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Volumn 19, Issue 4, 2009, Pages 277-282

Bacterial communities associated with tuberculate ectomycorrhizae of Rhizopogon spp.

Author keywords

Bacteria; Library comparison; PCR; Rhizopogon; Tuberculate ectomycorrhizae

Indexed keywords

RNA 16S;

EID: 63149094563     PISSN: 09406360     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00572-008-0213-2     Document Type: Article
Times cited : (6)

References (39)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • RI Amann W Ludwig K-H Schleifer 1995 Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiol Rev 59 143 169
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 2
    • 0038492525 scopus 로고    scopus 로고
    • In situ identification of intracellular bacteria related to Paenibacillus spp. in the mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N
    • J Bertaux M Schmid NC Prevost-Boure JL Churin A Hartmann J Garbaye P Frey-Klett 2003 In situ identification of intracellular bacteria related to Paenibacillus spp. in the mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N Appl Environ Microbiol 69 4243 4248
    • (2003) Appl Environ Microbiol , vol.69 , pp. 4243-4248
    • Bertaux, J.1    Schmid, M.2    Prevost-Boure, N.C.3    Churin, J.L.4    Hartmann, A.5    Garbaye, J.6    Frey-Klett, P.7
  • 3
    • 27444446457 scopus 로고    scopus 로고
    • Occurrence and distribution of endobacteria in the plant-associated mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N
    • J Bertaux M Schmid P Hutzler A Hartmann J Garbaye P Frey-Klett 2005 Occurrence and distribution of endobacteria in the plant-associated mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N Environ Microbiol 7 1786 1795
    • (2005) Environ Microbiol , vol.7 , pp. 1786-1795
    • Bertaux, J.1    Schmid, M.2    Hutzler, P.3    Hartmann, A.4    Garbaye, J.5    Frey-Klett, P.6
  • 4
    • 0026675038 scopus 로고
    • Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms
    • TD Bruns TM Szaro 1992 Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms Mol Biol Evol 9 836 855
    • (1992) Mol Biol Evol , vol.9 , pp. 836-855
    • Bruns, T.D.1    Szaro, T.M.2
  • 5
    • 47249133819 scopus 로고    scopus 로고
    • Molecular analysis of bacterial communities associated with the roots of Douglas fir (Pseudotsuga menziesii) colonized by different ectomycorrhizal fungi
    • DJ Burke SM Dunham AM Kretzer 2008 Molecular analysis of bacterial communities associated with the roots of Douglas fir (Pseudotsuga menziesii) colonized by different ectomycorrhizal fungi FEMS Microbiol Ecol 65 299 309
    • (2008) FEMS Microbiol Ecol , vol.65 , pp. 299-309
    • Burke, D.J.1    Dunham, S.M.2    Kretzer, A.M.3
  • 6
    • 0034964968 scopus 로고    scopus 로고
    • The diversity or Archaea and Bacteria in association with the roots of Zea mays L
    • MK Chelius EW Triplett 2001 The diversity or Archaea and Bacteria in association with the roots of Zea mays L Microb Ecol 41 252 263
    • (2001) Microb Ecol , vol.41 , pp. 252-263
    • Chelius, M.K.1    Triplett, E.W.2
  • 7
    • 23744460935 scopus 로고    scopus 로고
    • Living in a fungal world: Impact of fungi on soil bacterial niche development
    • W de Boer LB Folman RC Summerbell L Boddy 2005 Living in a fungal world: impact of fungi on soil bacterial niche development FEMS Microbiol Rev 29 795 811
    • (2005) FEMS Microbiol Rev , vol.29 , pp. 795-811
