Differential parental transmission of markers in BCL3 among Korean cleft case-parent trios

Journal of Preventive Medicine and Public Health

Volumn 42, Issue 1, 2009, Pages 1-4

  Park, Beyoung Yun ^a   Sull, Jae Woong ^b   Park, Jung Yong ^b   Jee, Sun Ha ^b   Beaty, Terri H ^c  

^a Yonsei University College of Medicine   (South Korea)

^b Yonsei University   (South Korea)

^c JOHNS HOPKINS BLOOMBERG SCHOOL OF PUBLIC HEALTH   (United States)

Author keywords

BCL3; Maternal transmission effects; Oral cleft; Parent of origin

Indexed keywords

PROTEIN BCL 3;

ADOLESCENT; ARTICLE; CHILD; CLEFT LIP; CLEFT PALATE; CLINICAL ARTICLE; FEMALE; GENE FREQUENCY; GENOTYPE; HAPLOTYPE; HUMAN; INFANT; KOREA; MALE; PRESCHOOL CHILD; SCHOOL CHILD; SINGLE NUCLEOTIDE POLYMORPHISM; ADULT; ALGORITHM; ALLELE; CHI SQUARE DISTRIBUTION; CHROMOSOME 19; GENETIC MARKER; GENETIC PREDISPOSITION; GENETICS; MONTE CARLO METHOD; RISK; RISK FACTOR;

ADOLESCENT; ADULT; ALGORITHMS; ALLELES; CHI-SQUARE DISTRIBUTION; CHILD; CHILD, PRESCHOOL; CHROMOSOMES, HUMAN, PAIR 19; CLEFT LIP; CLEFT PALATE; FEMALE; GENETIC MARKERS; GENETIC PREDISPOSITION TO DISEASE; GENOTYPE; HAPLOTYPES; HUMANS; INFANT; KOREA; MALE; MONTE CARLO METHOD; ODDS RATIO; POLYMORPHISM, SINGLE NUCLEOTIDE; RISK FACTORS; YOUNG ADULT;

EID: 63449091636     PISSN: 19758375     EISSN: None     Source Type: Journal    
DOI: 10.3961/jpmph.2009.42.1.1     Document Type: Article

References (30)

