메뉴 건너뛰기




Volumn 37, Issue 5, 2009, Pages 1628-1637

Influence of flanking sequence context on the conformational flexibility of aminofluorene-modified dG adduct in dA mismatch DNA duplexes

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; AROMATIC AMINE; CYTOSINE; DNA; FLUORENE DERIVATIVE; GUANINE; N (2' DEOXYGUANOSIN YL) 7 FLUORO 2 AMINOFLUORENE; SODIUM CHLORIDE; THYMINE; UNCLASSIFIED DRUG;

EID: 63249108233     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn1063     Document Type: Article
Times cited : (26)

References (37)
  • 1
    • 0037604848 scopus 로고    scopus 로고
    • Aromatic amines and human urinary bladder cancer: Exposure sources and epidemiology
    • Talaska,G. (2003) Aromatic amines and human urinary bladder cancer: exposure sources and epidemiology. J. Environ. Sci. Health C Environ. Carcinog. Ecotoxicol. Rev., 21, 29-43.
    • (2003) J. Environ. Sci. Health C Environ. Carcinog. Ecotoxicol. Rev , vol.21 , pp. 29-43
    • Talaska, G.1
  • 2
    • 3543129379 scopus 로고    scopus 로고
    • Chemical-induced DNA damage and human cancer risk
    • Poirier,M.C. (2004) Chemical-induced DNA damage and human cancer risk. Nature Rev. Cancer, 4, 630-637.
    • (2004) Nature Rev. Cancer , vol.4 , pp. 630-637
    • Poirier, M.C.1
  • 3
    • 0036797382 scopus 로고    scopus 로고
    • 4-Aminobiphenyl is a major etiological agent of human bladder cancer: Evidence from its DNA binding spectrum in human p53 gene
    • Feng,Z., Hu,W., Rom,W.N., Beland,F.A. and Tang,M.S. (2002) 4-Aminobiphenyl is a major etiological agent of human bladder cancer: evidence from its DNA binding spectrum in human p53 gene. Carcinogenesis, 23, 1721-1727.
    • (2002) Carcinogenesis , vol.23 , pp. 1721-1727
    • Feng, Z.1    Hu, W.2    Rom, W.N.3    Beland, F.A.4    Tang, M.S.5
  • 4
    • 33644634327 scopus 로고    scopus 로고
    • Interactions of carcinogen-bound DNA with individual DNA polymerases
    • Guengerich,F.P. (2006) Interactions of carcinogen-bound DNA with individual DNA polymerases. Chem. Rev., 106, 420-452.
    • (2006) Chem. Rev , vol.106 , pp. 420-452
    • Guengerich, F.P.1
  • 5
    • 0027935994 scopus 로고
    • Genetic toxicity of 2-acetylaminofluorene, 2-aminofluorene and some of their metabolites and model metabolites
    • Heflich,R.H. and Neft,R.E. (1994) Genetic toxicity of 2-acetylaminofluorene, 2-aminofluorene and some of their metabolites and model metabolites. Mutat. Res., 318, 73-114.
    • (1994) Mutat. Res , vol.318 , pp. 73-114
    • Heflich, R.H.1    Neft, R.E.2
  • 6
  • 7
    • 0035957238 scopus 로고    scopus 로고
    • Influence of flanking sequence context on the mutagenicity of acetylaminofluorene-derived DNA adducts in mammalian cells
    • Shibutani,S., Suzuki,N., Tan,X., Johnson,F. and Grollman,A.P. (2001) Influence of flanking sequence context on the mutagenicity of acetylaminofluorene-derived DNA adducts in mammalian cells. Biochemistry, 27, 3717-3722.
    • (2001) Biochemistry , vol.27 , pp. 3717-3722
    • Shibutani, S.1    Suzuki, N.2    Tan, X.3    Johnson, F.4    Grollman, A.P.5
  • 8
    • 0033804390 scopus 로고    scopus 로고
    • Factors that influence the mutagenic patterns of DNA adducts from chemical carcinogens
    • Seo,K.Y., Jelinsky,S.A. and Loechler,E.L. (2000) Factors that influence the mutagenic patterns of DNA adducts from chemical carcinogens. Mutat. Res., 463, 215-246.
