Atlas-based segmentation of pathological MR brain images using a model of lesion growth

IEEE Transactions on Medical Imaging

Volumn 23, Issue 10, 2004, Pages 1301-1314

  Cuadra, Meritxell Bach ^a   Polio, Claudio ^a,b   Bardera, Anton ^a   Cuisenaire, Olivier ^a   Villemure, Jean Guy ^b   Thiran, Jean Philippe ^a  

^a EPFL   (Switzerland)

^b LAUSANNE UNIVERSITY HOSPITAL   (Switzerland)

Author keywords

Atlases; Magnetic resonance (MR) imaging; Pathological brains; Registration; Segmentation

Indexed keywords

ALGORITHMS; BRAIN; MAXWELL EQUATIONS; NEUROSURGERY; PATIENT MONITORING; RADIOTHERAPY; TUMORS;

ATLASES; BIOMEDICAL DEFORMATION MODEL; PATHOLOGICAL BRAINS; REGISTRATION;

MAGNETIC RESONANCE IMAGING;

ALGORITHM; ANATOMY; ARTICLE; ARTIFICIAL INTELLIGENCE; AUTOMATED PATTERN RECOGNITION; BIOLOGICAL MODEL; BRAIN TUMOR; CLUSTER ANALYSIS; COMPARATIVE STUDY; COMPUTER ASSISTED DIAGNOSIS; COMPUTER SIMULATION; EVALUATION; HUMAN; IMAGE ENHANCEMENT; IMAGE SUBTRACTION; INFORMATION RETRIEVAL; MEDICAL ILLUSTRATION; MENINGIOMA; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE IMAGING; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; STATISTICAL MODEL; THREE DIMENSIONAL IMAGING; VALIDATION STUDY;

ALGORITHMS; ANATOMY, ARTISTIC; ARTIFICIAL INTELLIGENCE; BRAIN NEOPLASMS; CLUSTER ANALYSIS; COMPUTER SIMULATION; HUMANS; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; INFORMATION STORAGE AND RETRIEVAL; MAGNETIC RESONANCE IMAGING; MEDICAL ILLUSTRATION; MENINGEAL NEOPLASMS; MENINGIOMA; MODELS, BIOLOGICAL; MODELS, STATISTICAL; PATTERN RECOGNITION, AUTOMATED; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SUBTRACTION TECHNIQUE;

EID: 6344221605     PISSN: 02780062     EISSN: None     Source Type: Journal    
DOI: 10.1109/TMI.2004.834618     Document Type: Article

References (19)

1. S. K. Kyriacou and C. Davatzikos, "Nonlinear elastic registration of brain images with tumor pathology using a biomechanical model," IEEE Trans. Med. Imag., vol. 18, pp. 580-592, July 1999.
2. B. M. Dawant, S. L. Hartmann, and S. Gadamsetty, "Brain atlas deformation in the presence of large space-occupying tumors," in Proc. 2nd Int. Conf. Medical Image Computing and Computer-Assisted Intervention, 1999, pp. 589-596.
3. J.-P. Thirion, "Image matching as a diffusion process: An analogy with Maxwell's demons," Med. Image Anal., vol. 2, no. 3, pp. 243-260, 1998.
4. M. Bach Cuadra, J. Gomez, P. Hagmann, C. Pollo, J.-G. Villemure, B. M. Dawant, and J.-P. Thiran, "Atlas-based segmentation of pathological brains using a model of tumor growth," in Proc. 2nd Int. Conf. Medical Image Computing and Computer-Assisted Intervention, 2002, pp. 380-387.
5. A. W. Toga, Brain Warping. Orlando, FL: Academic, 1999.
6. J.-P. Thirion, "Fast non-rigid matching of 3D medical images," INRIA, Tech. Rep. 2547, May 1995.
7. P. Cachier, X. Pennec, and N. Ayache, "Fast non-rigid matching by gradient descent: Study and improvements of the "demons" algorithm," INRIA, Tech. Rep. 3706, June 1999.
8. M. Bach Cuadra, "Atlas-based segmentation and classification of magnetic resonance brain images," Ph.D. dissertation, Swiss Federal Inst. Technol., Lausanne, Switzerland, Nov. 2003.
9. O. Cuisenaire, J.-P. Thiran, B. Macq, C. Michel, A. D. Volder, and F. Marques, "Automatic registration of 3D MR images with a computerized brain atlas," SPIE Med. Imag., vol. 1719, pp. 438-449, 1996.
10. P. Schroeter, "Unsupervised two-dimensional and three-dimensional image segmentation," Ph.D. dissertation, Swiss Federal Inst. Technol., Lausanne, Switzerland, 1996.
11. S. K. Warfield, M. Kaus, F. A. Jolesz, and R. Kikinis, "Adaptive, template moderated, spatially varying statistical classification," Med. Image Anal., vol. 4, pp. 43-55, Mar. 2000.
12. M. R. Kaus, S. K. Warfield, A. Nabavi, E. Chatzidakis, P. M. Black, F. A. Jolesz, and R. Kikinis, "Segmentation of meningiomas and low grade gliomas in MRI," in Proc. 2nd Int. Conf. Medical Image Computing and Computer-Assisted Intervention, 1999, pp. 1-10.
13. J. Gomez, "Brain atlas registration in presence of brain lesions," M.S. thesis, Swiss Federal Inst. Technol., Lausanne, Switzerland, [Online]. Available: http://ltswww.epfl.ch/~bach/RefsTMI/Jesus-GomezDiploma. pdf, 2001.
14. S. K. Warfield et al.. NSG brain tumor database. [Online]. Available: http://spl.bwh.harvard.edu:8000/~warfield/tumorbase/
15. R. Kikinis et al., "A digital brain atlas for surgical planning, model driven segmentation and teaching," IEEE Trans. Vis. Comput. Graph., vol. 2, pp. 232-241, Sept. 1996.
16. S. K. Warfield et al., "A binary entropy measure to assess nonrigid registration algorithms," in Proc. 2nd Int. Conf. Medical Image Computing and Computer-Assisted Intervention, 2001, pp. 266-274.
17. P. Hellier et al., "Retrospective evaluation of inter-subject brain registration," in Proc. 2nd Int. Conf. Medical Image Computing and Computer-Assisted Intervention, 2001, pp. 258-265.
18. J. West et al., "Comparison and evaluation of retrospective intermodality brain image registration techniques," J. Comput. Assist. Tomogr., 1996.
19. Numerical Recipes in C, The Art of Scientific Computing. Cambridge, U.K.: Cambridge Univ. Press.