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Volumn 37, Issue 3, 2009, Pages 983-998

Tuning the relative affinities for activating and repressing operators of a temporally regulated restriction-modification system

Author keywords

[No Author keywords available]

Indexed keywords

METHYLTRANSFERASE; PROTEIN C; RESTRICTION ENDONUCLEASE; BACTERIAL DNA; BACTERIAL PROTEIN; CAGCTG SPECIFIC TYPE II DEOXYRIBONUCLEASES; CAGCTG-SPECIFIC TYPE II DEOXYRIBONUCLEASES; DNA MODIFICATION METHYLASE PVUII; REPRESSOR PROTEIN; SITE SPECIFIC DNA METHYLTRANSFERASE (CYTOSINE SPECIFIC); TRANSACTIVATOR PROTEIN; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

EID: 63349086121     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn1010     Document Type: Article
Times cited : (13)

References (73)
  • 1
    • 33846078626 scopus 로고    scopus 로고
    • REBASE-enzymes and genes for DNA restriction and modification
    • Roberts,R.J., Vincze,T., Posfai,J. and Macelis,D. (2007) REBASE-enzymes and genes for DNA restriction and modification. Nucleic Acids Res. 35, D269-D270.
    • (2007) Nucleic Acids Res , vol.35
    • Roberts, R.J.1    Vincze, T.2    Posfai, J.3    Macelis, D.4
  • 2
    • 17044403057 scopus 로고    scopus 로고
    • Type II restriction endonucleases: Structure and mechanism
    • Pingoud,A., Fuxreiter,M., Pingoud,V. and Wende,W. (2005) Type II restriction endonucleases: Structure and mechanism. Cell Mol. Life Sci., 62, 685-707.
    • (2005) Cell Mol. Life Sci , vol.62 , pp. 685-707
    • Pingoud, A.1    Fuxreiter, M.2    Pingoud, V.3    Wende, W.4
  • 3
    • 0030752992 scopus 로고    scopus 로고
    • The PvuII DNA (cytosine-N4)-methyltransferase comprises two trypsin-defined domains, each of which binds a molecule of S-adenosyl-L-methionine
    • Adams,G.M. and Blumenthal,R.M. (1997) The PvuII DNA (cytosine-N4)-methyltransferase comprises two trypsin-defined domains, each of which binds a molecule of S-adenosyl-L-methionine. Biochemistry, 36, 8284-8292.
    • (1997) Biochemistry , vol.36 , pp. 8284-8292
    • Adams, G.M.1    Blumenthal, R.M.2
  • 5
    • 0030612472 scopus 로고    scopus 로고
    • Structure of Pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment
    • Gong,W., O'Gara,M., Blumenthal,R.M. and Cheng,X. (1997) Structure of Pvu II DNA-(cytosine N4) methyltransferase, an example of domain permutation and protein fold assignment. Nucleic Acids Res., 25, 2702-2715.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2702-2715
    • Gong, W.1    O'Gara, M.2    Blumenthal, R.M.3    Cheng, X.4
  • 6
    • 0034663684 scopus 로고    scopus 로고
    • Recognition of native DNA methylation by the PvuII restriction endonuclease
    • Rice,M.R. and Blumenthal,R.M. (2000) Recognition of native DNA methylation by the PvuII restriction endonuclease. Nucleic Acids Res. 28, 3143-3150.
    • (2000) Nucleic Acids Res , vol.28 , pp. 3143-3150
    • Rice, M.R.1    Blumenthal, R.M.2
  • 7
    • 0033556694 scopus 로고    scopus 로고
    • Substrate recognition by the Pvu II endonuclease: Binding and cleavage of CAG5mCTG sites
    • Rice,M.R., Koons,M.D. and Blumenthal,R.M. (1999) Substrate recognition by the Pvu II endonuclease: Binding and cleavage of CAG5mCTG sites. Nucleic Acids Res., 27, 1032-1038.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1032-1038
    • Rice, M.R.1    Koons, M.D.2    Blumenthal, R.M.3
  • 8
    • 0023664751 scopus 로고
    • Interaction of AluI, Cfr6I and PvuII restriction-modification enzymes with substrates containing either N4-methylcytosine or 5-methylcytosine
    • Butkus,V., Klimasauskas,S., Petrauskiene,L., Maneliene,Z., Lebionka,A. and Janulaitis,A. (1987) Interaction of AluI, Cfr6I and PvuII restriction-modification enzymes with substrates containing either N4-methylcytosine or 5-methylcytosine. Biochim. Biophys. Acta, 909, 201-207.
