Linguistic processing and classification of semi structured bibliographic data on complementary medicine

Cancer Informatics

Volumn 7, Issue , 2009, Pages 159-169

  Ostermann, Thomas ^a   Raak, Christa K ^a   Matthiessen, Peter F ^a   Büssing, Arndt ^a   Zillmann, Hartmut ^b  

^a UNIVERSITY OF WITTEN HERDECKE   (Germany)

^b Intelligent Data Management IDM   (Germany)

Author keywords

Cancer; Complementary medicine; Database; Literature; Semantic web

Indexed keywords

ALGORITHM; ALTERNATIVE MEDICINE; CANCER THERAPY; LINGUISTICS; MEDLINE; NATURAL LANGUAGE PROCESSING; REVIEW; SEMANTICS; VISCUM ALBUM;

EID: 63249124145     PISSN: 11769351     EISSN: 11769351     Source Type: Journal    
DOI: 10.4137/cin.s1182     Document Type: Review

References (41)

1. Zollman C, Vickers A. ABC of complementary medicine. What is complementary medicine? British Medical Journal. 1999;319:693-6.
2. Varga O, Márton S, Molnár P. Status of Complementary and Alternative Medicine in European Medical Schools. Forsch Komplementä rmed. 2006; 13:41-5.
3. Ernst E. The role of complementary and alternative medicine. British Medical Journal. 2000;321:1133-5.
4. Fox S, Rainie L. Vital decisions: how Internet users decide what information to trust when they or their loved ones are sick. Washington, DC: The Pew Internet and American Life project. 2002.
5. Molatossiotis A, Fernandez-Ortega P, Pud D, Ozden G, Scott JA, Panteli V. Use of CAM in cancer patients: A European survey. Ann Oncol. 2005; 16:655-663.
6. Leydon GM, Boulton M, Moynihan C, et al. Cancer patients' information needs and information seeking behaviour: in depth interview study. British Medical Journal. 2000;320(7239):909-13.
7. Büssing A, Ostermann T, Matthiessen PF. Search for meaningful support and the meaning of illness in German cancer patients. Anticancer Res. 2005;25(2B):1449-55.
8. Ziebland S, Chapple A, Dumelow C, Evans J, Prinjha S, Rozmovits L. How the internet affects patients' experience of cancer: a qualitative study. British Medical Journal. 2004;328:564-70.
9. Pal SK, Pandey GS, Kesari A, Choudhuri G, Mittal B. Fighting cancer in the information age: the role of Internet. Indian J Exp Biol. 2003;41(3):189-200.
10. Ostermann T, Zillmann H, Matthiessen PF. Literatur zur Komplementärmedizin bei Krebs - Recherchemöglichkeit im Internet mit der CAMbase-Datenbank. Dt Zs Onkol. 2004;36:165-9.
11. Schmidt and Ernst E. Assessing websites on complementary and alternative medicine for cancer. Ann Oncot. 2004;15(5):733-42.
12. Murphy LS, Reinsch S, Najm WI, et al. Searching biomedical databases on complementary medicine: the use of controlled vocabulary among authors, indexers and investigators. BMC Complementary and Alternative Medicine. 2003;3:3.
13. Shahar T, Yitzhaki M. Entwurf eines kontrollierten Thesaurus für das schnell wachsende Fach alternative Medizin. Proceedings of the 66th IFLA Council and General Conference, Jerusalem. 2000.
14. Furnas GW. Statistical semantics: How can a computer use what people name things to guess what things people mean when they name things. Proceedings of the Human Factors in Computer Systems Conference. 1982;251-3.
15. Ostermann T, Zillmann H, Matthiessen PF. The CAMbase literature database-an XML-based approach towards published evidence in CM. Focus Altern Complement Ther. 2004;9:37.
16. Dickersin K, Scherer R, Lefebvre C. Systematic Reviews: Identifying relevant studies for systematic reviews. British Medical Journal. 1994; 309:1286-91.
17. Flanagan A, Guy P, Larsson S, Saussois C. European Physicians and the Internet. The Boston Consultig Group Report. 2003.
18. Brants T. Natural Language Processing in Information Retrieval. Proceedings of the 14th Meeting of Computational Linguistics in the Netherlands. Antwerp, Belgium. 2004;1-13.
19. Zillmann H. Information Retrieval and Search Engines in Full-Text-Databases. Liber Quarterely. 2000;10:335-41.