    • De Boer, W.1    Folman, L.B.2    Summerbell, R.C.3    Boddy, L.4
  • 8
    • 84987028570 scopus 로고
    • Ectomycorrhiza formation in Eucalyptus. V. a tuberculate ectomycorrhiza of Eucalyptus pilularis
    • B Dell N Malajczuk GT Thomson 1990 Ectomycorrhiza formation in Eucalyptus. V. A tuberculate ectomycorrhiza of Eucalyptus pilularis New Phytol 114 633 640
    • (1990) New Phytol , vol.114 , pp. 633-640
    • Dell, B.1    Malajczuk, N.2    Thomson, G.T.3
  • 9
    • 47249154852 scopus 로고    scopus 로고
    • Evaluation of PCR primers for universal nifH gene targeting and for assessment of transcribed nifH pools in roots of Oryza longistaminata with and without low nitrogen input
    • MD Diallo B Reinhold-Hurek T Hurek 2008 Evaluation of PCR primers for universal nifH gene targeting and for assessment of transcribed nifH pools in roots of Oryza longistaminata with and without low nitrogen input FEMS Microbiol Ecol 65 220 228
    • (2008) FEMS Microbiol Ecol , vol.65 , pp. 220-228
    • Diallo, M.D.1    Reinhold-Hurek, B.2    Hurek, T.3
  • 10
    • 34548405265 scopus 로고    scopus 로고
    • The mycorrhiza helper bacteria revisited
    • P Frey-Klett J Garbaye M Tarkka 2007 The mycorrhiza helper bacteria revisited New Phytol 176 22 36
    • (2007) New Phytol , vol.176 , pp. 22-36
    • Frey-Klett, P.1    Garbaye, J.2    Tarkka, M.3
  • 11
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity of basidiomycetes: Application to the identification of mycorrhizae and rusts
    • M Gardes TD Bruns 1993 ITS primers with enhanced specificity of basidiomycetes: application to the identification of mycorrhizae and rusts Mol Ecol 2 113 118
    • (1993) Mol Ecol , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 12
    • 18144395810 scopus 로고    scopus 로고
    • Contamination of diverse nifH and nifH-like DNA into commercial PCR primers
    • M Goto S Ando Y Hachisuka T Yoneyama 2005 Contamination of diverse nifH and nifH-like DNA into commercial PCR primers FEMS Microbiol Lett 246 33 38
    • (2005) FEMS Microbiol Lett , vol.246 , pp. 33-38
    • Goto, M.1    Ando, S.2    Hachisuka, Y.3    Yoneyama, T.4
  • 13
    • 23744483488 scopus 로고    scopus 로고
    • Suicide polymerase endonuclease restriction, a novel technique for enhancing PCR amplification of minor DNA templates
    • SJ Green D Minz 2005 Suicide polymerase endonuclease restriction, a novel technique for enhancing PCR amplification of minor DNA templates Appl Environ Microbiol 71 4721 4727
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4721-4727
    • Green, S.J.1    Minz, D.2
  • 14
    • 0036325890 scopus 로고    scopus 로고
    • Biology of the ectomycorrhizal genus Rhizopogon. VI. Re-examination of infrageneric relationships inferred from phylogenetic analyses of internal transcribed spacer sequences
    • LC Grubisha JM Trappe R Molina JW Spatafora 2002 Biology of the ectomycorrhizal genus Rhizopogon. VI. Re-examination of infrageneric relationships inferred from phylogenetic analyses of internal transcribed spacer sequences Mycologia 94 607 619
    • (2002) Mycologia , vol.94 , pp. 607-619
    • Grubisha, L.C.1    Trappe, J.M.2    Molina, R.3    Spatafora, J.W.4
  • 15
    • 84987041573 scopus 로고
    • Tuberculate mycorrhizas of Castanopsis borneenis King and Engelhardtia roxburghiana Wall
    • I Haug R Weber F Oberwinkler J Tschen 1991 Tuberculate mycorrhizas of Castanopsis borneenis King and Engelhardtia roxburghiana Wall New Phytol 117 25 35