    • (1987) Biochim. Biophys. Acta , vol.909 , pp. 201-207
    • Butkus, V.1    Klimasauskas, S.2    Petrauskiene, L.3    Maneliene, Z.4    Lebionka, A.5    Janulaitis, A.6
  • 9
    • 0022376069 scopus 로고
    • Cloning of a restriction-modification system from Proteus vulgaris and its use in analyzing a methylase-sensitive phenotype in Escherichia coli
    • Blumenthal,R.M., Gregory,S.A. and Cooperider,J.S. (1985) Cloning of a restriction-modification system from Proteus vulgaris and its use in analyzing a methylase-sensitive phenotype in Escherichia coli. J. Bacteriol., 164, 501-509.
    • (1985) J. Bacteriol , vol.164 , pp. 501-509
    • Blumenthal, R.M.1    Gregory, S.A.2    Cooperider, J.S.3
  • 10
    • 0029009733 scopus 로고
    • Characterization of pPvu1, the autonomous plasmid from Proteus vulgaris that carries the genes of the PvuII restriction-modification system
    • Calvin Koons,M.D. and Blumenthal,R.M. (1995) Characterization of pPvu1, the autonomous plasmid from Proteus vulgaris that carries the genes of the PvuII restriction-modification system. Gene, 157, 73-79.
    • (1995) Gene , vol.157 , pp. 73-79
    • Calvin Koons, M.D.1    Blumenthal, R.M.2
  • 11
    • 0026099080 scopus 로고
    • Transfer of the genes for the StyLTI restriction-modification system of Salmonella typhimurium to strains lacking modification ability results in death of the recipient cells and degradation of their DNA
    • De Backer,O. and Colson,C. (1991) Transfer of the genes for the StyLTI restriction-modification system of Salmonella typhimurium to strains lacking modification ability results in death of the recipient cells and degradation of their DNA. J. Bacteriol., 173, 1328-1330.
    • (1991) J. Bacteriol , vol.173 , pp. 1328-1330
    • De Backer, O.1    Colson, C.2
  • 12
    • 0010697814 scopus 로고
    • Repair of the Escherichia coli chromosome after in vivo scission by the EcoRI endonuclease
    • Heitman,J., Zinder,N.D. and Model,P. (1989) Repair of the Escherichia coli chromosome after in vivo scission by the EcoRI endonuclease. Proc. Natl Acad. Sci. USA, 86, 2281-2285.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 2281-2285
    • Heitman, J.1    Zinder, N.D.2    Model, P.3
  • 13
    • 22544464152 scopus 로고    scopus 로고
    • The biology of restriction and anti-restriction
    • Tock,M.R. and Dryden,D.T. (2005) The biology of restriction and anti-restriction. Curr. Opin. Microbiol., 8, 466-472.
    • (2005) Curr. Opin. Microbiol , vol.8 , pp. 466-472
    • Tock, M.R.1    Dryden, D.T.2
  • 14
    • 0030807132 scopus 로고    scopus 로고
    • Recombination and population structure in Escherichia coli
    • Milkman,R. (1997) Recombination and population structure in Escherichia coli. Genetics, 146, 745-750.
    • (1997) Genetics , vol.146 , pp. 745-750
    • Milkman, R.1
  • 15
    • 0242353167 scopus 로고    scopus 로고
    • Maintenance of species identity and controlling speciation of bacteria: A new function for restriction/modification systems?
    • Jeltsch,A. (2003) Maintenance of species identity and controlling speciation of bacteria: A new function for restriction/modification systems? Gene, 317, 13-16.
    • (2003) Gene , vol.317 , pp. 13-16
    • Jeltsch, A.1
  • 16
    • 0038414524 scopus 로고    scopus 로고
    • DNA restriction is a barrier to natural transformation in Pseudomonas stutzeri JM300
    • Berndt,C., Meier,P. and Wackernagel,W. (2003) DNA restriction is a barrier to natural transformation in Pseudomonas stutzeri JM300. Microbiology, 149, 895-901.
