Susanna, A. & Vilatersana, R. 2002. Tribal and subtribal delimitation and phylogeny of the Cardueae (Asteraceae): a combined nuclear and chloroplast DNA analysis. Molec. Phylog. Evol. 22: 51-64.
23. Garcia-Jacas, N., Susanna, A., Garnatje, T. & Vilatersana, R. 2001. Generic delimitation and phylogeny of the subtribe Centaureinae (Asteraceae): a combined nuclear and chloroplast DNA analysis. Ann. Bot. 87: 503-515.
24. Garnatje, T., Susanna, A., Garcia-Jacas, N. & Vilatersana, R. & Vallès, J. 2005. A first approach to the molecular phylogeny of the genus Echinops (Asteraceae): Sectional delimitation and relationships with the genus Acantholepis Less. Folia Geobot. 40: 407-419.
25. Ghaffari, S.M., Garcia-Jacas, N. & Susanna, A. 2006. New chromosome counts in the genus Cousinia (Asteraceae) from Iran. Bot. J. Linn. Soc. 151: 411-419.
26. González-Albaladejo, R., Fuertes, J., Aparicio, A. & Nieto, G. 2005. Contrasting nuclear-plastidial phylogenetic patterns in the recently diverged iberian Phlomis crinita and P. lychnitis L. lineages (Lamiaceae). Taxon 54: 987-998.
27. Häffner, E. & Hellwig, F.H. 1999. Phylogeny of the tribe Cardueae (Compositae) with emphasis on the subtribe Carduinae: an analysis based on ITS sequence data. Willdenowia 29: 27-39.
28. Häffner, E. 2000. On the phylogeny of the subtribe Carduinae (tribe Cardueae, Compositae). Englera 21: 1-209
29. Huelsenbeck, J.P. & Ronquist, F.R. 2001. MrBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
30. Kadereit, J.W., Griebeler, E.M. & Comes, H.P. 2004. Quaternary diversification in European alpine plants - pattern and process. Philos. Trans., Ser. B 359: 265-274.
31. Kay, K.M., Whittall, J.B. & Hodge, S.A. 2006. A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evol. Biol. 6: 36, doi: 10.1186/1471-2148-6-36.
32. Knapp, H.D. 1987. On the distribution of the genus Cousinia (Compositae). Pl. Syst. Evol. 155: 15-25.
33. Kuntze, O. 1891. Revisio generum plantarum, vol. 1: 306-308. A. Felix, Leipzig.
34. Kuprianova, L.A. & Tscherneva, O.V. 1982. Morfologija pyl'tzy I ultraskulptura palinodermy vidov roda Cousinia (Asteraceae) v svjazi s sistematikoi roda [Pollen morphology and ultrastructure of palynoderma in the species of the genus Cousinia (Asteraceae) in relation to the systematics of the genus]. Bot. Zhurn. (Moscow & Leningrad) 67: 581-589.
35. Laroche, J., Li, P., Magia, L. & Bousquet, J. 1997. Molecular evolution of angiosperm mitochondrial introns and exons. Proc. Natl. Acad. Sci. U.S.A. 94: 5722-5727.
36. Lidén, M., Fukuhara, T., Rylander, J. & Oxelman, B. 1997. Phylogeny and classification of Fumariaceae, with emphasis on Dicentra s.l., based on the plastid gene rps16 intron. Pl. Syst. Evol. 206: 411-420.
37. Mabberley, D.J. 2008. Mabberley's Plant Book, ed. 3. Cambridge University Press, Cambridge.
38. Maddison, W.P. & Maddison, D.R. 2000. MacClade: Analysis of Phylogeny and Character Evolution, version 4.0. Sinauer, Sunderland.
39. Mai, D. 2001. Die mittelmiozänen und obermiozänen Floren aus der Meuroer und Raunoer Folge in der Lausitz. Teil III: Fundstellen und Paläobiologie. Palaeontographica, Abt. B, Paläophytol. 258: 1-85.
40. Mehregan, I. & Kadereit, J.W. 2008. Taxonomic revision of Cousinia sect. Cynaroideae (Asteraceae, Cardueae). Willdenowia 38: 293-362.
41. Mehregan, I. & Kadereit, J.W. In press. The role of hybridization in the evolution of Cousinia s.s. (Asteraceae). Willdenowia.
42. Meusel, H., Jäger, E. & Weinert, E. 1965. Vergleichende Chorologie der zentraleuropäischen Flora, vol. 1. Fischer, Jena.
43. Morrison, D. 2007. Accelerating Maximum-likelihood Searches Using PAUP*. Department of Parasitology (SWEPAR), National Veterinary Institute and Swedish University of Agricultural Sciences, Uppsala, Sweden.