    • (2000) Mutat. Res , vol.463 , pp. 215-246
    • Seo, K.Y.1    Jelinsky, S.A.2    Loechler, E.L.3
  • 9
    • 0031800438 scopus 로고    scopus 로고
    • Nuclear magnetic resonance solution structures of covalent aromatic amine-DNA adducts and their mutagenic relevance
    • Patel,D.J., Mao,B., Gu,Z., Hingerty,B.E., Gorin,A., Basu,A.K. and Broyde,S. (1998) Nuclear magnetic resonance solution structures of covalent aromatic amine-DNA adducts and their mutagenic relevance. Chem. Res. Toxicol., 11, 391-407.
    • (1998) Chem. Res. Toxicol , vol.11 , pp. 391-407
    • Patel, D.J.1    Mao, B.2    Gu, Z.3    Hingerty, B.E.4    Gorin, A.5    Basu, A.K.6    Broyde, S.7
  • 10
    • 9644265249 scopus 로고    scopus 로고
    • Dynamic conformational heterogeneities of carcinogen-DNA adducts and their mutagenic relevance
    • Cho,B.P. (2004) Dynamic conformational heterogeneities of carcinogen-DNA adducts and their mutagenic relevance. J. Environ. Sci. Health. Part C-Environ. Carcinogen. Ecotoxicol. Rev., 22, 57-90.
    • (2004) J. Environ. Sci. Health. Part C-Environ. Carcinogen. Ecotoxicol. Rev , vol.22 , pp. 57-90
    • Cho, B.P.1
  • 11
    • 32644440758 scopus 로고    scopus 로고
    • Sequence effects of aminofluorene-modified DNA duplexes: Thermodynamic and circular dichroism properties
    • Meneni,S.R., D'Mello,R., Norigian,G., Baker,G., Gao,L., Chiarelli,M.P. and Cho,B.P. (2006) Sequence effects of aminofluorene-modified DNA duplexes: Thermodynamic and circular dichroism properties. Nucleic Acids Res., 34, 755-763.
    • (2006) Nucleic Acids Res , vol.34 , pp. 755-763
    • Meneni, S.R.1    D'Mello, R.2    Norigian, G.3    Baker, G.4    Gao, L.5    Chiarelli, M.P.6    Cho, B.P.7
  • 12
    • 33846858612 scopus 로고    scopus 로고
    • Conformation-specific recognition of carcinogen-DNA adduct in E. coli. nucleotide excision repair
    • Meneni,S., Shell,S.M., Zou,Y. and Cho,B.P. (2007) Conformation-specific recognition of carcinogen-DNA adduct in E. coli. nucleotide excision repair. Chem. Res. Toxicol., 20, 6-10.
    • (2007) Chem. Res. Toxicol , vol.20 , pp. 6-10
    • Meneni, S.1    Shell, S.M.2    Zou, Y.3    Cho, B.P.4
  • 13
    • 35048822835 scopus 로고    scopus 로고
    • Spectroscopic and theoretical insights into sequence effects of aminofluorene-induced conformational heterogeneity and nucleotide excision repair
    • Meneni,S.R., Shell,S.M., Gao,L., Jurecka,P., Lee,W., Sponer,J., Zou,Y., Chiarelli,M.P. and Cho,B.P. (2007) Spectroscopic and theoretical insights into sequence effects of aminofluorene-induced conformational heterogeneity and nucleotide excision repair. Biochemistry, 46 11263-11278.
    • (2007) Biochemistry , vol.46 , pp. 11263-11278
    • Meneni, S.R.1    Shell, S.M.2    Gao, L.3    Jurecka, P.4    Lee, W.5    Sponer, J.6    Zou, Y.7    Chiarelli, M.P.8    Cho, B.P.9
  • 15
    • 0029817865 scopus 로고    scopus 로고
    • Solution conformation of the N-(deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) adduct opposite dC in a DNA duplex
    • Mao,B., Vyas,R.R., Hingerty,B.E., Broyde,S., Basu,A.K. and Patel,D.J. (1996) Solution conformation of the N-(deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) adduct opposite dC in a DNA duplex. Biochemistry, 35 12659-12670.
    • (1996) Biochemistry , vol.35 , pp. 12659-12670
    • Mao, B.1    Vyas, R.R.2    Hingerty, B.E.3    Broyde, S.4    Basu, A.K.5    Patel, D.J.6
  • 16
    • 0033578343 scopus 로고    scopus 로고
    • Solution structure of the N-(deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) adduct opposite dA in a DNA duplex
    • Gu,Z., Gorin,A., Krishnasamy,R., Hingerty,B.E., Basu,A.K., Broyde,S. and Patel,D.J. (1999) Solution structure of the N-(deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) adduct opposite dA in a DNA duplex. Biochemistry, 38, 10843-10854.