    • (2003) Microbiology , vol.149 , pp. 895-901
    • Berndt, C.1    Meier, P.2    Wackernagel, W.3
  • 17
    • 0033812744 scopus 로고    scopus 로고
    • Restriction-modification system differences in Helicobacter pylori are a barrier to interstrain plasmid transfer
    • Ando,T., Xu,Q., Torres,M., Kusugami,K., Israel,D.A. and Blaser,M.J. (2000) Restriction-modification system differences in Helicobacter pylori are a barrier to interstrain plasmid transfer. Mol. Microbiol. 37, 1052-1065.
    • (2000) Mol. Microbiol , vol.37 , pp. 1052-1065
    • Ando, T.1    Xu, Q.2    Torres, M.3    Kusugami, K.4    Israel, D.A.5    Blaser, M.J.6
  • 18
    • 0028878158 scopus 로고
    • Transduction, restriction and recombination patterns in Escherichia coli
    • McKane,M. and Milkman,R. (1995) Transduction, restriction and recombination patterns in Escherichia coli. Genetics, 139, 35-43.
    • (1995) Genetics , vol.139 , pp. 35-43
    • McKane, M.1    Milkman, R.2
  • 19
    • 57349123553 scopus 로고    scopus 로고
    • Genetic dissection of the Francisella novicida restriction barrier
    • Gallagher,L.A., McKevitt,M., Ramage,E.R. and Manoil,C. (2008) Genetic dissection of the Francisella novicida restriction barrier. J. Bacteriol., 190, 7830-7837.
    • (2008) J. Bacteriol , vol.190 , pp. 7830-7837
    • Gallagher, L.A.1    McKevitt, M.2    Ramage, E.R.3    Manoil, C.4
  • 20
    • 34548042075 scopus 로고    scopus 로고
    • Regulation of the EcoRI restriction-modification system: Identification of ecoRIM gene promoters and their upstream negative regulators in the ecoRIR gene
    • Liu,Y., Ichige,A. and Kobayashi,I. (2007) Regulation of the EcoRI restriction-modification system: Identification of ecoRIM gene promoters and their upstream negative regulators in the ecoRIR gene. Gene, 400, 140-149.
    • (2007) Gene , vol.400 , pp. 140-149
    • Liu, Y.1    Ichige, A.2    Kobayashi, I.3
  • 21
    • 34948863873 scopus 로고    scopus 로고
    • Negative regulation of EcoRI restriction enzyme gene associated with intragenic reverse promoters
    • Liu,Y. and Kobayashi,I. (2007) Negative regulation of EcoRI restriction enzyme gene associated with intragenic reverse promoters. J. Bacteriol., 189, 6928-6935.
    • (2007) J. Bacteriol , vol.189 , pp. 6928-6935
    • Liu, Y.1    Kobayashi, I.2
  • 22
    • 0026633116 scopus 로고
    • Sequence and characterization of pvuIIR, the PvuII endonuclease gene, and of pvuIIC, its regulatory gene
    • Tao,T. and Blumenthal,R.M. (1992) Sequence and characterization of pvuIIR, the PvuII endonuclease gene, and of pvuIIC, its regulatory gene. J. Bacteriol., 174, 3395-3398.
    • (1992) J. Bacteriol , vol.174 , pp. 3395-3398
    • Tao, T.1    Blumenthal, R.M.2
  • 23
    • 0029035552 scopus 로고
    • Purification and characterization of C.BamHI, a regulator of the BamHI restriction-modification system
    • Sohail,A., Ives,C.L. and Brooks,J.E. (1995) Purification and characterization of C.BamHI, a regulator of the BamHI restriction-modification system. Gene, 157, 227-228.
    • (1995) Gene , vol.157 , pp. 227-228
    • Sohail, A.1    Ives, C.L.2    Brooks, J.E.3
  • 24
    • 28844494799 scopus 로고    scopus 로고
    • Crystal structure of the restriction-modification system control element C.Bcll and mapping of its binding site
    • Sawaya,M.R., Zhu,Z., Mersha,F., Chan,S.H., Dabur,R., Xu,S.Y. and Balendiran,G.K. (2005) Crystal structure of the restriction-modification system control element C.Bcll and mapping of its binding site. Structure, 13, 1837-1847.