44. Muir, G. & Schlötterer, C. 1999. Limitations to the phylogenetic use of ITS sequences in closely related species and populations - a case study in Quercus petraea (Matt.) Liebl. Chapter 11 in: Gillet, E.M. (ed.), Which DNA Marker for Which Purpose? Final Compendium of the Research Project "Development, optimization and validation of molecular tools for assessment of biodiversity in forest trees" in the European Union DGXII Biotechnology FW IV Research Program Molecular Tools for Biodiversity. Wiedebusch, Hamburg.
45. Nieto-Feliner, G., Fuertes-Aguilar, J. & Rosselló, J.A. 2001. Can extensive reticulation and concerted evolution result in a cladistically structured molecular dataset? Cladistics 17: 301-312.
46. Nixon, K.C. 1999. The Parsimony Ratchet, a new method for rapid parsimony analysis. Cladistics 15: 407-414.
47. Nylander, J.A.A. 2004. MrModeltest, v2.2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala.
48. Petit, D.P. 1997. Generic interrelationships of the Cardueae (Compositae): a cladistic analysis of morphological data. Pl. Syst. Evol. 207: 173-203.
49. Petit, D.P., Mathez, J. & Qaid, A. 1996. Early differentiation of the Cardueae sensu lato: morphology and pollen. Pp. 79-93 in: Hind, D.J.N. & Beentje, H.J. (eds.), Proceedings of the International Compositae Conference, Kew, 1994, vol. 1, Compositae Systematics. Royal Botanic Gardens, Kew.
50. Posada, D. & Crandall, K.A. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
51. Posada, D. & Crandall, K.A. 2001. Selecting the best-fit model of nucleotide substitution. Syst. Biol. 50: 580-601.
52. Punt, W. & Hoen, P.P. 2009. The Northwest European Pollen Flora, 70. Asteraceae - Asteridae. Rev. Paleobot. Palynol. Available at http://www.bio.uu.nl/~palaeo/research/NEPF/nepf.htm.
53. Rechinger, K.H. 1953. Cousinia-Studien. Österr. Bot. Z. 100: 437-477.
54. Rechinger, K.H. 1972. Compositae-Cynareae I: Cousinia. Pp. 1-329 in: Rechinger, K.H. (ed.), Flora Iranica, vol. 90. Akademische Druck- und Verlagsanstalt, Graz.
55. Rechinger, K.H. 1979. Compositae-Cynareae III: Cousinia. Pp. 105-156 in: Rechinger, K.H. (ed.), Flora Iranica, vol. 90. Akademische Druck- und Verlagsanstalt, Graz.
56. Rechinger, K.H. 1986. Cousinia-morphology, taxonomy and phytogeographic implications. Proc. Roy. Soc. Edinburgh, B 89: 45-58.
57. Schtepa, I.S. 1966. K voprosu o svjazi rodov Arctium L. i Cousinia Cass. sem. Compositae [On the problem of the affinity between the genera Arctium L. & Cousinia Cass. of the family Compositae]. Pp. 35-36 in: Nejshtadt, M.I. (ed.), The Importance of Palynological Analysis for the Stratigraphy and Paleofloristic Investigation. Academy of Sciences "Nauka", Moscow.
58. Schtepa, I.S. 1976. Palinologicheskoe issledovanie vidov seksii Eriocousinia roda Cousinia Cass. (Compositae) [Palynological investigation of Cousinia sect. Eriocousinia (Compositae)]. Pp. 31-33 in: Zaklinskaj, E.D. & Nejshtadt, M.I. (eds.), Proceedings of the 4th International Palynological Conference. Academy of Sciences of the USSR, Leningrad.
59. Shaw, J., Lickey, E.B., Beck, J.T., Farmer, S.B., Liu, W., Miller, J., Siripun, K.C., Winder, C.T., Schilling, E.E. & Small, R.L. 2005. The tortoise and the hare II: ∧relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. Amer. J. Bot. 92: 142-166.
60. Sikes, D.S. & Lewis, P.O. 2001. Beta Software, Version 1. PAUP-Rat: PAUP* Implementation of the Parsimony Ratchet. Distributed by the authors. Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs.
61. Suárez-Santiago, V.N., Salinas, M.J., Garcia-Jacas, N., Soltis, P.S., Soltis, D.E. & Blanca, G. 2007. Evolution by reticulation of the Acrolophus subgroup (Centaurea L., Compositae) in the occidental Mediterranean: origin and diversification of the section Willkommia Blanca. Molec. Phylog. Evol. 43: 156-172.
