DNA nucleic acid sequence-based amplification-based genotyping for polymorphism analysis

BioTechniques

Volumn 37, Issue 4, 2004, Pages 680-686

  Berard, Cecile ^a   Cazalis, Marie Angélique ^a   Leissner, Philippe ^a   Mougin, Bruno ^a  

^a BIOMÉRIEUX   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMPLIFICATION; BIOASSAY; CELLS; GENETIC ENGINEERING; RNA;

MULTIPLEX HYBRIDIZATION; NUCLEIC ACID SEQUENCE-BASED AMPLIFICATION (NASBA); SINGLE NUCLEOTIDE POLYMORPHISM (SNP);

DNA SEQUENCES;

AMINO ACID SUBSTITUTION; ARTICLE; CELL LINE; CLINICAL PROTOCOL; DIAGNOSTIC PROCEDURE; DIAGNOSTIC TEST; DNA SEQUENCE; GENOTYPE; HYBRIDIZATION; NUCLEIC ACID SEQUENCE BASED AMPLIFICATION; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 6344254863     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/04374dd04     Document Type: Article

References (22)

1. Giesendorf, B., J. Vet, S. Tyagi, E. Mensink, F. Trijbels, and H. Blom. 1998. Molecular beacons: a new approach for semi-automated mutation analysis. Clin. Chem. 44:482-486.
2. Kostrikis, L., Y. Huang, J. Moore, S. Wolinsky, L. Zhang, Y. Guo, L. Deutsch, J. Phair, et al. 1998. A chemokine receptor CCR2 allele delays HTV-1 disease progression and is associated with a CCR5 promoter mutation. Nat. Med. 4:350-353.
3. Gonzalez, E., M. Bamshad, N. Sato, S. Mummidi, R. Dhanda, G. Catano, S. Cabrera, M. McBride, et al. 1999. Race-specific HIV-1 disease-modifying effects associated with CCR5 haplotypes. Proc. Natl. Acad. Sci. USA 96:12004-12009.
4. Hu, X., B. Belachew, L. Chen, H. Huang, and J. Zhang. 2000. Fluorescence-based single tube assays to rapidly detect human gene mutations. Strategies 13:71-73.
5. Johnson, M., L. Haupt, and L. Griffiths. 2004. Locked nucleic acid (LNA) single nucleotide polymorphism (SNP) genotype analysis and validation using real-time PCR. Nucleic Acids Res. 32:e55.
6. Shi, M., D. Caprau, J. Dagle, L. Christiansen, K. Christensen, and J. Murray. 2004. Application of kinetic polymerase chain reaction and molecular beacon assays to pooled analyses and high-throughput genotyping for candidate genes. Birth Defects Res. Part A Clin. Mol. Teratol. 70:65-74
7. Tyagi, S., D. Brattu, and F. Kramer. 1998. Multicolor molecular beacons for allele discrimination. Nat. Biotechnol. 16:49-53.
8. Marras, S., F. Kramer, and S. Tyagi. 1999. Multiplex detection of single-nucleotide variations using molecular beacons. Genet. Anal. 14:151-156.
9. Marras, S., F. Kramer, and S. Tyagi. 2003. Genotyping SNPs with molecular beacons. Methods Mol. Biol. 212:111-128.
10. Tyagi, S., S. Marras, and F. Kramer. 2000. Wavelength-shifting molecular beacons. Nat. Biotechnol. 18:1191-1196.
11. Deiman, B., P. van Aarle, and P. Sillekens. 2002. Characteristics and applications of nucleic acid sequence based amplification (NASBA). Mol. Biotechnol. 20:163-179.
12. Darke, B., S. Jackson, S. Hanna, and J. Fox. 1998. Detection of human TNF-alpha mRNA by NASBA. J. Immunol. Methods 21:19-28.
13. Birch, L., C. Dawson, J. Cornett, and J. Keer. 2001. A comparison of nucleic amplification techniques for the assessment of bacterial viability. Lett. Appl. Microbiol. 33:296-301.
14. Borst, A., J. Verhoef, E. Boel, and A. Fluit. 2002. Clinical evaluation of a NASBA-based assay for detection of Candida spp. in blood and blood cultures. Clin. Lab. 45:487-492.
15. Polstra, A.M., J. Goudsmit, and M. Cornelissen. 2002. Development of real-time NASBA assays with molecular beacon detection to quantify mRNA coding for HHV-8 lytic and latent genes. BMC Infect. Dis. 2:1-10.
16. Cook, N. 2003. The use of NASBA for the detection of microbial pathogens in food and environmental samples. J. Microbiol. Methods 53:165-174.
17. Hibbitts, S., A. Rahman, R. John, D. Westmoreland, and J. Fox. 2003. Development and evaluation of NucliSens basic kit NASBA for diagnosis of parainfluenza virus infection with 'end-point' and 'real-time' detection. J. Virol. Methods 108:145-155.
18. Gore, H., C. Wakeman, R. Hull, and J. McKillip. 2003. Real-time molecular beacon NASBA reveals hblC expression from Bacillus spp. in milk. Biochem. Biophys. Res. Commun. 311:386-390.
19. Guichon, A., H. Chiparelli, A. Martinez, C. Rodriguez, A. Trento, J. Russi, and G. Carballal. 2004. Evaluation of a new NASBA assay for the qualitative detection of hepatitis C virus based on the NucliSens Basic Kit reagents. J. Clin. Virol. 29:84-91.
20. Compton, J. 1991. Nucleic acid sequence-based amplification. Nature 350:91-92.
21. Voisset, C., B. Mandrand, and G. Paranhos-Baccalà. 2000. RNA amplification technique NASBA also amplifies homologous plasmid DNA in non-denaturing conditions. BioTechniques 29:236-240.
22. Bertina, R., B. Koeleman, T. Koster, F. Rosendaal, R. Dirven, H. de Ronde, P. van der Velden, and P. Reitsma. 1994. Mutation in blood coagulation factor V associated with resistance to activated protein C. Nature 369:64-67.