    • (2005) Structure , vol.13 , pp. 1837-1847
    • Sawaya, M.R.1    Zhu, Z.2    Mersha, F.3    Chan, S.H.4    Dabur, R.5    Xu, S.Y.6    Balendiran, G.K.7
  • 25
    • 11844250013 scopus 로고    scopus 로고
    • Nature of the promoter activated by C.PvuII, an unusual regulatory protein conserved among restriction-modification systems
    • Knowle,D., Lintner,R.E., Touma,Y.M. and Blumenthal,R.M. (2005) Nature of the promoter activated by C.PvuII, an unusual regulatory protein conserved among restriction-modification systems. J. Bacteriol., 187, 488-497.
    • (2005) J. Bacteriol , vol.187 , pp. 488-497
    • Knowle, D.1    Lintner, R.E.2    Touma, Y.M.3    Blumenthal, R.M.4
  • 26
    • 0028865833 scopus 로고
    • The regulatory C proteins from different restriction-modification systems can cross-complement
    • Ives,C.L., Sohail,A. and Brooks,J.E. (1995) The regulatory C proteins from different restriction-modification systems can cross-complement. J. Bacteriol., 177, 6313-6315.
    • (1995) J. Bacteriol , vol.177 , pp. 6313-6315
    • Ives, C.L.1    Sohail, A.2    Brooks, J.E.3
  • 27
    • 0032568598 scopus 로고    scopus 로고
    • Restriction-modification gene complexes as selfish gene entities: Roles of a regulatory system in their establishment, maintenance, and apoptotic mutual exclusion
    • Nakayama,Y. and Kobayashi,I. (1998) Restriction-modification gene complexes as selfish gene entities: Roles of a regulatory system in their establishment, maintenance, and apoptotic mutual exclusion. Proc. Natl Acad. Sci. USA, 95, 6442-6447.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 6442-6447
    • Nakayama, Y.1    Kobayashi, I.2
  • 28
    • 36749088056 scopus 로고    scopus 로고
    • Regulatory circuit based on autogenous activation-repression: Roles of C-boxes and spacer sequences in control of the PvuII restriction-modification system
    • Mruk,I., Rajesh,P. and Blumenthal,R.M. (2007) Regulatory circuit based on autogenous activation-repression: Roles of C-boxes and spacer sequences in control of the PvuII restriction-modification system. Nucleic Acids Res., 35, 6935-6952.
    • (2007) Nucleic Acids Res , vol.35 , pp. 6935-6952
    • Mruk, I.1    Rajesh, P.2    Blumenthal, R.M.3
  • 29
    • 33646105382 scopus 로고    scopus 로고
    • Cooperative binding of the C.AhdI controller protein to the C/R promoter and its role in endonuclease gene expression
    • McGeehan,J.E., Papapanagiotou,I., Streeter,S.D. and Kneale,G.G. (2006) Cooperative binding of the C.AhdI controller protein to the C/R promoter and its role in endonuclease gene expression. J. Mol. Biol., 358, 523-531.
    • (2006) J. Mol. Biol , vol.358 , pp. 523-531
    • McGeehan, J.E.1    Papapanagiotou, I.2    Streeter, S.D.3    Kneale, G.G.4
  • 30
    • 43349095997 scopus 로고    scopus 로고
    • Real-time kinetics of restriction-modification gene expression after entry into a new host cell
    • Mruk,I. and Blumenthal,R.M. (2008) Real-time kinetics of restriction-modification gene expression after entry into a new host cell. Nucleic Acids Res., 36, 2581-2593.
    • (2008) Nucleic Acids Res , vol.36 , pp. 2581-2593
    • Mruk, I.1    Blumenthal, R.M.2
  • 31
    • 0031782375 scopus 로고    scopus 로고
    • Control of expression of LlaI restriction in Lactococcus lactis
    • O'Sullivan,D.J. and Klaenhammer,T.R. (1998) Control of expression of LlaI restriction in Lactococcus lactis. Mol. Microbiol., 27, 1009-1020.
