Kiloniella laminariae gen. nov., sp. nov., an alphaproteobacterium from the marine macroalga Laminaria saccharina

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 2, 2009, Pages 350-356

  Wiese, Jutta ^a   Thiel, Vera ^a   Gärtner, Andrea ^a   Schmaljohann, Rolf ^a   Imhoff, Johannes F ^a  

^a GEOMAR HELMHOLTZ CENTRE FOR OCEAN RESEARCH KIEL   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; CYTOSINE; GUANINE; RNA 16S; SODIUM CHLORIDE; FATTY ACID;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; DENITRIFICATION; DNA CONTENT; KILONIELLA LAMINERIAE; LAMINARIA SACCHARINA; MACROALGA; MARINE SPECIES; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE HOMOLOGY; TEMPERATURE; TERASAKIELLA PUSILLA; THALASSOSPIRA; UNINDEXED SEQUENCE; BIOLOGY; CHEMISTRY; CLASSIFICATION; GENETICS; LAMINARIA; MICROBIOLOGY; MOLECULAR GENETICS; SCANNING ELECTRON MICROSCOPY; SPECIES DIFFERENCE; ULTRASTRUCTURE;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); SACCHARINA LATISSIMA; TERASAKIELLA PUSILLA; THALASSOSPIRA;

ALPHAPROTEOBACTERIA; FATTY ACIDS; LAMINARIA; MARINE BIOLOGY; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SPECIES SPECIFICITY;

EID: 63449106239     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.001651-0     Document Type: Article

References (31)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Boyde, A. & Wood, C. (1969). Preparation of animal tissues for surface-scanning electron microscopy. J Microsc 90, 221-249.
3. Cho, J.-C. & Giovannoni, S. J. (2003). Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the α-Proteobacteria. Int J Syst Evol Microbiol 53, 1031-1036.
4. de Lajudie, P., Willems, A., Pot, B., Dewettinick, D., Maestrojuan, G., Neyra, M., Collins, M. D., Dreyfus, B., Kersters, K. & Gillis, M. (1994). Polyphasic taxonomy of rhizobia: emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov. Int J Syst Bacteriol 44, 715-733.
5. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
6. Fukunaga, Y., Kurahashi, M., Tanaka, K., Yanagi, K., Yokota, A. & Harayama, S. (2006). Pseudovibrio ascidiaceicola sp. nov., isolated from ascidians (sea quirts). Int J Syst Evol Microbiol 56, 343-347.
7. Garrity, G. M., Bell, J. A. & Lilburn, T. (2005). Class I. Alphaproteobacteria class. nov. In Bergey's Manual of Systematic Bacteriology, vol. 2, part C, p. 1. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
8. Gärtner, A., Wiese, J. & Imhoff, J. F. (2008). Amphritea atlantica gen. nov., sp. nov., a gammaproteobacterium from the Logatchev hydrothermal vent field. Int J Syst Evol Microbiol 58, 34-39.
9. Giovannoni, S. & Rappé, M. (2000). Evolution, diversity, and molecular ecology of marine prokaryotes. In Microbial Ecology of the Oceans, pp. 47-84. Edited by D. L. Kirchman. New York: Wiley-Liss.
10. Gregersen, T. (1978). Rapid method for distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5, 123-127.
11. Guindon, S., Lethiec, F., Duroux, P. & Gascuel, O. (2005). PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33, W557-W559.
12. Kämpfer, P., Müller, C., Mau, M., Neef, A., Auling, G., Busse, H.-J., Osborn, A. M. & Stolz, A. (1999). Description of Pseudaminobacter gen. nov. with two new species, Pseudaminobacter salicylatoxidans sp. nov. and Pseudaminobacter defluvii sp. nov. Int J Syst Bacteriol 49, 887-897.
13. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
14. Kwon, K. K., Lee, H.-S., Yang, S. H. & Kim, S.-J. (2005). Kordiimonas gwangyangensis gen. nov., sp. nov., a marine bacterium isolated from sediments that forms a distinct phyletic lineage ( Kordiimonadales ord. nov.) in the 'Alphaproteobacteria'. Int J Syst Evol Microbiol 55, 2033-2037.
15. Liu, C., Wu, Y., Li, L., Ma, Y. & Shao, Z. (2007). Thalassospira xiamenensis sp. nov. and Thalassospira profundimaris sp. nov. Int J Syst Evol Microbiol 57, 316-320.
16. López-López, A., Pujalte, M. J., Benlloch, S., Mata-Roig, M., Rosselló-Mora, R., Garay, E. & Rodríguez-Valera, F. (2002). Thalassospira lucentensis gen. nov., sp. nov., a new marine member of the α-Proteobacteria. Int J Syst Evol Microbiol 52, 1277-1283.
17. Ludwig, W., Stunk, O., Westram, R., Richter, L., Meir, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
18. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
19. Rzhetsky, A. & Nei, M. (1993). Theoretical foundation of the minimum-evolution method of phylogenetic inference. Mol Biol Evol 10, 1073-1095.
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
21. Sakane, T. & Yokota, A. (1994). Chemotaxonomic investigation of heterotrophic, aerobic and microaerophilic spirilla, the genera Aquaspirillum, Magnetospirillum and Oceanospirillum. Syst Appl Microbiol 17, 128-134.
22. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
23. Satomi, M., Kimura, B., Hamada, T., Harayama, S. & Fujii, T. (2002). Phylogenetic study of the genus Oceanospirillum based on 16S rRNA and gyrB genes: emended description of the genus Oceanospirillum, description of Pseudospirillum gen. nov., Oceanobacter gen. nov. and Terasakiella gen. nov. and transfer of Oceanospirillum jannaschii and Pseudomonas stanieri to Marinobacterium as Marinobacterium jannaschii comb. nov. and Marinobacterium stanieri comb. nov. Int J Syst Evol Microbiol 52, 739-747.
24. Shi, B.-H., Arunpairojana, V., Palakawong, S. & Yokota, A. (2002). Tistrella mobilis gen. nov., sp. nov., a novel polyhydroxyalkanoate-producing bacterium belonging to the alpha- Proteobacteria. J Gen Appl Microbiol 48, 335-343.
25. Shieh, W. Y., Lin, Y.-T. & Jean, W. D. (2004). Pseudovibrio denitrificans gen. nov., sp. nov., a marine, facultatively anaerobic, fermentative bacterium capable of denitrification. Int J Syst Evol Microbiol 54, 2307-2312.
26. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
27. Tatusova, T. A. & Madden, T. L. (1999). BLAST 2 sequences - a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 174, 247-250.
28. Terasaki, Y. (1979). Transfer of five species and two subspecies of Spirillum to other genera (Aquaspirillum and Oceanospirillum), with emended description of the species and subspecies. Int J Syst Bacteriol 29, 130-144.
29. Velázquez, E., Igual, J. M., Willems, A., Fernández, M. P., Muñoz, E., Mateos, P. F., Abril, A., Toro, N., Normand, P. & other authors (2001). Mesorhizobium chacoense sp. nov., a novel species that nodulates Prosopis alba in the Chaco Arido region (Argentina). Int J Syst Evol Microbiol 51, 1011-1021.
30. Wang, Q., Garrity, G. M., Tiedje, J. M. & Cole, J. R. (2007). Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73, 5261-5267.
31. Young, J. M. (2003). The genus Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination 'Sinorhizobium adhaerens' (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion. Int J Syst Evol Microbiol 53, 2107-2110.