1. Cobourne MT. The complex genetics of cleft lip and palate. Eur J Orthod 2004; 26(1): 7-16. (Pubitemid 41296499)
2. Wyszynski DF, Duffy DL, Beaty TH. Maternal cigarette smoking and oral clefts: A metaanalysis. Cleft Palate Craniofac J 1997; 34(3): 206-210. (Pubitemid 27220839)
3. Carinci F, Scapoli L, Palmieri A, Zollino I, Pezzetti F. Human genetic factors in nonsyndromic cleft lip and palate: An update. Int J Pediatr Otorhinolaryngol 2007; 71(10): 1509-1519. (Pubitemid 47376750)
4. van den Boogaard MJ, Dorland M, Beemer FA, van Amstel HK. MSX1 mutation is associated with orofacial clefting and tooth agenesis in humans. Nat Genet 2000; 24(4): 342-343. (Pubitemid 30187429)
5. Zucchero TM, Cooper ME, Maher BS, Daack- Hirsch S, Nepomuceno B, Ribeiro L, et al. Interferon regulatory factor 6 (IRF6) gene variants and the risk of isolated cleft lip or palate. N Engl J Med 2004; 351(8): 769-780. (Pubitemid 39095312)
6. Gaspar DA, Matioli SR, Pavanello RC, Araújo BC, André M, Steman S, et al. Evidence that BCL3 plays a role in the etiology of nonsyndromic oral clefts in Brazilian families. Genet Epidemiol 2002; 23(4): 364-374. (Pubitemid 35416674)
7. Martinelli M, Scapoli L, Pezzetti F, Carinci F, Carinci P, Baciliero U, et al. Suggestive linkage between markers on chromosome 19q13.2 and nonsyndromic orofacial cleft malformation. Genomics 1998; 51(2): 177-181. (Pubitemid 28395022)
8. Beaty TH, Wang H, Hetmanski JB, Fan YT, Zeiger JS, Liang KY, et al. A case-control study of nonsyndromic oral clefts in Maryland. Ann Epidemiol 2001; 11(6): 434-442.
9. Weinberg CR, Umbach DM. A hybrid design for studying genetic influences on risk of diseases with onset early in life. Am J Hum Genet 2005; 77(4): 627-636. (Pubitemid 41361609)
10. Wilkins JF, Haig D. What good is genomic imprinting: The function of parent-specific gene expression. Nat Rev Genet 2003; 4(5): 359-368. (Pubitemid 36538360)
11. Jugessur A, Wilcox AJ, Lie RT, Murray JC, Taylor JA, Ulvik A, et al. Exploring the effects of methylenetetrahydrofolate reductase genevariants C677T and A1298C on the risk of orofacial clefts in 261 Norwegian case-parent triads. Am J Epidemiol 2003; 157(12): 1083- 1091.
12. Rubini M, Brusati R, Garattini G, Magnani C, Liviero F, Bianchi F, et al. Cystathionine betasynthase c.844ins68 gene variant and nonsyndromic cleft lip and palate. Am J Med Genet A 2005; 136A(4): 368-372. (Pubitemid 41076590)
13. Sull JW, Liang KY, Hetmanski JB, Fallin MD, Ingersoll RG, Park J, et al. Differential parental transmission of markers in RUNX2 among cleft case-parent trios from four populations. Genet Epidemiol 2008; 32(6): 505-512.
14. van Rooij IA, Vermeij-Keers C, Kluijtmans LA, Ocke MC, Zielhuis GA, Goorhuis- Brouwer SM, et al. Does the interaction between maternal folate intake and the methylenetetrahydrofolate reductase polymorphisms affect the risk of cleft lip with or without cleft palate? Am J Epidemiol 2003; 157(7): 583-591. (Pubitemid 36368528)
15. Bellus GA, Hefferon TW, Ortiz de Luna RI, Hecht JT, Horton WA, Machado M, et al. Achondroplasia is defined by recurrent G380R mutations of FGFR3. Am J Hum Genet 1995; 56(2): 368-373.
16. Oliphant A, Barker DL, Stuelpnagel JR, Chee MS. BeadArray technology: Enabling an accurate, cost-efficient approach to highthroughput genotyping. Biotechniques 2002; Suppl: 56-61.
17. Fan JB, Oliphant A, Shen R, Kermani BG, Garcia F, Gunderson KL, et al. Highly parallel SNP genotyping. Cold Spring Harb Symp Quant Biol 2003; 68: 69-78. (Pubitemid 38955554)
18. Barrett JC, Fry B, Maller J, Daly MJ. Haploview: Analysis and visualization of LD and haplotype maps. Bioinformatics 2005; 21(2): 263-265. (Pubitemid 40202029)
19. Spielman RS, McGinnis RE, Ewens WJ. Transmission test for linkage disequilibrium: The insulin gene region and insulin-dependent diabetes mellitus (IDDM). Am J Hum Genet 1993; 52(3): 506-516. (Pubitemid 23311321)
20. Cordell HJ, Barratt BJ, Clayton DG. Case/pseudocontrol analysis in genetic association studies: A unified framework for detection of genotype and haplotype associations, gene-gene and gene-environment interactions, and parent-of-origin effects. Genet Epidemiol 2004; 26(3): 167-185. (Pubitemid 38420332)
21. Becker T, Knapp M. Maximum-likelihood estimation of haplotype frequencies in nuclear families. Genet Epidemiol 2004; 27(1): 21-32. (Pubitemid 38808342)
22. Knapp M, Becker T. Family-based association analysis with tightly linked markers. Hum Hered 2003; 56(1-3): 2-9. (Pubitemid 37465065)
23. Zhao H, Zhang S, Merikangas KR, Trixler M, Wildenauer DB, Sun F, et al. Transmission/ disequilibrium tests using multiple tightly linked markers. Am J Hum Genet 2000; 67(4): 936-946.
24. Franzoso G, Bours V, Azarenko V, Park S, Tomita-Yamaguchi M, Kanno T, et al. The oncoprotein Bcl-3 can facilitate NF-kappa Bmediated transactivation by removing inhibiting p50 homodimers from select kappa B sites. EMBO J 1993; 12(10): 3893-3901. (Pubitemid 23282765)
25. Fujita H, Nagata M, Ono K, Okubo H, Takagi R. Linkage analysis between BCL3 and nearby genes on 19q13.2 and non-syndromic cleft lip with or without cleft palate in multigenerational Japanese families. Oral Dis 2004;10(6): 353-359. (Pubitemid 39564350)
26. Suazo J, Santos JL, Silva V, Jara L, Palomino H, Blanco R. Possible association due to linkage disequilibrium of TGFA, RARA and BCL3 with nonsyndromic cleft lip with or without cleft palate in the Chilean population. Rev Med Chil 2005; 133(9): 1051-1058. (Spanish)
27. Reutter H, Birnbaum S, Mende M, Lauster C, Schmidt G, Henschke H, et al. TGFB3 displays parent-of-origin effects among central Europeans with nonsyndromic cleft lip and palate. J Hum Genet 2008; 53(7): 656-661.
28. Gaspar DA, Matioli SR, de Cássia Pavanello R, Araújo BC, Alonso N, Wyszynski D, et al. Maternal MTHFR interacts with the offspring s BCL3 genotypes, but not with TGFA, in increasing risk to nonsyndromic cleft lip with or without cleft palate. Eur J Hum Genet 2004; 12(7): 521-526. (Pubitemid 39077159)
29. Sinsheimer JS, Palmer CG, Woodward JA. Detecting genotype combinations that increase risk for disease: Maternal-fetal genotype incompatibility test. Genet Epidemiol 2003; 24(1): 1-13. (Pubitemid 36077397)
30. Starr JR, Hsu L, Schwartz SM. Assessing maternal genetic associations: A comparison of the log-linear approach to case-parent triad data and a case-control approach. Epidemiology 2005; 16(3): 294-303. (Pubitemid 40586703)