    • (1998) Mol. Microbiol , vol.27 , pp. 1009-1020
    • O'Sullivan, D.J.1    Klaenhammer, T.R.2
  • 32
    • 0037437368 scopus 로고    scopus 로고
    • Esp1396I restriction-modification system: Structural organization and mode of regulation
    • Cesnaviciene,E., Mitkaite,G., Stankevicius,K., Janulaitis,A. and Lubys,A. (2003) Esp1396I restriction-modification system: Structural organization and mode of regulation. Nucleic Acids Res., 31, 743-749.
    • (2003) Nucleic Acids Res , vol.31 , pp. 743-749
    • Cesnaviciene, E.1    Mitkaite, G.2    Stankevicius, K.3    Janulaitis, A.4    Lubys, A.5
  • 33
    • 0033988985 scopus 로고    scopus 로고
    • Role and mechanism of action of C. PvuII, a regulatory protein conserved among restriction-modification systems
    • Vijesurier,R.M., Carlock,L., Blumenthal,R.M. and Dunbar,J.C. (2000) Role and mechanism of action of C. PvuII, a regulatory protein conserved among restriction-modification systems. J. Bacteriol., 182, 477-487.
    • (2000) J. Bacteriol , vol.182 , pp. 477-487
    • Vijesurier, R.M.1    Carlock, L.2    Blumenthal, R.M.3    Dunbar, J.C.4
  • 34
    • 0026087311 scopus 로고
    • A family of regulatory genes associated with type II restriction-modification systems
    • Tao,T., Bourne,J.C. and Blumenthal,R.M. (1991) A family of regulatory genes associated with type II restriction-modification systems. J. Bacteriol., 173, 1367-1375.
    • (1991) J. Bacteriol , vol.173 , pp. 1367-1375
    • Tao, T.1    Bourne, J.C.2    Blumenthal, R.M.3
  • 35
    • 0033057789 scopus 로고    scopus 로고
    • Operator sequences for the regulatory proteins of restriction modification systems
    • Bart,A., Dankert,J. and van der Ende,A. (1999) Operator sequences for the regulatory proteins of restriction modification systems. Mol. Microbiol., 31, 1277-1278.
    • (1999) Mol. Microbiol , vol.31 , pp. 1277-1278
    • Bart, A.1    Dankert, J.2    van der Ende, A.3
  • 36
    • 0029030933 scopus 로고
    • The eco72IC gene specifies a trans-acting factor which influences expression of both DNA methyltransferase and endonuclease from the Eco72I restriction-modification system
    • Rimseliene,R., Vaisvila,R. and Janulaitis,A. (1995) The eco72IC gene specifies a trans-acting factor which influences expression of both DNA methyltransferase and endonuclease from the Eco72I restriction-modification system. Gene, 157, 217-219.
    • (1995) Gene , vol.157 , pp. 217-219
    • Rimseliene, R.1    Vaisvila, R.2    Janulaitis, A.3
  • 38
    • 0037101805 scopus 로고    scopus 로고
    • C.EcoO109I, a regulatory protein for production of EcoO109I restriction endonuclease, specifically binds to and bends DNA upstream of its translational start site
    • Kita,K., Tsuda,J. and Nakai,S.Y. (2002) C.EcoO109I, a regulatory protein for production of EcoO109I restriction endonuclease, specifically binds to and bends DNA upstream of its translational start site. Nucleic Acids Res., 30, 3558-3565.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3558-3565
    • Kita, K.1    Tsuda, J.2    Nakai, S.Y.3
  • 39
    • 15944379232 scopus 로고    scopus 로고
    • The many faces of the helix-turn-helix domain: Transcription regulation and beyond
    • Aravind,L., Anantharaman,V., Balaji,S., Babu,M.M. and Iyer,L.M. (2005) The many faces of the helix-turn-helix domain: Transcription regulation and beyond. FEMS Microbiol. Rev., 29, 231-262.