62. Susanna, A. & Garcia-Jacas, N. 2007. Tribe Cardueae. Pp. 123-146 in: Kadereit, J.W. & Jeffrey, C. (eds.), The Families and Genera of Vascular Plants, vol. 8, Flowering Plants. Eudicots. Asterales. Springer, Berlin & Heidelberg.
63. Susanna, A., Garcia-Jacas, N., Hidalgo, O., Vilatersana, R. & Garnatje, T. 2006. The Cardueae (Compositae) revisited: insights from ITS, trnL-trnF, and matK nuclear and chloroplast DNA analysis. Ann. Missouri Bot. Gard. 93: 150-171.
64. Susanna, A., Garcia-Jacas, N., Vilatersana, R. & Garnatje, T. 2003a. Generic boundaries and evolution of characters in the Arctium group: a nuclear and chloroplast DNA analysis. Collect. Bot. (Barcelona) 26: 101-118.
65. Susanna, A., Garcia-Jacas, N., Vilatersana, R., Garnatje, T., Vallès, J. & Ghaffari, S.M. 2003b. New chromosome counts in the genus Cousinia and the related genus Schmalhausenia (Asteraceae, Cardueae). Bot. J. Linn. Soc. 43: 411-418.
66. Swofford, D.L. 2002. PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4.0b 10. Sinauer, Sunderland.
67. Swofford, D.L. & Olsen, G.J. 1990. Phylogeny reconstruction. Pp. 411-501 in Hillis, D.M. & Moritz, C. (eds.), Molecular Systematics. Sinauer, Sunderland.
68. Taberlet, P., Gielly, L., Pautou, G. & Bouvet, J. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Pl. Molec. Biol. 17: 1105-1109.
69. Tscherneva, O.V. 1962. Cousinia Cass. Pp. 108-357 in: Shishkin, B.K. (ed.), [Flora of the U.S.S.R.], vol. 27: Akademiya Nauk, Leningrad.
70. Tscherneva, O.V. 1982. Rod Hypacanthium (Asteraceae) i ego predstaviteli v Srednej Asii [The genus Hypacanthium (Asteraceae) and its representatives in Middle Asia]. Bot. Zhurn. (Moscow & Leningrad) 68: 632-635.
71. Tscherneva, O.V. 1985. Chisla khromosom vidov roda Cousinia (Asteraceae) flory SSSR [Chromosome numbers in the species of the genus Cousinia (Asteraceae) in the flora of the U.S.S.R.]. Bot. Zhurn. (Moscow & Leningrad) 70: 855-857.
72. Tscherneva, O.V. 1988a. Novye nadvidovye taksony roda Cousinia (Asteraceae) [New supraspecific taxa of the genus Cousinia (Asteraceae)]. Bot. Zhurn. (Moscow & Leningrad) 73: 594-597.
73. Tscherneva, O.V. 1988b. Konspekt sistemy roda Cousinia Cass. (Asteraceae) flory SSSR [A synopsis of the Cousinia (Asteraceae) genus system in the flora of the U.S.S.R.]. Bot. Zhurn. (Moscow & Leningrad) 73: 870-876.
74. Tscherneva, O.V. 1988c. The Cousinia of the SSSR. Akademiya Nauk, Leningrad. [In Russian]
75. Vilatersana, R., Martín-Villodre, J., Susanna, A., Garcia-Jacas, N. & Garnatje, T. 2001. Pollen studies in subtribe Centaureinae (Asteraceae): the Carthamus complex and the genus Aegialophila analyzed with electron microscopy. Pl. Biol. 3: 607-615.
76. Vriesendorp, B. & Bakker, F.T. 2005. Reconstructing patterns of reticulate evolution in angiosperms: What can we do? Taxon 54: 593-604.
77. Winkler, C. 1892. Synopsis specierum generis Cousiniae. Trudy Imp. S.-Peterburgsk. Bot. Sada 12: 181-286.
78. Winkler, C. 1897. Mantissa synopsis specierum generis Cousiniae. Trudy Imp. S.-Peterburgsk. Bot. Sada 14: 187-243.
79. Zhang, M.-L., Uhink, C.H. & Kadereit, J.W. 2007. Phylogeny and biogeography of Epimedium/Vancouveria (Berberidaceae): Western North American-East Asian disjunctions, the origin of European mountain plant taxa, and East Asian species diversity. Syst. Bot. 32: 81-92.
80. Zharkikh, A. 1994. Estimation of evolutionary distances between nucleotide sequences. J. Molec. Evol. 39: 315-329.
81. Zohary, M. 1973. Geobotanical Foundations of the Middle East. Gustav Fischer Verlag, Stuttgart; Swets & Zeitlinger, Amsterdam.