    • (1991) New Phytol , vol.117 , pp. 25-35
    • Haug, I.1    Weber, R.2    Oberwinkler, F.3    Tschen, J.4
  • 16
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • P Hugenholtz BM Goebel NR Pace 1998 Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity J Bacteriol 180 4765 4774
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 18
    • 33750924251 scopus 로고    scopus 로고
    • Diversity and expression of nitrogenase genes (nifH) from ectomycorrhizas of Corsican pine (Pinus nigra)
    • H Izumi IC Anderson IJ Alexander K Killham ERB Moore 2006 Diversity and expression of nitrogenase genes (nifH) from ectomycorrhizas of Corsican pine (Pinus nigra) Environ Microbiol 8 2224 2230
    • (2006) Environ Microbiol , vol.8 , pp. 2224-2230
    • Izumi, H.1    Anderson, I.C.2    Alexander, I.J.3    Killham, K.4    Moore, E.R.B.5
  • 19
    • 33846603707 scopus 로고    scopus 로고
    • Characterization of endobacterial communities in ectomycorrhizas by DNA- and RNA-based molecular methods
    • H Izumi ERB Moore K Killham IJ Alexander IC Anderson 2007 Characterization of endobacterial communities in ectomycorrhizas by DNA- and RNA-based molecular methods Soil Biol Biochem 39 891 899
    • (2007) Soil Biol Biochem , vol.39 , pp. 891-899
    • Izumi, H.1    Moore, E.R.B.2    Killham, K.3    Alexander, I.J.4    Anderson, I.C.5
  • 20
    • 42449149416 scopus 로고    scopus 로고
    • Bacteria associated with ectomycorrhizas of slash pine (Pinus elliottii) in south-eastern Queensland, Australia
    • H Izumi JWG Cairney K Killham E Moore IJ Alexander IC Anderson 2008 Bacteria associated with ectomycorrhizas of slash pine (Pinus elliottii) in south-eastern Queensland, Australia FEMS Microbiol Lett 282 196 204
    • (2008) FEMS Microbiol Lett , vol.282 , pp. 196-204
    • Izumi, H.1    Cairney, J.W.G.2    Killham, K.3    Moore, E.4    Alexander, I.J.5    Anderson, I.C.6
  • 21
    • 0030444698 scopus 로고    scopus 로고
    • Internal transcribed spacer sequences from 38 recognized species of Suillus sensu lato: Phylogenetic and taxonomic implications
    • A Kretzer Y Li TM Szaro TD Bruns 1996 Internal transcribed spacer sequences from 38 recognized species of Suillus sensu lato: phylogenetic and taxonomic implications Mycologia 88 776 785
    • (1996) Mycologia , vol.88 , pp. 776-785
    • Kretzer, A.1    Li, Y.2    Szaro, T.M.3    Bruns, T.D.4
  • 22
    • 0042768041 scopus 로고    scopus 로고
    • Taxonomy of the Rhizopogon vinicolor species complex based on analysis of ITS sequences and microsatellite loci
    • AM Kretzer DL Luoma R Molina JW Spatafora 2003 Taxonomy of the Rhizopogon vinicolor species complex based on analysis of ITS sequences and microsatellite loci Mycologia 95 479 486
    • (2003) Mycologia , vol.95 , pp. 479-486
    • Kretzer, A.M.1    Luoma, D.L.2    Molina, R.3    Spatafora, J.W.4
  • 23
    • 21244487099 scopus 로고    scopus 로고
    • Patterns of vegetative growth and gene flow in Rhizopogon vinicolor and R. vesiculosus (Boletales, Basidiomycota)
    • AM Kretzer S Dunham R Molina JW Spatafora 2005 Patterns of vegetative growth and gene flow in Rhizopogon vinicolor and R. vesiculosus (Boletales, Basidiomycota) Mol Ecol 14 2259 2268
    • (2005) Mol Ecol , vol.14 , pp. 2259-2268
    • Kretzer, A.M.1    Dunham, S.2    Molina, R.3    Spatafora, J.W.4
  • 24
    • 0001719805 scopus 로고