    • (2005) FEMS Microbiol. Rev , vol.29 , pp. 231-262
    • Aravind, L.1    Anantharaman, V.2    Balaji, S.3    Babu, M.M.4    Iyer, L.M.5
  • 40
    • 34250312038 scopus 로고    scopus 로고
    • DNA structural deformations in the interaction of the controller protein C.AhdI with its operator sequence
    • Papapanagiotou,I., Streeter,S.D., Cary,P.D. and Kneale,G.G. (2007) DNA structural deformations in the interaction of the controller protein C.AhdI with its operator sequence. Nucleic Acids Res., 35, 2643-2650.
    • (2007) Nucleic Acids Res , vol.35 , pp. 2643-2650
    • Papapanagiotou, I.1    Streeter, S.D.2    Cary, P.D.3    Kneale, G.G.4
  • 41
    • 49249132732 scopus 로고    scopus 로고
    • Structural analysis of the genetic switch that regulates the expression of restriction-modification genes
    • McGeehan,J.E., Streeter,S.D., Thresh,S.-J., Ball,N., Ravelli,R.B.G. and Kneale,G.G. (2008) Structural analysis of the genetic switch that regulates the expression of restriction-modification genes. Nucleic Acid Res., 36, 4778-4787.
    • (2008) Nucleic Acid Res , vol.36 , pp. 4778-4787
    • McGeehan, J.E.1    Streeter, S.D.2    Thresh, S.-J.3    Ball, N.4    Ravelli, R.B.G.5    Kneale, G.G.6
  • 43
    • 0026602370 scopus 로고
    • Organization and function of the mcrBC genes of Escherichia coli K-12
    • Raleigh,E.A. (1992) Organization and function of the mcrBC genes of Escherichia coli K-12. Mol. Microbiol., 6, 1079-1086.
    • (1992) Mol. Microbiol , vol.6 , pp. 1079-1086
    • Raleigh, E.A.1
  • 45
    • 0018956590 scopus 로고
    • Analysis of gene control signals by DNA fusion and cloning in Escherichia coli
    • Casadaban,M.J. and Cohen,S.N. (1980) Analysis of gene control signals by DNA fusion and cloning in Escherichia coli. J. Mol. Biol., 138 179-207.
    • (1980) J. Mol. Biol , vol.138 , pp. 179-207
    • Casadaban, M.J.1    Cohen, S.N.2
  • 46
    • 0029018327 scopus 로고
    • Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter
    • Guzman,L.M., Belin,D., Carson,M.J. and Beckwith,J. (1995) Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J. Bacteriol., 177, 4121-4130.
    • (1995) J. Bacteriol , vol.177 , pp. 4121-4130
    • Guzman, L.M.1    Belin, D.2    Carson, M.J.3    Beckwith, J.4
  • 49
    • 0025288248 scopus 로고
    • The ilvIH operon of Escherichia coli is positively regulated
    • Platko,J.V., Willins,D.A. and Calvo,J.M. (1990) The ilvIH operon of Escherichia coli is positively regulated. J. Bacteriol., 172 4563-4570.
    • (1990) J. Bacteriol , vol.172 , pp. 4563-4570
    • Platko, J.V.1    Willins, D.A.2    Calvo, J.M.3
  • 51
    • 0024814234 scopus 로고
    • Bending of DNA by gene-regulatory proteins: Construction and use of a DNA bending vector
    • Kim,J., Zwieb,C., Wu,C. and Adhya,S. (1989) Bending of DNA by gene-regulatory proteins: Construction and use of a DNA bending vector. Gene, 85, 15-23.
    • (1989) Gene , vol.85 , pp. 15-23
    • Kim, J.1    Zwieb, C.2    Wu, C.3    Adhya, S.4
  • 54
    • 0027950247 scopus 로고
    • A versatile plasmid vector system for the regulated expression of genes in Escherichia coli
    • Diederich,L., Roth,A. and Messer,W. (1994) A versatile plasmid vector system for the regulated expression of genes in Escherichia coli. Biotechniques, 16, 916-923.
    • (1994) Biotechniques , vol.16 , pp. 916-923
    • Diederich, L.1    Roth, A.2    Messer, W.3
  • 56
    • 0023771741 scopus 로고
    • Empirical estimation of protein-induced DNA bending angles: Applications to lambda site-specific recombination complexes
    • Thompson,J.F. and Landy,A. (1988) Empirical estimation of protein-induced DNA bending angles: Applications to lambda site-specific recombination complexes. Nucleic Acids Res., 16, 9687-9705.