    • (1999) Biochemistry , vol.38 , pp. 10843-10854
    • Gu, Z.1    Gorin, A.2    Krishnasamy, R.3    Hingerty, B.E.4    Basu, A.K.5    Broyde, S.6    Patel, D.J.7
  • 17
    • 0026795019 scopus 로고
    • NMR structural studies of a 15-mer DNA sequence from a ras protooncogene, modified at the first base of codon 61 with the carcinogen 4-aminobiphenyl
    • Cho,B.P., Beland,F.A. and Marques,M.M. (1992) NMR structural studies of a 15-mer DNA sequence from a ras protooncogene, modified at the first base of codon 61 with the carcinogen 4-aminobiphenyl. Biochemistry 31, 9587-9602.
    • (1992) Biochemistry , vol.31 , pp. 9587-9602
    • Cho, B.P.1    Beland, F.A.2    Marques, M.M.3
  • 18
    • 0024428898 scopus 로고
    • NMR and computational characterization of the N-(deoxyguanosin-8-yl)aminofluorene adduct [(AF)G] opposite adenosine in DNA: (AF)G[syn].A[anti] pair formation and its pH dependence
    • Norman,D., Abuaf,P., Hingerty,B.E., Live,D., Grunberger,D., Broyde,S. and Patel,D.J. (1989) NMR and computational characterization of the N-(deoxyguanosin-8-yl)aminofluorene adduct [(AF)G] opposite adenosine in DNA: (AF)G[syn].A[anti] pair formation and its pH dependence. Biochemistry, 28, 7462-7476.
    • (1989) Biochemistry , vol.28 , pp. 7462-7476
    • Norman, D.1    Abuaf, P.2    Hingerty, B.E.3    Live, D.4    Grunberger, D.5    Broyde, S.6    Patel, D.J.7
  • 19
    • 0024843623 scopus 로고
    • Minor-groove binding models for acetylaminofluorene modified DNA
    • Shapiro,R., Hingerty,B.E. and Broyde,S. (1989) Minor-groove binding models for acetylaminofluorene modified DNA. J. Biomol. Struct. Dyn. 7, 493-513.
    • (1989) J. Biomol. Struct. Dyn , vol.7 , pp. 493-513
    • Shapiro, R.1    Hingerty, B.E.2    Broyde, S.3
  • 20
    • 0028901297 scopus 로고
    • Solution conformation of the N-(deoxyguanosin-8-yl)aminofluorene adduct opposite deoxyinosine and deoxyguanosine in DNA by NMR and computational characterization
    • Abuaf,P., Hingerty,B.E., Broyde,S. and Grunberger,D. (1995) Solution conformation of the N-(deoxyguanosin-8-yl)aminofluorene adduct opposite deoxyinosine and deoxyguanosine in DNA by NMR and computational characterization. Chem. Res. Toxicol., 8, 369-378.
    • (1995) Chem. Res. Toxicol , vol.8 , pp. 369-378
    • Abuaf, P.1    Hingerty, B.E.2    Broyde, S.3    Grunberger, D.4
  • 21
    • 63249125128 scopus 로고
    • Atomic resolution structures of DNA and DNA modified by carcinogens
    • Hingerty,B.E. and Broyde,S. (1990) Atomic resolution structures of DNA and DNA modified by carcinogens. Internat. J. Supercomp. Appl., 4, 11-21.
    • (1990) Internat. J. Supercomp. Appl , vol.4 , pp. 11-21
    • Hingerty, B.E.1    Broyde, S.2
  • 22
    • 34047251295 scopus 로고    scopus 로고
    • Conformational differences of the C8-Deoxyguanosine adduct of 2-amino-3-methylimidazo[4,5-f]quinoline (IQ) within the NarI recognition sequence
    • Elmquist,C.E., Wang,F., Stover,J.S., Stone,M.P. and Rizzo,C.J. (2007) Conformational differences of the C8-Deoxyguanosine adduct of 2-amino-3-methylimidazo[4,5-f]quinoline (IQ) within the NarI recognition sequence. Chem. Res. Toxicol., 20, 445-454.