    • Nitrogen-fixing (acetylene-reducing) bacteria associated with ectomycorrhizae of Douglas-fir
    • CY Li LL Hung 1987 Nitrogen-fixing (acetylene-reducing) bacteria associated with ectomycorrhizae of Douglas-fir Plant Soil 98 425 428
    • (1987) Plant Soil , vol.98 , pp. 425-428
    • Li, C.Y.1    Hung, L.L.2
  • 25
    • 0027087963 scopus 로고
    • Nitrogen-fixing Bacillus sp. associated with Douglas-fir tuberculate ectomycorrhizae
    • CY Li HB Massicotte LVH Moore 1992 Nitrogen-fixing Bacillus sp. associated with Douglas-fir tuberculate ectomycorrhizae Plant Soil 140 35 40
    • (1992) Plant Soil , vol.140 , pp. 35-40
    • Li, C.Y.1    Massicotte, H.B.2    Moore, L.V.H.3
  • 26
    • 0000701906 scopus 로고
    • Structural aspects of Douglas-fir [Pseudotsuga menziesii (Mirb.) Franco] tuberculate ectomycorrhizae
    • HB Massicotte LH Melville CY Li RL Peterson 1992 Structural aspects of Douglas-fir [Pseudotsuga menziesii (Mirb.) Franco] tuberculate ectomycorrhizae Trees (Berl) 6 137 146
    • (1992) Trees (Berl) , vol.6 , pp. 137-146
    • Massicotte, H.B.1    Melville, L.H.2    Li, C.Y.3    Peterson, R.L.4
  • 27
    • 0034004745 scopus 로고    scopus 로고
    • Bacterial community structure and colonization patterns of Fagus sylvatica L. ectomycorrhizospheres as determined by fluorescent in situ hybridization and confocal laser scanning microscopy
    • B Mogge C Loferer R Agerer P Hutzler A Hartmann 2000 Bacterial community structure and colonization patterns of Fagus sylvatica L. ectomycorrhizospheres as determined by fluorescent in situ hybridization and confocal laser scanning microscopy Mycorrhiza 9 271 278
    • (2000) Mycorrhiza , vol.9 , pp. 271-278
    • Mogge, B.1    Loferer, C.2    Agerer, R.3    Hutzler, P.4    Hartmann, A.5
  • 28
    • 33646849103 scopus 로고    scopus 로고
    • Suillus tomentosus tuberculate ectomycorrhizal abundance and distribution in Pinus contorta woody debris
    • LR Paul BK Chapman CP Chanway 2006 Suillus tomentosus tuberculate ectomycorrhizal abundance and distribution in Pinus contorta woody debris Can J For Res 36 460 466
    • (2006) Can J for Res , vol.36 , pp. 460-466
    • Paul, L.R.1    Chapman, B.K.2    Chanway, C.P.3
  • 29
    • 0347058433 scopus 로고
    • Morphology and possible mycobiont (Suillus pictus) of a tuberculate ectomycorrhiza on Pinus strobus
    • BL Randall LF Grand 1986 Morphology and possible mycobiont (Suillus pictus) of a tuberculate ectomycorrhiza on Pinus strobus Can J Bot 64 2182 2192
    • (1986) Can J Bot , vol.64 , pp. 2182-2192
    • Randall, B.L.1    Grand, L.F.2
  • 30
    • 33744928294 scopus 로고    scopus 로고
    • Phylogeny of arbuscular mycorrhizal fungi predicts community composition of symbiosis-associated bacteria
    • MC Rillig DL Mummey PW Ramsey JN Klironomos JE Gannon 2006 Phylogeny of arbuscular mycorrhizal fungi predicts community composition of symbiosis-associated bacteria FEMS Microbiol Ecol 57 389 395
    • (2006) FEMS Microbiol Ecol , vol.57 , pp. 389-395
    • Rillig, M.C.1    Mummey, D.L.2    Ramsey, P.W.3    Klironomos, J.N.4    Gannon, J.E.5
  • 31
    • 4344619286 scopus 로고    scopus 로고
    • Application of a new PCR primer for terminal restriction fragment length polymorphism analysis of the bacterial communities in plant roots
    • M Sakai A Matsuka T Komura S Kanazawa 2004 Application of a new PCR primer for terminal restriction fragment length polymorphism analysis of the bacterial communities in plant roots J Microbiol Methods 59 81 89