    • (1988) Nucleic Acids Res , vol.16 , pp. 9687-9705
    • Thompson, J.F.1    Landy, A.2
  • 57
    • 13744261995 scopus 로고    scopus 로고
    • A precise DNA bend angle is essential for the function of the phage phi29 transcriptional regulator
    • Perez-Lago,L., Salas,M. and Camacho,A. (2005) A precise DNA bend angle is essential for the function of the phage phi29 transcriptional regulator. Nucleic Acids Res., 33, 126-134.
    • (2005) Nucleic Acids Res , vol.33 , pp. 126-134
    • Perez-Lago, L.1    Salas, M.2    Camacho, A.3
  • 58
    • 0020654318 scopus 로고
    • The origin of replication of plasmid p15A and comparative studies on the nucleotide sequences around the origin of related plasmids
    • Selzer,G., Som,T., Itoh,T. and Tomizawa,J. (1983) The origin of replication of plasmid p15A and comparative studies on the nucleotide sequences around the origin of related plasmids. Cell, 32, 119-129.
    • (1983) Cell , vol.32 , pp. 119-129
    • Selzer, G.1    Som, T.2    Itoh, T.3    Tomizawa, J.4
  • 59
    • 0034461764 scopus 로고    scopus 로고
    • Regulatable arabinose-inducible gene expression system with consistent control in all cells of a culture
    • Khlebnikov,A., Risa,O., Skaug,T., Carrier,T.A. and Keasling,J.D. (2000) Regulatable arabinose-inducible gene expression system with consistent control in all cells of a culture. J. Bacteriol., 182, 7029-7034.
    • (2000) J. Bacteriol , vol.182 , pp. 7029-7034
    • Khlebnikov, A.1    Risa, O.2    Skaug, T.3    Carrier, T.A.4    Keasling, J.D.5
  • 60
    • 0342687610 scopus 로고
    • A perfectly symmetric lac operator binds the lac repressor very tightly
    • Sadler,J.R., Sasmor,H. and Betz,J.L. (1983) A perfectly symmetric lac operator binds the lac repressor very tightly. Proc. Natl Acad. Sci. USA, 80, 6785-6789.
    • (1983) Proc. Natl Acad. Sci. USA , vol.80 , pp. 6785-6789
    • Sadler, J.R.1    Sasmor, H.2    Betz, J.L.3
  • 61
    • 0023645192 scopus 로고
    • Kinetic studies on Cro repressor-operator DNA interaction
    • Kim,J.G., Takeda,Y., Matthews,B.W. and Anderson,W.F. (1987) Kinetic studies on Cro repressor-operator DNA interaction. J. Mol. Biol., 196, 149-158.
    • (1987) J. Mol. Biol , vol.196 , pp. 149-158
    • Kim, J.G.1    Takeda, Y.2    Matthews, B.W.3    Anderson, W.F.4
  • 63
    • 33846235054 scopus 로고    scopus 로고
    • Naturally occurring adenines within mRNA coding sequences affect ribosome binding and expression in Escherichia coli
    • Brock,J.E., Paz,R.L., Cottle,P. and Janssen,G.R. (2007) Naturally occurring adenines within mRNA coding sequences affect ribosome binding and expression in Escherichia coli. J. Bacteriol., 189, 501-510.
    • (2007) J. Bacteriol , vol.189 , pp. 501-510
    • Brock, J.E.1    Paz, R.L.2    Cottle, P.3    Janssen, G.R.4
  • 64
    • 0028890298 scopus 로고
    • How 434 repressor discriminates between OR1 and OR3. The influence of contacted and noncontacted base pairs
    • Bell,A.C. and Koudelka,G.B. (1995) How 434 repressor discriminates between OR1 and OR3. The influence of contacted and noncontacted base pairs. J. Biol. Chem., 270, 1205-1212.