    • (2007) Chem. Res. Toxicol , vol.20 , pp. 445-454
    • Elmquist, C.E.1    Wang, F.2    Stover, J.S.3    Stone, M.P.4    Rizzo, C.J.5
  • 23
    • 33746874095 scopus 로고    scopus 로고
    • Base-displaced intercalated structure of the food mutagen 2-amino-3-methylimidazo[4,5-f]-quinoline in the recognition sequence of the NarI restriction enzyme, a hotspot for -2bp deletions
    • Wang,F., DeMuro,N.E., Elmquist,C.E., Stover,J.S., Rizzo,C.J. and Stone,M.P. (2006) Base-displaced intercalated structure of the food mutagen 2-amino-3-methylimidazo[4,5-f]-quinoline in the recognition sequence of the NarI restriction enzyme, a hotspot for -2bp deletions,. J. Am. Chem. Soc., 128, 10085-10095.
    • (2006) J. Am. Chem. Soc , vol.128 , pp. 10085-10095
    • Wang, F.1    DeMuro, N.E.2    Elmquist, C.E.3    Stover, J.S.4    Rizzo, C.J.5    Stone, M.P.6
  • 24
    • 34547092924 scopus 로고    scopus 로고
    • DNA sequence modulates the conformation of the food mutagen 2-amino-3-methylimidazo[4,5-f]quinoline in the recognition sequence of the NarI restriction enzyme
    • Wang,F., Elmquist,C.E., Stover,J.S., Rizzo,C.J. and Stone,M.P. (2007) DNA sequence modulates the conformation of the food mutagen 2-amino-3-methylimidazo[4,5-f]quinoline in the recognition sequence of the NarI restriction enzyme. Biochemistry, 46, 8498-8516.
    • (2007) Biochemistry , vol.46 , pp. 8498-8516
    • Wang, F.1    Elmquist, C.E.2    Stover, J.S.3    Rizzo, C.J.4    Stone, M.P.5
  • 26
    • 33846818707 scopus 로고    scopus 로고
    • Examination of the long-range effects of aminofluorene-induced conformational heterogeneity and its relevance to the mechanisms of translesion DNA synthesis
    • Meneni,S.R., Liang,F. and Cho,B.P. (2007) Examination of the long-range effects of aminofluorene-induced conformational heterogeneity and its relevance to the mechanisms of translesion DNA synthesis. J. Mol. Biol., 366, 1387-1400.
    • (2007) J. Mol. Biol , vol.366 , pp. 1387-1400
    • Meneni, S.R.1    Liang, F.2    Cho, B.P.3
  • 27
    • 33748668675 scopus 로고    scopus 로고
    • Induced circular dichroism characteristics as conformational probes for carcinogenic aminofluorene-DNA adducts
    • Liang,F., Meneni,S.R. and Cho,B.P. (2006) Induced circular dichroism characteristics as conformational probes for carcinogenic aminofluorene-DNA adducts. Chem. Res. Toxicol., 19, 1040-1043.
    • (2006) Chem. Res. Toxicol , vol.19 , pp. 1040-1043
    • Liang, F.1    Meneni, S.R.2    Cho, B.P.3
  • 28
    • 36248931510 scopus 로고    scopus 로고
    • 19 F NMR, UV and CD spectroscopy. Biochemistry, 46, 13310-13321.
    • 19 F NMR, UV and CD spectroscopy. Biochemistry, 46, 13310-13321.
  • 29
    • 35048853499 scopus 로고    scopus 로고
    • Probing the thermodynamics of aminofluorene-induced trans-lesion DNA synthesis by differential scanning calorimetry
    • Liang,F. and Cho,B.P. (2007) Probing the thermodynamics of aminofluorene-induced trans-lesion DNA synthesis by differential scanning calorimetry. J. Am. Chem. Soc., 129, 12108-12109.
    • (2007) J. Am. Chem. Soc , vol.129 , pp. 12108-12109
    • Liang, F.1    Cho, B.P.2
  • 31
    • 0034131114 scopus 로고    scopus 로고
    • Nucleic acid sequence and repair: Role of adduct, neighbor bases and enzyme specificity
    • Singer,B. and Hang,B. (2000) Nucleic acid sequence and repair: Role of adduct, neighbor bases and enzyme specificity. Carcinogenesis, 21, 1071-1078.
    • (2000) Carcinogenesis , vol.21 , pp. 1071-1078
    • Singer, B.1    Hang, B.2
  • 32
    • 0242318377 scopus 로고    scopus 로고
    • Effets of DNA adduct structure and sequence context on strand opening of repair intermediates and incision by UvrABC nuclease
    • Zou,Y., Shell,S.M., Utzat,C.D., Luo,C., Yang,Z., Geacintov,N.E. and Basu,A.K. (2003) Effets of DNA adduct structure and sequence context on strand opening of repair intermediates and incision by UvrABC nuclease. Biochemistry, 42, 12654-12661.