    • (2004) J Microbiol Methods , vol.59 , pp. 81-89
    • Sakai, M.1    Matsuka, A.2    Komura, T.3    Kanazawa, S.4
  • 32
    • 33646116078 scopus 로고    scopus 로고
    • Introducing TreeClimber, a test to compare microbial community structures
    • PD Schloss J Handelsman 2006 Introducing TreeClimber, a test to compare microbial community structures Appl Environ Microbiol 72 2379 2384
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2379-2384
    • Schloss, P.D.1    Handelsman, J.2
  • 33
    • 63149157340 scopus 로고    scopus 로고
    • Fungi in the Boletaceae form tuberculate ectomycorrhizae with Quercus
    • ME Smith DH Pfister 2008 Fungi in the Boletaceae form tuberculate ectomycorrhizae with Quercus Inoculum 59 56
    • (2008) Inoculum , vol.59 , pp. 56
    • Smith, M.E.1    Pfister, D.H.2
  • 34
    • 34548293679 scopus 로고    scopus 로고
    • Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Q Wang GM Garrity JM Tiedje JR Cole 2007 Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy Appl Environ Microbiol 73 5261 5267
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 35
    • 0029668450 scopus 로고    scopus 로고
    • Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes
    • S Weidner W Arnold A Pühler 1996 Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes Appl Environ Microbiol 62 766 771
    • (1996) Appl Environ Microbiol , vol.62 , pp. 766-771
    • Weidner, S.1    Arnold, W.2    Pühler, A.3
  • 36
    • 0033083698 scopus 로고    scopus 로고
    • Analysis of nifH gene pool complexity in soil and litter at a Douglas-fir forest site in the Oregon cascade mountain range
    • F Widmer BT Shaffer LA Porteous RJ Seidler 1999 Analysis of nifH gene pool complexity in soil and litter at a Douglas-fir forest site in the Oregon cascade mountain range Appl Environ Microbiol 65 374 380
    • (1999) Appl Environ Microbiol , vol.65 , pp. 374-380
    • Widmer, F.1    Shaffer, B.T.2    Porteous, L.A.3    Seidler, R.J.4
  • 37
    • 0000932269 scopus 로고
    • Characterization and classification of mycorrhizas of Douglas-fir. II Pseudotsuga menziesii+Rhizopogon vinicolor
    • B Zak 1971 Characterization and classification of mycorrhizas of Douglas-fir. II Pseudotsuga menziesii+Rhizopogon vinicolor Can J Bot 49 1079 1048
    • (1971) Can J Bot , vol.49 , pp. 1079-1048
    • Zak, B.1
  • 38
    • 0033916012 scopus 로고    scopus 로고
    • Expression of nifH genes in natural microbial assemblages in Lake George, New York, detected by reverse transcriptase PCR
    • S Zani MT Mellon JL Collier JP Zehr 2000 Expression of nifH genes in natural microbial assemblages in Lake George, New York, detected by reverse transcriptase PCR Appl Environ Microbiol 66 3119 3124
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3119-3124
    • Zani, S.1    Mellon, M.T.2    Collier, J.L.3    Zehr, J.P.4
  • 39
    • 0242526211 scopus 로고    scopus 로고
    • Nitrogenase genes in PCR and RT-PCR reagents: Implications for studies of diversity of functional genes
    • JP Zehr TL Crumbliss MJ Church EO Omoregie BD Jenkins 2003 Nitrogenase genes in PCR and RT-PCR reagents: implications for studies of diversity of functional genes Biotechniques 35 996 1005
    • (2003) Biotechniques , vol.35 , pp. 996-1005
    • Zehr, J.P.1    Crumbliss, T.L.2    Church, M.J.3    Omoregie, E.O.4    Jenkins, B.D.5


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