    • (1995) J. Biol. Chem , vol.270 , pp. 1205-1212
    • Bell, A.C.1    Koudelka, G.B.2
  • 65
    • 0024284650 scopus 로고
    • Recognition of a DNA operator by the repressor of phage 434: A view at high resolution
    • Aggarwal,A.K., Rodgers,D.W., Drottar,M., Ptashne,M. and Harrison,S.C. (1988) Recognition of a DNA operator by the repressor of phage 434: A view at high resolution. Science, 242, 899-907.
    • (1988) Science , vol.242 , pp. 899-907
    • Aggarwal, A.K.1    Rodgers, D.W.2    Drottar, M.3    Ptashne, M.4    Harrison, S.C.5
  • 66
    • 0032518220 scopus 로고    scopus 로고
    • Recognition of DNA structure by 434 repressor
    • Koudelka,G.B. (1998) Recognition of DNA structure by 434 repressor. Nucleic Acids Res., 26, 669-675.
    • (1998) Nucleic Acids Res , vol.26 , pp. 669-675
    • Koudelka, G.B.1
  • 67
    • 39749145842 scopus 로고    scopus 로고
    • P22 c2 repressor-operator complex: Mechanisms of direct and indirect readout
    • Watkins,D., Hsiao,C., Woods,K.K., Koudelka,G.B. and Williams,L.D. (2008) P22 c2 repressor-operator complex: Mechanisms of direct and indirect readout. Biochemistry, 47, 2325-2338.
    • (2008) Biochemistry , vol.47 , pp. 2325-2338
    • Watkins, D.1    Hsiao, C.2    Woods, K.K.3    Koudelka, G.B.4    Williams, L.D.5
  • 68
    • 0037968651 scopus 로고    scopus 로고
    • The role of the minor groove substituents in indirect readout of DNA sequence by 434 repressor
    • Mauro,S.A., Pawlowski,D. and Koudelka,G.B. (2003) The role of the minor groove substituents in indirect readout of DNA sequence by 434 repressor. J. Biol. Chem., 278, 12955-12960.
    • (2003) J. Biol. Chem , vol.278 , pp. 12955-12960
    • Mauro, S.A.1    Pawlowski, D.2    Koudelka, G.B.3
  • 69
  • 70
    • 33750621840 scopus 로고    scopus 로고
    • Indirect readout of DNA sequence by proteins: The roles of DNA sequence-dependent intrinsic and extrinsic forces
    • Koudelka,G.B., Mauro,S.A. and Ciubotaru,M. (2006) Indirect readout of DNA sequence by proteins: The roles of DNA sequence-dependent intrinsic and extrinsic forces. Prog. Nucleic Acid Res. Mol. Biol., 81 143-177.
    • (2006) Prog. Nucleic Acid Res. Mol. Biol , vol.81 , pp. 143-177
    • Koudelka, G.B.1    Mauro, S.A.2    Ciubotaru, M.3
  • 71
    • 33751003527 scopus 로고    scopus 로고
    • Indirect readout: Detection of optimized subsequences and calculation of relative binding affinities using different DNA elastic potentials
    • Becker,N.B., Wolff,L. and Everaers,R. (2006) Indirect readout: Detection of optimized subsequences and calculation of relative binding affinities using different DNA elastic potentials. Nucleic Acids Res., 34 5638-5649.
    • (2006) Nucleic Acids Res , vol.34 , pp. 5638-5649
    • Becker, N.B.1    Wolff, L.2    Everaers, R.3
  • 72
    • 0032584223 scopus 로고    scopus 로고
    • How Cro and lambda-repressor distinguish between operators: The structural basis underlying a genetic switch
    • Albright,R.A. and Matthews,B.W. (1998) How Cro and lambda-repressor distinguish between operators: The structural basis underlying a genetic switch. Proc. Natl Acad. Sci. USA, 95, 3431-3436.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 3431-3436
    • Albright, R.A.1    Matthews, B.W.2
  • 73
    • 59649126997 scopus 로고    scopus 로고
    • Systematic prediction of control proteins and their DNA binding sites
    • doi:101093/nar/gkn931
    • Sorokin,V., Severinov,K. and Gelfand,M.S. (2008) Systematic prediction of control proteins and their DNA binding sites. Nucleic Acids Res. doi:101093/nar/gkn931.
    • (2008) Nucleic Acids Res
    • Sorokin, V.1    Severinov, K.2    Gelfand, M.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.