    • (2003) Biochemistry , vol.42 , pp. 12654-12661
    • Zou, Y.1    Shell, S.M.2    Utzat, C.D.3    Luo, C.4    Yang, Z.5    Geacintov, N.E.6    Basu, A.K.7
  • 33
    • 34250177258 scopus 로고    scopus 로고
    • Sequence context- and temperature-dependent nucleotide excision repair of a benzo[a]pyrene diol epoxideguanine DNA adduct catalyzed by thermophilic UvrABC proteins
    • Ruan,Q., Liu,T., Kolbanovskiy,A., Liu,Y., Ren,J., Skovraga,M., Zou,Y., Lader,J., Malkani,B., Amin,S., Van Houten,B. and Geacintov,N.E. (2007) Sequence context- and temperature-dependent nucleotide excision repair of a benzo[a]pyrene diol epoxideguanine DNA adduct catalyzed by thermophilic UvrABC proteins. Biochemistry, 46, 7006-7015.
    • (2007) Biochemistry , vol.46 , pp. 7006-7015
    • Ruan, Q.1    Liu, T.2    Kolbanovskiy, A.3    Liu, Y.4    Ren, J.5    Skovraga, M.6    Zou, Y.7    Lader, J.8    Malkani, B.9    Amin, S.10    Van Houten, B.11    Geacintov, N.E.12
  • 34
    • 35548986675 scopus 로고    scopus 로고
    • Dynamics of a benzo[a]pyrene-derived guanine DNA lesion in TGT and CGC sequence contexts: Enhanced mobility in TGT explains conformational heterogeneity, flexible bending, and greater susceptibility to nuclectide excision repair
    • Cai,Y., Patel,D.J., Geacintov,N.E. and Broyde,S. (2007) Dynamics of a benzo[a]pyrene-derived guanine DNA lesion in TGT and CGC sequence contexts: Enhanced mobility in TGT explains conformational heterogeneity, flexible bending, and greater susceptibility to nuclectide excision repair. J. Mol. Biol., 374, 292-305.
    • (2007) J. Mol. Biol , vol.374 , pp. 292-305
    • Cai, Y.1    Patel, D.J.2    Geacintov, N.E.3    Broyde, S.4
  • 35
    • 33646839960 scopus 로고    scopus 로고
    • Genetic effects of oxidative DNA damages: Comparative mutagenesis of the imidazole ring-opened formamidapyrimidines (Fapy lesions) and 8-oxo-purines in simian kidney cells
    • Kalam,M.A., Haraguchi,K, Chandani,S., Loechler,E.L., Moriya,M., Greenberg,M.M. and Basu,A.K. (2006) Genetic effects of oxidative DNA damages: Comparative mutagenesis of the imidazole ring-opened formamidapyrimidines (Fapy lesions) and 8-oxo-purines in simian kidney cells. Nucl. Acids Res., 34, 2305-2315.
    • (2006) Nucl. Acids Res , vol.34 , pp. 2305-2315
    • Kalam, M.A.1    Haraguchi, K.2    Chandani, S.3    Loechler, E.L.4    Moriya, M.5    Greenberg, M.M.6    Basu, A.K.7
  • 36
    • 23844463175 scopus 로고    scopus 로고
    • Mutagenesis of 8-oxoguanine adjacent to an abasic site in simian kidney cells: Tandem mutations and enhancement of G → T transversions
    • Kalam,M.A. and.Basu,A.K. (2005) Mutagenesis of 8-oxoguanine adjacent to an abasic site in simian kidney cells: Tandem mutations and enhancement of G → T transversions. Chem. Res. Toxicol., 18,
    • (2005) Chem. Res. Toxicol , vol.18
    • Kalam, M.A.1    Basu, A.K.2
  • 37
    • 0030693128 scopus 로고    scopus 로고
    • Kinetics of DNA polymerase I (Klenow fragment exo-) activity on damaged DNA templates: Effect of proximal and distal template damage on DNA synthesis
    • Miller,H. and Grollman,A.P. (1997) Kinetics of DNA polymerase I (Klenow fragment exo-) activity on damaged DNA templates: Effect of proximal and distal template damage on DNA synthesis. Biochemistry, 36, 15336-15342.
    • (1997) Biochemistry , vol.36 , pp. 15336-15342
    • Miller, H.1    Grollman, A.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.