20. Loth K. Thematische Abfrage einer dreisprachigen Datenbank mit computerlinguistischen Komponenten. ABI Technik. 2004;24 (4):294-300.
21. Siegmüller R. Verfahren der automatischen Indexierung in bibliotheksbezogenen Anwendungen. Berliner Handreichungen zur Bibliotheksund Informationswissenschaft 214, Berlin. 2007.
22. Harman D, Fox E, Baeta-Yates R, Lee W. Inverted Files. In: W.B Frakes, R. Baeza-Yates, eds, Information Retrieval: Data Structures and Algorithms, Prentice Hall. 1992;28-44.
23. Smith DA, Mahoney A, Rydberg-Cox JA. Management of XML documents in an integrated digital library. Markup Languages: Theory and Practice. 2000;2(3):205-14.
24. Ostermann T, Zillmann H, Matthiessen PF. The CAMbase-Literature-Database - A XML-based Approach towards Published Evidence in Complementary Medicine. In: Lasker GE, Kratky KW. eds, Health, Healing and Medicine. Volume XI. Comparative and Integrative Medicine. The International Institute for Advanced Studies in Systems Research and Cybernetics, Windsor, Ontario. 2005;29-34.
25. Ostermann T, Zillmann H, Matthiessen PF. Die CAMbase-Literaturdatenbank - ealisierung eines komplementärmedizinischen Datenbankverbundes. Zeitschrift für ärztliche Fortbildung und Qualitä tssicherung. 2004;98:501-8.
26. Decker S, van Harmelen F, Broekstra J, Erdmann M, Fensel D, Horrocks I. The semantic web - on the respective roles of XML and RDF. IEEE Internet Computing. 2000.
27. Post LJ, Roos M, Marshall MS, van Driel R, Breit TM. A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data. Bioinformatics. 2007;23(22):3080-7.
28. Doms A, Schroeder M. GoPubMed: exploring PubMed with the Gene Ontology. Nucleic Acids Res. 2005;33(Web Server issue):W783-6.
29. Baker C, Kanagasabai R, Ang W, Veeramani A, Low H, Wenk M. Towards ontology-driven navigation of the lipid bibliosphere. BMC bioinformatics. 2008. 9 Suppl 1, S5.
30. Chen D, Müller HM, Sternberg PW. Automatic document classification of biological literature. BMC Bioinformatics. 2006;7:370.
31. Müller HM, Rangarajan A, Teal TK, Sternberg PW. 2008. Textpresso for neuroscience: searching the full text of thousands of neuroscience research papers. Neuroinformatics. 2005;6(3):195-204.
32. Ostermann T, Zillmann H, Raak CK, Büssing A, Matthiessen PF. CAMbase - A XML-based bibliographical database on Complementary and Alternative Medicine (CAM). Biomedical Digital Libraries. 2007;4:2.
33. Kim HL, Passant A, Breslin JG, Scerri S, Decker S. Review and Alignment of Tag Ontologies for Semantically-Linked Data in Collaborative Tagging Spaces. The 2nd IEEE International Conference on Semantic Computing, Santa Clara, USA. 2008.
34. Hassell J, Aleman-Meza B, Arpinar IB. Ontology-driven automatic entity disambiguation in unstructured text. Proceedings of the 5th International Semantic Web Conference, Athens, GA. 2006.
35. Buckingham S. Data's future shock. Nature. 2004;428:774-7.
36. Vatant B. 2004. Ontology-Driven Topic Maps. Proc. XML Europe (2004), http:// www. idealliance.org/europe/04/call/xmlpapers/03-03-03.91/.03-03-03. html.
37. Mertz M. Complementary and alternative medicine: the challenges of ethical justification. A philosophical analysis and evaluation of ethical reasons for the offer, use and promotion of complementary and alternative medicine. Med Health Care Philos. 2007;10(3):329-45.
38. Logan HM. Electronic lexicography. Computers and the Humanities. 1991;25(6):351-61.
39. Santana O, Carreras F, Hernández Z, González A. Integration of an XML electronic dictionary with linguistic tools for natural language processing. Information Processing and Management. 2007;43(4):946-57.
40. Whitmarsh T. The complexities of homeopathic prescribing or how do we decide to do what we do? Homeopathy. 2007;96(2):71.
41. Bug WJ, Ascoli GA, Grethe JS, Gupta A, Fennema-Notestine C, Laird AR. The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience. Neuroinformatics. 2008;6(3):175-94.